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A NN with synaptic depression for testing the effects of connectivity on dynamics (Jacob et al 2019)
 
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Model Information
Model File
Citations
Accession:
261623
Here we used a 10,000 neuron model. The neurons are a mixture of excitatory and inhibitory integrate-and-fire neurons connected with synapses that exhibit synaptic depression. Three different connectivity paradigms were tested to look for spontaneous transition between interictal spiking and seizure: uniform, small-world network, and scale-free. All three model types are included here.
Reference:
1 .
Jacob T, Lillis KP, Wang Z, Swiercz W, Rahmati N, Staley KJ (2019) A Proposed Mechanism for Spontaneous Transitions between Interictal and Ictal Activity.
J Neurosci
39
:557-575
[
PubMed
]
Model Information
(Click on a link to find other models with that property)
Model Type:
Connectionist Network;
Brain Region(s)/Organism:
Mouse;
Hippocampus;
Cell Type(s):
Abstract integrate-and-fire neuron;
Channel(s):
I_K,Na;
Gap Junctions:
Receptor(s):
GabaA;
Glutamate;
Gene(s):
Transmitter(s):
Gaba;
Glutamate;
Simulation Environment:
C or C++ program;
Model Concept(s):
Connectivity matrix;
Epilepsy;
Implementer(s):
Jacob, Theju ;
Search NeuronDB
for information about:
GabaA
;
Glutamate
;
I_K,Na
;
Gaba
;
Glutamate
;
/
JacobEtAl2019
scalefree
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README.txt
BarabasiAlbertCode.cpp
connections.txt
glutamatemap.txt
initialglutamatemap.txt
layer.cpp
layer.h
*
Other models using layer.h:
A NN with synaptic depression for testing the effects of connectivity on dynamics (Jacob et al 2019)
A NN with synaptic depression for testing the effects of connectivity on dynamics (Jacob et al 2019)
macgregor
main.cpp
*
Other models using main.cpp:
A NN with synaptic depression for testing the effects of connectivity on dynamics (Jacob et al 2019)
main_scalefree.cpp
mainRN.cpp
Makefile
*
Other models using Makefile:
A NN with synaptic depression for testing the effects of connectivity on dynamics (Jacob et al 2019)
A NN with synaptic depression for testing the effects of connectivity on dynamics (Jacob et al 2019)
Makefile_scalefree
neuron.cpp
neuron.h
*
Other models using neuron.h:
A NN with synaptic depression for testing the effects of connectivity on dynamics (Jacob et al 2019)
A NN with synaptic depression for testing the effects of connectivity on dynamics (Jacob et al 2019)
parameters.txt
*
Other models using parameters.txt:
A NN with synaptic depression for testing the effects of connectivity on dynamics (Jacob et al 2019)
ScaleFreeComputations.m
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