// genesis
// Setting the axonal propagation velocity
float CABLE_VEL = 1 // scale factor = 1/(cable velocity) sec/meter
float destlim = {ST4RS_P23RSb_destlim}
/*
* Usage :
* volumeconnect source-path destination-path
* [-relative]
* [-sourcemask {box,ellipse} x1 y1 x2 y2]
* [-sourcehole {box,ellipse} x1 y1 x2 y2]
* [-destmask {box,ellipse} x1 y1 x2 y2]
* [-desthole {box,ellipse} x1 y1 x2 y2]
* [-probability p]
*/
echo Making connections from the ST4RS cells to the P23RSb cells.
//ST4RS - P23RSb AMPA
str s
//Load synapse location array
str locations = "basalLsupera basalLsuperb basalLsuperc basalLmidsupera basalLmidsuperb basalLmidsuperc basalLmiddeepa basalLmiddeepb basalLmiddeepc basalLdeepa basalLdeepb basalLdeepc basalRsupera basalRsuperb basalRsuperc basalRmidsupera basalRmidsuperb basalRmidsuperc basalRmiddeepa basalRmiddeepb basalRmiddeepc basalRdeepa basalRdeepb basalRdeepc"
foreach s ({arglist {locations}})
rvolumeconnect /ST4RSnet/ST4RS[]/soma/spk17 \
/P23RSbnet/P23RSb[]/{s}/Ex_ch2ST4RSAMPA@all \
-relative \
-sourcemask box -1 -1 -1 1 1 1 \
-destmask box -{destlim} -{destlim} -1 {destlim} {destlim} 1 \
-probability 0.04167*{ST4RS_P23RSb_prob}
end
//ST4RS - P23RSb NMDA
str s
//Load synapse location array
str locations = "basalLsupera basalLsuperb basalLsuperc basalLmidsupera basalLmidsuperb basalLmidsuperc basalLmiddeepa basalLmiddeepb basalLmiddeepc basalLdeepa basalLdeepb basalLdeepc basalRsupera basalRsuperb basalRsuperc basalRmidsupera basalRmidsuperb basalRmidsuperc basalRmiddeepa basalRmiddeepb basalRmiddeepc basalRdeepa basalRdeepb basalRdeepc"
foreach s ({arglist {locations}})
rvolumeconnect /ST4RSnet/ST4RS[]/soma/spk17 \
/P23RSbnet/P23RSb[]/{s}/Ex_ch2ST4RSNMDA@all \
-relative \
-sourcemask box -1 -1 -1 1 1 1 \
-destmask box -{destlim} -{destlim} -1 {destlim} {destlim} 1 \
-probability 0.04167*{ST4RS_P23RSb_prob}
end
echo Setting weights and delays for ST4RS->P23RSb connections.
// assigning delays using the volumedelay function
/*
* Usage :
* volumedelay path
* [-fixed delay]
* [-radial propagation_velocity]
* [-uniform range] (not used here)
* [-gaussian sd max] (not used here)
* [-exp mid max] (not used here)
* [-absoluterandom] (not used here)
*/
rvolumedelay /ST4RSnet/ST4RS[]/soma/spk17 -radial {ST4RS_P23RSb_axdelayCV} -add -gaussian {ST4RS_P23RSb_axdelaystdev} {ST4RS_P23RSb_axdelaymaxdev}
//ST4RS - P23RSb AMPA
str s
//Load synapse location array
str locations = "basalLsupera basalLsuperb basalLsuperc basalLmidsupera basalLmidsuperb basalLmidsuperc basalLmiddeepa basalLmiddeepb basalLmiddeepc basalLdeepa basalLdeepb basalLdeepc basalRsupera basalRsuperb basalRsuperc basalRmidsupera basalRmidsuperb basalRmidsuperc basalRmiddeepa basalRmiddeepb basalRmiddeepc basalRdeepa basalRdeepb basalRdeepc"
foreach s ({arglist {locations}})
syndelay /P23RSbnet/P23RSb[]/basalLsupera/Ex_ch2ST4RSAMPA {ST4RS_P23RSb_syndelay} -add -gaussian {ST4RS_P23RSb_syndelaystdev} {ST4RS_P23RSb_syndelaymaxdev}
end
//ST4RS - P23RSb NMDA
str s
//Load synapse location array
str locations = "basalLsupera basalLsuperb basalLsuperc basalLmidsupera basalLmidsuperb basalLmidsuperc basalLmiddeepa basalLmiddeepb basalLmiddeepc basalLdeepa basalLdeepb basalLdeepc basalRsupera basalRsuperb basalRsuperc basalRmidsupera basalRmidsuperb basalRmidsuperc basalRmiddeepa basalRmiddeepb basalRmiddeepc basalRdeepa basalRdeepb basalRdeepc"
foreach s ({arglist {locations}})
syndelay /P23RSbnet/P23RSb[]/basalLsupera/Ex_ch2ST4RSNMDA {ST4RS_P23RSb_syndelay} -add -gaussian {ST4RS_P23RSb_syndelaystdev} {ST4RS_P23RSb_syndelaymaxdev}
end
// assigning weights using the volumeweight function
/*
* Usage :
* volumeweight sourcepath
* [-fixed weight]
* [-decay decay_rate max_weight min_weight]
* [-uniform range]
* [-gaussian sd max]
* [-exponential mid max]
* [-absoluterandom]
*/
rvolumeweight /ST4RSnet/ST4RS[]/soma/spk17 -decay {ST4RSdecayrate} {ST4RSmaxwgt} {ST4RSminwgt}
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