Multi-area layer-resolved spiking network model of resting-state dynamics in macaque visual cortex

 Download zip file 
Help downloading and running models
See for any updates.
1 . Schmidt M, Bakker R, Shen K, Bezgin G, Diesmann M, van Albada SJ (2018) A multi-scale layer-resolved spiking network model of resting-state dynamics in macaque visual cortical areas. PLoS Comput Biol 14:e1006359 [PubMed]
2 . Schmidt M, Bakker R, Hilgetag CC, Diesmann M, van Albada SJ (2018) Multi-scale account of the network structure of macaque visual cortex. Brain Struct Funct 223:1409-1435 [PubMed]
3 . Schuecker J, Schmidt M, van Albada SJ, Diesmann M, Helias M (2017) Fundamental Activity Constraints Lead to Specific Interpretations of the Connectome. PLoS Comput Biol 13:e1005179 [PubMed]
Model Information (Click on a link to find other models with that property)
Model Type: Realistic Network; Connectionist Network;
Brain Region(s)/Organism: Neocortex; Visual cortex;
Cell Type(s): Abstract integrate-and-fire leaky neuron with exponential post-synaptic current;
Gap Junctions:
Simulation Environment: NEST;
Model Concept(s): Spatio-temporal Activity Patterns; Activity Patterns; Connectivity matrix; Synchronization; Multiscale;
Implementer(s): Schmidt, Maximilian [schmidt.maximilian at]; Schuecker, Jannis ; van Albada, Sacha Jennifer [s.van.albada at];
# Absolute path of repository
base_path = None
# Place to store simulations
data_path = None
# Template for job scripts
jobscript_template = '''
# Instruction for the queuing system

mpirun python {base_path}/ {label}'''

Here is an example for the Slurm queueing system:

# jobscript_template = '''#!/bin/bash
# #SBATCH --job-name MAM
# #SBATCH -o {sim_dir}/{label}.%j.o
# #SBATCH -e {sim_dir}/{label}.%j.e
# #SBATCH --mem=120G
# #SBATCH --time=06:00:00
# #SBATCH --exclusive
# #SBATCH --cpus-per-task={local_num_threads}
# #SBATCH --ntasks={num_processes}
# mpirun python {base_path}/ {label} {network_label}'''

# Command to submit jobs on the local cluster
submit_cmd = None

Loading data, please wait...