Striatal Spiny Projection Neuron, inhibition enhances spatial specificity (Dorman et al 2018)

 Download zip file 
Help downloading and running models
Accession:245411
We use a computational model of a striatal spiny projection neuron to investigate dendritic spine calcium dynamics in response to spatiotemporal patterns of synaptic inputs. We show that spine calcium elevation is stimulus-specific, with supralinear calcium elevation in cooperatively stimulated spines. Intermediate calcium elevation occurs in neighboring non-stimulated dendritic spines, predicting heterosynaptic effects. Inhibitory synaptic inputs enhance the difference between peak calcium in stimulated spines, and peak calcium in non-stimulated spines, thereby enhancing stimulus specificity.
Reference:
1 . Dorman DB, Jedrzejewska-Szmek J, Blackwell KT (2018) Inhibition enhances spatially-specific calcium encoding of synaptic input patterns in a biologically constrained model. Elife, Kennedy, Mary B, ed. [PubMed]
Model Information (Click on a link to find other models with that property)
Model Type: Neuron or other electrically excitable cell;
Brain Region(s)/Organism: Basal ganglia;
Cell Type(s): Neostriatum spiny neuron;
Channel(s): Ca pump; Kir; I A; I A, slow; I CAN; I K,Ca; I Krp; I Na,t; I L high threshold; I R; I T low threshold; IK Bkca; IK Skca; Na/Ca exchanger;
Gap Junctions:
Receptor(s): AMPA; NMDA; GabaA;
Gene(s): Cav3.2 CACNA1H; Cav3.3 CACNA1I; Cav1.2 CACNA1C; Cav1.3 CACNA1D; Cav2.2 CACNA1B; Kv4.2 KCND2; Kir2.1 KCNJ2; Kv2.1 KCNB1;
Transmitter(s): Gaba; Glutamate;
Simulation Environment: GENESIS;
Model Concept(s): Calcium dynamics; Detailed Neuronal Models; Synaptic Integration; Synaptic Plasticity;
Implementer(s): Dorman, Daniel B ;
Search NeuronDB for information about:  GabaA; AMPA; NMDA; I Na,t; I L high threshold; I T low threshold; I A; I K,Ca; I CAN; I A, slow; Na/Ca exchanger; I Krp; I R; Ca pump; Kir; IK Bkca; IK Skca; Gaba; Glutamate;
//genesis
//nmda_channel.g
include MScell/channels/NMDA_CDIGate.g

function make_NMDA_channel (chanpath, Ek, KMg, tau2, gmax, ghk, depr, deprtau,nmdacdi)

  str chanpath //what you want the channel to be called (full path)
  float KMg, tau2, gmax  //parameters that differ between NR2A, B, C and D subunits
  float depr
  float deprtau
  float Ek
  int ghk 
  int nmdacdi

  float tau1 =  (4.4624e-3)/2 //(5.63e-3)/8 //(4.4624e-3)/2 //  DE Chapman et al 2003, table 1 (5.63ms: wolf) w/qfact of 2 
			     //is (4.4624e-3)/2 in Evans et al., 2012
  float CMg = 1.4  // [Mg] in mM //Kerr and Plenz uses 1.4mM Mg

  float eta = 1/3.57  // Kmg = 1/eta, (per mM) overwritten by synparams, 3.57 old, 18 new
  float gamma = 99  //99 new //62 old  // per Volt

	echo "XXX make_NMDA_channel, chanpath = "{chanpath} "caBuffer = "{Ek} "KMg = "{KMg} "tau2 = "{tau2}

    make_synaptic_channel {chanpath} {tau1} {tau2} {gmax} {Ek} {depr} {deprtau}

//the kinetics of the magnesium block is different for different subunits.  
// NR2A and B are about the same, but C and D are much less affected by the block.  
//these numbers were used because the made the magnesium block curve fit the figures by Moyner et al (1994 figure 7) best by eye.

  create Mg_block {chanpath}/block
  setfield {chanpath}/block CMg {CMg} 
  setfield {chanpath}/block KMg_B {1.0/{gamma}}
  setfield {chanpath}/block KMg_A {KMg}
				
  addmsg {chanpath} {chanpath}/block CHANNEL Gk Ek

  if (ghk==1)  //GHK_yesno is set in Synparams.g
     create ghk {chanpath}/GHK
     setfield {chanpath}/GHK Cout 2 // Carter & Sabatini 2004 uses 2mM, Wolf 5mM
     setfield {chanpath}/GHK valency 2.0
     setfield {chanpath}/GHK T {TEMPERATURE}

    //need to scale the NMDA current according to GHK kluge factor and calcium permeability
     create diffamp {chanpath}/CaCurr
     setfield {chanpath}/CaCurr gain {NMDAfactGHK} saturation 1.0

     addmsg {chanpath}/block {chanpath}/CaCurr PLUS Gk
     addmsg {chanpath}/CaCurr {chanpath}/GHK PERMEABILITY output
  end

  if (nmdacdi==1) //nmdacdi set in synparams.g
    make_NMDA_CDI_gate {chanpath}/NMDA_CDI_gate
    addmsg {chanpath}/NMDA_CDI_gate {chanpath} MOD Gk
  end
end


Loading data, please wait...