ModelDB: 5-neuron-model of neocortex for producing realistic extracellular AP shapes (Van Dijck et al. 2012)

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5-neuron-model of neocortex for producing realistic extracellular AP shapes (Van Dijck et al. 2012)

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Accession:226812

This is a 5-neuron model of neocortex, containing one tufted layer-5 pyramidal cell, two non-tufted pyramidal cells, and two inhibitory interneurons. It was used to reproduce extracellular spike shapes in a study comparing algorithms for spike sorting and electrode selection. The neuron models are adapted from Dyhrfjeld-Johnsen et al. (2005).
Reference:
1 . Van Dijck G, Seidl K, Paul O, Ruther P, Van Hulle MM, Maex R (2012) Enhancing the yield of high-density electrode arrays through automated electrode selection. Int J Neural Syst 22:1-19 [PubMed]

Model Information (Click on a link to find other models with that property)

Model Type:	Extracellular; Neuron or other electrically excitable cell; Realistic Network;
Brain Region(s)/Organism:
Cell Type(s):	Neocortex U1 L5B pyramidal pyramidal tract GLU cell; Neocortex U1 L2/6 pyramidal intratelencephalic GLU cell;
Channel(s):
Gap Junctions:
Receptor(s):
Gene(s):
Transmitter(s):
Simulation Environment:	GENESIS;
Model Concept(s):
Implementer(s):	Maex, Reinoud [reinoud at bbf.uia.ac.be];

Search NeuronDB for information about: Neocortex U1 L5B pyramidal pyramidal tract GLU cell; Neocortex U1 L2/6 pyramidal intratelencephalic GLU cell;

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Five-neuron-neocortex

DS1_141099_rot2_sc_defmesh_axon.p

electrodes_fixbug.g *

electrodes_try.g *

Excitatory_fibres.g *

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Firing_rate_modulation.g *

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Gran_synchan.g *

Harsch-Robinson_modulation.g *

Hgradient.g *

Inhibitory_fibres.g *

L5P_ascout.g *

L5P_chans.g *

L5P_chans_tab.g

L5P_chans_tab_Temp.g *

L5P_const+axon+syn.g *

showfield /L5P/p0b1b2b1b1b1b2b1b2b1b2b1b2b1b1b1b2b1b2b1b2b1b2b1b2b1b2b1b2b1b2b1b1b2b2[10]  -a

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