// genesis
// Setting the axonal propagation velocity
float CABLE_VEL = 1 // scale factor = 1/(cable velocity) sec/meter
float destlim = {ST4RS_P5IBa_destlim}
/*
* Usage :
* volumeconnect source-path destination-path
* [-relative]
* [-sourcemask {box,ellipse} x1 y1 x2 y2]
* [-sourcehole {box,ellipse} x1 y1 x2 y2]
* [-destmask {box,ellipse} x1 y1 x2 y2]
* [-desthole {box,ellipse} x1 y1 x2 y2]
* [-probability p]
*/
echo Making connections from the ST4RS cells to the P5IBa cells.
//ST4RS - P5IBa AMPA
str s
//Load synapse location array
str locations = "apdend2 apdend3 apdend4 apdend5 apdend6 apdend7 apobdistLa apobmidLa apobproxLa apobdistRa apobmidRa apobproxRa"
foreach s ({arglist {locations}})
rvolumeconnect /ST4RSnet/ST4RS[]/soma/spk17 \
/P5IBanet/P5IBa[]/{s}/Ex_ch6ST4RSAMPA@all \
-relative \
-sourcemask box -1 -1 -1 1 1 1 \
-destmask box -{destlim} -{destlim} -1 {destlim} {destlim} 1 \
-probability 0.08333*{ST4RS_P5IBa_prob}
end
//ST4RS - P5IBa NMDA
str s
//Load synapse location array
str locations = "apdend2 apdend3 apdend4 apdend5 apdend6 apdend7 apobdistLa apobmidLa apobproxLa apobdistRa apobmidRa apobproxRa"
foreach s ({arglist {locations}})
rvolumeconnect /ST4RSnet/ST4RS[]/soma/spk17 \
/P5IBanet/P5IBa[]/{s}/Ex_ch6ST4RSNMDA@all \
-relative \
-sourcemask box -1 -1 -1 1 1 1 \
-destmask box -{destlim} -{destlim} -1 {destlim} {destlim} 1 \
-probability 0.08333*{ST4RS_P5IBa_prob}
end
echo Setting weights and delays for ST4RS->P5IBa connections.
// assigning delays using the volumedelay function
/*
* Usage :
* volumedelay path
* [-fixed delay]
* [-radial propagation_velocity]
* [-uniform range] (not used here)
* [-gaussian sd max] (not used here)
* [-exp mid max] (not used here)
* [-absoluterandom] (not used here)
*/
rvolumedelay /ST4RSnet/ST4RS[]/soma/spk17 -radial {ST4RS_P5IBa_axdelayCV} -add -gaussian {ST4RS_P5IBa_axdelaystdev} {ST4RS_P5IBa_axdelaymaxdev}
//ST4RS - P5IBa AMPA
str s
//Load synapse location array
str locations = "apdend2 apdend3 apdend4 apdend5 apdend6 apdend7 apobdistLa apobmidLa apobproxLa apobdistRa apobmidRa apobproxRa"
foreach s ({arglist {locations}})
syndelay /P5IBanet/P5IBa[]/{s}/Ex_ch6ST4RSAMPA {ST4RS_P5IBa_syndelay} -add -gaussian {ST4RS_P5IBa_syndelaystdev} {ST4RS_P5IBa_syndelaymaxdev}
end
//ST4RS - P5IBa NMDA
str s
//Load synapse location array
str locations = "apdend2 apdend3 apdend4 apdend5 apdend6 apdend7 apobdistLa apobmidLa apobproxLa apobdistRa apobmidRa apobproxRa"
foreach s ({arglist {locations}})
syndelay /P5IBanet/P5IBa[]/{s}/Ex_ch6ST4RSNMDA {ST4RS_P5IBa_syndelay} -add -gaussian {ST4RS_P5IBa_syndelaystdev} {ST4RS_P5IBa_syndelaymaxdev}
end
// assigning weights using the volumeweight function
/*
* Usage :
* volumeweight sourcepath
* [-fixed weight]
* [-decay decay_rate max_weight min_weight]
* [-uniform range]
* [-gaussian sd max]
* [-exponential mid max]
* [-absoluterandom]
*/
rvolumeweight /ST4RSnet/ST4RS[]/soma/spk17 -decay {ST4RSdecayrate} {ST4RSmaxwgt} {ST4RSminwgt}
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