Robust transmission in the inhibitory Purkinje Cell to Cerebellar Nuclei pathway (Abbasi et al 2017)

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1 . Abbasi S, Hudson AE, Maran SK, Cao Y, Abbasi A, Heck DH, Jaeger D (2017) Robust Transmission of Rate Coding in the Inhibitory Purkinje Cell to Cerebellar Nuclei Pathway in Awake Mice PLOS Computational Biology
2 . Steuber V, Schultheiss NW, Silver RA, De Schutter E, Jaeger D (2011) Determinants of synaptic integration and heterogeneity in rebound firing explored with data-driven models of deep cerebellar nucleus cells. J Comput Neurosci 30:633-58 [PubMed]
3 . Steuber V, Jaeger D (2013) Modeling the generation of output by the cerebellar nuclei. Neural Netw 47:112-9 [PubMed]
4 . Steuber V, De Schutter E, Jaeger D (2004) Passive models of neurons in the deep cerebellar nuclei: the effect of reconstruction errors Neurocomputing 58-60:563-568
5 . Luthman J, Hoebeek FE, Maex R, Davey N, Adams R, De Zeeuw CI, Steuber V (2011) STD-dependent and independent encoding of input irregularity as spike rate in a computational model of a cerebellar nucleus neuron. Cerebellum 10:667-82 [PubMed]
Model Information (Click on a link to find other models with that property)
Model Type: Neuron or other electrically excitable cell;
Brain Region(s)/Organism: Cerebellum;
Cell Type(s): Cerebellum deep nucleus neuron;
Channel(s): I h; I T low threshold; I L high threshold; I Na,p; I Na,t; I K,Ca; I K;
Gap Junctions:
Receptor(s): AMPA; NMDA; GabaA;
Transmitter(s): Gaba; Glutamate;
Simulation Environment: GENESIS;
Model Concept(s): Synaptic Integration;
Implementer(s): Jaeger, Dieter [djaeger at];
Search NeuronDB for information about:  GabaA; AMPA; NMDA; I Na,p; I Na,t; I L high threshold; I T low threshold; I K; I h; I K,Ca; Gaba; Glutamate;
% PANDORA Toolbox Classes
% The following classes are designed as generic templates that can be 
% subclassed to take specific tasks. They should not be modified for
% more specialized tasks.
% Basic data wrapper classes that define the measurements:
%   trace		- A voltage/current trace.
%   spikes		- Spike times of a trace. 
%   spike_shape		- Averaged spike shape from a trace.
%   period		- Defines time periods to operate on trace or spikes objects.
% Classes specialized for CIP experiments tests:
%   cip_trace		- A voltage trace with a CIP applied.
% Profile classes that hold test results:
%   result_profile	- Base class that holds a results structure.
%   trace_profile	- Generic example class for holding a trace profile.
%   cip_trace_profile	- Holds cip_trace results. Template class designed 
%			only for subclassing.
%   cip_trace_allspikes_profile 
%			- Created by cip_trace/getProfileAllSpikes, contains statistics
%			  of spike shape measures from individual spikes.
%   params_tests_profile- Collects both intermediate and result data structures 
%			from analysis of a params_tests_db.
% Dataset classes that point to or hold raw data:
%   params_tests_dataset - Base class for datasets.
%   params_tests_fileset - Holds a list of filenames and associated information,  
%			   capable of creating a params_tests_db.
%   params_cip_trace_fileset - Fileset from which cip_trace objects can be created. 
%   physiol_cip_traceset - Dataset of a traceset from a single file.
%   physiol_cip_traceset_fileset - Dataset of a tracesets from many files.
% Database classes created from datasets:
%   tests_db		- Base class for databases. Contains many utilities.
%   params_tests_db	- DB extended to hold parameter values 
%			associated with results.
%   spikes_db		- Holds measures from each individual spike in a trace.
%   test_3D_db		- 3D database of tests that vary with a third variable.
%   corrcoefs_db	- Holds correlation coefficients.
%   histogram_db	- Holds histogram bins.
%   stats_db		- Holds statistical measurements.
%   ranked_db		- Database ranked for a criterion, holds error values or distances.
% Bundle classes that bridge the gap between database and it's ancestral dataset:
%   dataset_db_bundle	- Base class of bundles. Puts a processed and raw DBs with datasets.
%   model_ct_bundle	- Bundle for model databases.
%   physiol_bundle	- Bundle for physiology databases.
% Plotting classes:
%   plot_abstract	- Base class that holds information sufficient to generate any plot.
%   plot_simple		- Simple extension that works for most simple plots.
%   plot_stack		- Holds horizontal or vertical stack of plot_abstract objects.
%   plot_inset		- Places multiple plots at absolute locations in a figure. Good for insets, etc.
%   plot_superpose	- Allows superposing different plot_abstract's in the same axis.
%   plot_bars		- Multi-axis bar plot with extended errorbars.
%   plot_errorbar	- Errorbar plot.
%   plot_errorbars	- Multi-axis errorbar plot.
% Classes for generating formatted printable or presentable documents:
%   doc_generate	- Base class for all document classes.
%   doc_plot		- Holds a plot_abstract and captions, etc.
%   doc_multi		- Combines multiple doc_generate objects.
% Script control classes for cluster computing:
%   script_factory	- Generates a set of scripts based on a recipe.
%   script_array	- Designed to execute an array job serially on a computer.
%   script_array_for_cluster - Executes an array job on a cluster computer.
% Notes:
% See also: subclasses under classes/cengiz
% $Id$
% Author: Cengiz Gunay <>, 2004/09/14

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