Advanced search
SenseLab
SimToolDB
ModelDB Help
User account
Login
Register
Find models by
Model name
First author
Each author
Region(circuits)
Find models for
Cell type
Current
Receptor
Gene
Transmitters
Concept
Simulators
Methods
Find models of
Realistic Networks
Neurons
Electrical synapses (gap junctions)
Chemical synapses
Ion channels
Neuromuscular junctions
Axons
Pathophysiology
Other resources
SenseLab mailing list
ModelDB related resources
Computational neuroscience ecosystem
Models in a git repository
ModelDB is moving. Check out our new site at
https://modeldb.science
.
The corresponding page is
https://modeldb.science/267183
.
HH model of SCN neurons including a transient K+ channel (Bano-Otalora et al 2021)
 
Download zip file
Help downloading and running models
Model Information
Model File
Citations
Accession:
267183
This MATLAB code is associated with the paper "Daily electrical activity in the master circadian clock of a diurnal mammal" by Beatriz Bano-Otalora, Matthew J Moye, Timothy Brown, Robert J Lucas, Casey O Diekman, Mino DC Belle. eLife 2021; 10:e68719 DOI: https://doi.org/10.7554/eLife.68179 It simulates a Hodgkin-Huxley-type model of the electrical activity of suprachiasmatic nucleus (SCN) neurons in the diurnal rodent Rhabdomys pumilio. Model parameters were inferred from current-clamp recordings using data assimilation (DA) algorithms available at https://github.com/mattmoye/neuroDA
Reference:
1 .
Bano-Otalora B, Moye MJ, Brown T, Lucas RJ, Diekman CO, Belle MDC (2021) Daily electrical activity in the master circadian clock of a diurnal mammal
eLife
Model Information
(Click on a link to find other models with that property)
Model Type:
Neuron or other electrically excitable cell;
Brain Region(s)/Organism:
Cell Type(s):
Suprachiasmatic nucleus (SCN) neuron;
Channel(s):
I A;
I Calcium;
I Na,t;
I K;
I h;
I K,leak;
I Na, leak;
Gap Junctions:
Receptor(s):
Gene(s):
Transmitter(s):
Simulation Environment:
MATLAB;
Model Concept(s):
Action Potentials;
Circadian Rhythms;
Depolarization block;
Parameter Fitting;
Implementer(s):
Diekman, Casey O. [casey.o.diekman at njit.edu];
Moye, Matthew;
Saghafi, Soheil;
Search NeuronDB
for information about:
I Na,t
;
I A
;
I K
;
I K,leak
;
I h
;
I Calcium
;
I Na, leak
;
/
ModelDB_Bano-Otalora_and_Moye_etal_2021_eLife
File not selected
<- Select file from this column.
Loading data, please wait...