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Spiking neuron model of the basal ganglia (Humphries et al 2006)
 
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Model Information
Model File
Citations
Accession:
83559
A spiking neuron model of the basal ganglia (BG) circuit (striatum, STN, GP, SNr). Includes: parallel anatomical channels; tonic dopamine; dopamine receptors in striatum, STN, and GP; burst-firing in STN; GABAa, AMPA, and NMDA currents; effects of synaptic location. Model demonstrates selection and switching of input signals. Replicates experimental data on changes in slow-wave (<1 Hz) and gamma-band oscillations within BG nuclei following lesions and pharmacological manipulations.
Reference:
1 .
Humphries MD, Stewart RD, Gurney KN (2006) A physiologically plausible model of action selection and oscillatory activity in the basal ganglia.
J Neurosci
26
:12921-42
[
PubMed
]
Model Information
(Click on a link to find other models with that property)
Model Type:
Realistic Network;
Brain Region(s)/Organism:
Basal ganglia;
Cell Type(s):
Neostriatum medium spiny direct pathway GABA cell;
Subthalamus nucleus projection neuron;
Globus pallidus neuron;
Abstract integrate-and-fire leaky neuron;
Channel(s):
Gap Junctions:
Receptor(s):
Dopaminergic Receptor;
Gene(s):
Transmitter(s):
Dopamine;
Gaba;
Glutamate;
Simulation Environment:
MATLAB;
Model Concept(s):
Oscillations;
Parkinson's;
Action Selection/Decision Making;
Sleep;
Rebound firing;
Implementer(s):
Humphries, Mark D [m.d.humphries at shef.ac.uk];
Search NeuronDB
for information about:
Neostriatum medium spiny direct pathway GABA cell
;
Dopaminergic Receptor
;
Dopamine
;
Gaba
;
Glutamate
;
Download the displayed file
/
BG_spiking_model
LIFtools
Marks tools
Postproc
readme.txt
batch_analyse_stngpe.m
BATCH_BG_heterogenous_AMPA_NMDA.m
BATCH_BG_heterogenous_AMPA_NMDA2.m
batch_selection_grid_DA.m
BG_GHS_inputs.m
BG_net_shunt_AMPA_NMDA.m
BG_net_shunt_AMPA_NMDA2.m
combine_stngpe_analysis.m
extract_spikes.m
GHS_LIF_solver_shunt_AMPA_NMDA.c
GHS_LIF_solver_shunt_AMPA_NMDA.dll
GHS_LIF_solver_shunt_AMPA_NMDA.mexa64
GHS_LIF_solver_shunt_AMPA_NMDA.mexglx
input_grid.mat
mean_outputs.m
models_as_individuals.m
pars.m
pars1b.m
pars2.m
pars3a.m
pars3b.m
pars4a.m
pars4b.m
pars4c.m
pars4d.m
pars5_1a.m
pars5_1b.m
pars5_1c.m
pars5_1d.m
pars5_2a.m
pars5_2b.m
pars5_2c.m
pars5_2d.m
pars5_3a.m
pars5_3b.m
pars5_3c.m
pars5_3d.m
pars5_4a.m
pars5_4b.m
pars5_4c.m
pars5_4d.m
pars5_5a.m
pars5_5b.m
pars5_5c.m
pars5_5d.m
pars5_6d.m
pars6a.m
pars6b.m
pars6c.m
single_run1.m
single_run1b.m
single_run2.m
single_run3a.m
single_run3b.m
single_run4a.m
single_run4b.m
single_run4c.m
single_run4d.m
single_run5_1a.m
single_run5_1b.m
single_run5_1c.m
single_run5_1d.m
single_run5_2a.m
single_run5_2b.m
single_run5_2c.m
single_run5_2d.m
single_run5_3a.m
single_run5_3b.m
single_run5_3c.m
single_run5_3d.m
single_run5_4a.m
single_run5_4b.m
single_run5_4c.m
single_run5_4d.m
single_run5_5a.m
single_run5_5b.m
single_run5_5c.m
single_run5_5d.m
single_run5_6d.m
single_run6a.m
single_run6b.m
single_run6c.m
state.mat
sum_flags.m
sum_flags45.m
sum_flags6.m
User Manual.pdf
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