A NN with synaptic depression for testing the effects of connectivity on dynamics (Jacob et al 2019)

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Accession:261623
Here we used a 10,000 neuron model. The neurons are a mixture of excitatory and inhibitory integrate-and-fire neurons connected with synapses that exhibit synaptic depression. Three different connectivity paradigms were tested to look for spontaneous transition between interictal spiking and seizure: uniform, small-world network, and scale-free. All three model types are included here.
Reference:
1 . Jacob T, Lillis KP, Wang Z, Swiercz W, Rahmati N, Staley KJ (2019) A Proposed Mechanism for Spontaneous Transitions between Interictal and Ictal Activity. J Neurosci 39:557-575 [PubMed]
Model Information (Click on a link to find other models with that property)
Model Type: Connectionist Network;
Brain Region(s)/Organism: Mouse; Hippocampus;
Cell Type(s): Abstract integrate-and-fire neuron;
Channel(s): I_K,Na;
Gap Junctions:
Receptor(s): GabaA; Glutamate;
Gene(s):
Transmitter(s): Gaba; Glutamate;
Simulation Environment: C or C++ program;
Model Concept(s): Connectivity matrix; Epilepsy;
Implementer(s): Jacob, Theju ;
Search NeuronDB for information about:  GabaA; Glutamate; I_K,Na; Gaba; Glutamate;
#!/bin/bash

#./macgregor_uniform_10 < parameters.txt > output_10_1.txt
#mv spikes.txt spikes_10_1.txt

#./macgregor_uniform_15 < parameters.txt > output_15_1.txt
#mv spikes.txt spikes_15_1.txt

#./macgregor_uniform_20 < parameters.txt > output_20_1.txt
#mv spikes.txt spikes_20_1.txt

#./macgregor_uniform_25 < parameters.txt > output_25_1.txt
#mv spikes.txt spikes_25_1.txt

#./macgregor_uniform_30 < parameters.txt > output_30_1.txt
#mv spikes.txt spikes_30_1.txt



#./macgregor_uniform_10 < parameters.txt > output_10_2.txt
#mv spikes.txt spikes_10_2.txt

#./macgregor_uniform_15 < parameters.txt > output_15_2.txt
#mv spikes.txt spikes_15_2.txt

#./macgregor_uniform_20 < parameters.txt > output_20_2.txt
#mv spikes.txt spikes_20_2.txt

#./macgregor_uniform_25 < parameters.txt > output_25_2.txt
#mv spikes.txt spikes_25_2.txt

#./macgregor_uniform_30 < parameters.txt > output_30_2.txt
#mv spikes.txt spikes_30_2.txt



#./macgregor_uniform_10 < parameters.txt > output_10_3.txt
#mv spikes.txt spikes_10_3.txt

#./macgregor_uniform_15 < parameters.txt > output_15_3.txt
#mv spikes.txt spikes_15_3.txt

#./macgregor_uniform_20 < parameters.txt > output_20_3.txt
#mv spikes.txt spikes_20_3.txt

#./macgregor_uniform_25 < parameters.txt > output_25_3.txt
#mv spikes.txt spikes_25_3.txt

#./macgregor_uniform_30 < parameters.txt > output_30_3.txt
#mv spikes.txt spikes_30_3.txt



#./macgregor_uniform_10 < parameters.txt > output_10_4.txt
#mv spikes.txt spikes_10_4.txt

#./macgregor_uniform_15 < parameters.txt > output_15_4.txt
#mv spikes.txt spikes_15_4.txt

#./macgregor_uniform_20 < parameters.txt > output_20_4.txt
#mv spikes.txt spikes_20_4.txt

#./macgregor_uniform_25 < parameters.txt > output_25_4.txt
#mv spikes.txt spikes_25_4.txt

#./macgregor_uniform_30 < parameters.txt > output_30_4.txt
#mv spikes.txt spikes_30_4.txt



./macgregor_uniform_10 < parameters.txt > output_10_5.txt
mv spikes.txt spikes_10_5.txt

./macgregor_uniform_15 < parameters.txt > output_15_5.txt
mv spikes.txt spikes_15_5.txt

./macgregor_uniform_20 < parameters.txt > output_20_5.txt
mv spikes.txt spikes_20_5.txt

./macgregor_uniform_25 < parameters.txt > output_25_5.txt
mv spikes.txt spikes_25_5.txt

./macgregor_uniform_30 < parameters.txt > output_30_5.txt
mv spikes.txt spikes_30_5.txt

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