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Neural Query System NQS Data-Mining From Within the NEURON Simulator (Lytton 2006)
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Accession:
97874
NQS is a databasing program with a query command modeled loosely on the SQL select command. Please see the manual NQS.pdf for details of use. An NQS database must be populated with data to be used. This package includes MFP (model fingerprint) which provides an example of NQS use with the model provided in the modeldb folder (see readme for usage).
Reference:
1 .
Lytton WW (2006) Neural Query System: Data-mining from within the NEURON simulator.
Neuroinformatics
4
:163-76
[
PubMed
]
Model Information
(Click on a link to find other models with that property)
Model Type:
Neuron or other electrically excitable cell;
Brain Region(s)/Organism:
Cell Type(s):
Channel(s):
Gap Junctions:
Receptor(s):
Gene(s):
Transmitter(s):
Simulation Environment:
NEURON;
Model Concept(s):
Methods;
Implementer(s):
Lytton, William [bill.lytton at downstate.edu];
Download the displayed file
/
NQS_with_example
modeldb
readme.txt
*
Other models using readme.txt:
CA1 pyramidal neuron: dendritic spike initiation (Gasparini et al 2004)
exp2i.mod
*
Other models using exp2i.mod:
CA1 pyramidal neuron (Combe et al 2018)
CA1 pyramidal neuron: dendritic spike initiation (Gasparini et al 2004)
h.mod
*
Other models using h.mod:
A 1000 cell network model for Lateral Amygdala (Kim et al. 2013)
CA1 pyramidal neuron synaptic integration (Li and Ascoli 2006, 2008)
CA1 pyramidal neuron: action potential backpropagation (Gasparini & Migliore 2015)
CA1 pyramidal neuron: calculation of MRI signals (Cassara et al. 2008)
CA1 pyramidal neuron: dendritic spike initiation (Gasparini et al 2004)
CA1 pyramidal neuron: effects of Ih on distal inputs (Migliore et al 2004)
CA1 pyramidal neuron: schizophrenic behavior (Migliore et al. 2011)
CA1 pyramidal neuron: signal propagation in oblique dendrites (Migliore et al 2005)
CA1 pyramidal neurons: binding properties and the magical number 7 (Migliore et al. 2008)
CA1 pyramidal neurons: effect of external electric field from power lines (Cavarretta et al. 2014)
CA1 pyramidal neurons: effects of Alzheimer (Culmone and Migliore 2012)
Ca1 pyramidal neuron: reduction model (Marasco et al. 2012)
Computational neuropharmacology of CA1 pyramidal neuron (Ferrante et al. 2008)
Conductance based model for short term plasticity at CA3-CA1 synapses (Mukunda & Narayanan 2017)
Early-onset epileptic encephalopathy (Miceli et al. 2015)
Effect of the initial synaptic state on the probability to induce LTP and LTD (Migliore et al. 2015)
Effects of electric fields on cognitive functions (Migliore et al 2016)
Functional impact of dendritic branch point morphology (Ferrante et al., 2013)
Model of CA1 activity during working memory task (Spera et al. 2016)
Neuronal morphology goes digital ... (Parekh & Ascoli 2013)
STDP and BDNF in CA1 spines (Solinas et al. 2019)
Spine head calcium in a CA1 pyramidal cell model (Graham et al. 2014)
kadist.mod
*
Other models using kadist.mod:
A 1000 cell network model for Lateral Amygdala (Kim et al. 2013)
A model of unitary responses from A/C and PP synapses in CA3 pyramidal cells (Baker et al. 2010)
CA1 pyramidal neuron (Migliore et al 1999)
CA1 pyramidal neuron synaptic integration (Li and Ascoli 2006, 2008)
CA1 pyramidal neuron: action potential backpropagation (Gasparini & Migliore 2015)
CA1 pyramidal neuron: calculation of MRI signals (Cassara et al. 2008)
CA1 pyramidal neuron: conditional boosting of dendritic APs (Watanabe et al 2002)
CA1 pyramidal neuron: dendritic spike initiation (Gasparini et al 2004)
CA1 pyramidal neuron: effects of Ih on distal inputs (Migliore et al 2004)
CA1 pyramidal neuron: effects of Lamotrigine on dendritic excitability (Poolos et al 2002)
CA1 pyramidal neuron: effects of R213Q and R312W Kv7.2 mutations (Miceli et al. 2013)
CA1 pyramidal neuron: functional significance of axonal Kv7 channels (Shah et al. 2008)
CA1 pyramidal neuron: rebound spiking (Ascoli et al.2010)
CA1 pyramidal neuron: schizophrenic behavior (Migliore et al. 2011)
CA1 pyramidal neuron: signal propagation in oblique dendrites (Migliore et al 2005)
CA1 pyramidal neurons: binding properties and the magical number 7 (Migliore et al. 2008)
CA1 pyramidal neurons: effect of external electric field from power lines (Cavarretta et al. 2014)
CA1 pyramidal neurons: effects of Kv7 (M-) channels on synaptic integration (Shah et al. 2011)
CA1 pyramidal neurons: effects of a Kv7.2 mutation (Miceli et al. 2009)
Ca1 pyramidal neuron: reduction model (Marasco et al. 2012)
Calcium waves and mGluR-dependent synaptic plasticity in CA1 pyr. neurons (Ashhad & Narayanan 2013)
Channel density variability among CA1 neurons (Migliore et al. 2018)
Circadian rhythmicity shapes astrocyte morphology and neuronal function in CA1 (McCauley et al 2020)
Computational neuropharmacology of CA1 pyramidal neuron (Ferrante et al. 2008)
Distinct current modules shape cellular dynamics in model neurons (Alturki et al 2016)
Early-onset epileptic encephalopathy (Miceli et al. 2015)
Effect of the initial synaptic state on the probability to induce LTP and LTD (Migliore et al. 2015)
Effects of electric fields on cognitive functions (Migliore et al 2016)
Feedforward inhibition in pyramidal cells (Ferrante & Ascoli 2015)
Functional impact of dendritic branch point morphology (Ferrante et al., 2013)
Model of CA1 activity during working memory task (Spera et al. 2016)
Modulation of hippocampal rhythms by electric fields and network topology (Berzhanskaya et al. 2013)
Neuronal morphology goes digital ... (Parekh & Ascoli 2013)
STDP and BDNF in CA1 spines (Solinas et al. 2019)
Spine head calcium in a CA1 pyramidal cell model (Graham et al. 2014)
Sympathetic Preganglionic Neurone (Briant et al. 2014)
kaprox.mod
*
Other models using kaprox.mod:
CA1 pyramidal neuron (Migliore et al 1999)
CA1 pyramidal neuron synaptic integration (Li and Ascoli 2006, 2008)
CA1 pyramidal neuron: action potential backpropagation (Gasparini & Migliore 2015)
CA1 pyramidal neuron: calculation of MRI signals (Cassara et al. 2008)
CA1 pyramidal neuron: conditional boosting of dendritic APs (Watanabe et al 2002)
CA1 pyramidal neuron: dendritic spike initiation (Gasparini et al 2004)
CA1 pyramidal neuron: effects of Ih on distal inputs (Migliore et al 2004)
CA1 pyramidal neuron: effects of Lamotrigine on dendritic excitability (Poolos et al 2002)
CA1 pyramidal neuron: effects of R213Q and R312W Kv7.2 mutations (Miceli et al. 2013)
CA1 pyramidal neuron: functional significance of axonal Kv7 channels (Shah et al. 2008)
CA1 pyramidal neuron: integration of subthreshold inputs from PP and SC (Migliore 2003)
CA1 pyramidal neuron: rebound spiking (Ascoli et al.2010)
CA1 pyramidal neuron: schizophrenic behavior (Migliore et al. 2011)
CA1 pyramidal neuron: signal propagation in oblique dendrites (Migliore et al 2005)
CA1 pyramidal neurons: binding properties and the magical number 7 (Migliore et al. 2008)
CA1 pyramidal neurons: effect of external electric field from power lines (Cavarretta et al. 2014)
CA1 pyramidal neurons: effects of Alzheimer (Culmone and Migliore 2012)
CA1 pyramidal neurons: effects of Kv7 (M-) channels on synaptic integration (Shah et al. 2011)
CA1 pyramidal neurons: effects of a Kv7.2 mutation (Miceli et al. 2009)
Ca1 pyramidal neuron: reduction model (Marasco et al. 2012)
Calcium waves and mGluR-dependent synaptic plasticity in CA1 pyr. neurons (Ashhad & Narayanan 2013)
Channel density variability among CA1 neurons (Migliore et al. 2018)
Circadian rhythmicity shapes astrocyte morphology and neuronal function in CA1 (McCauley et al 2020)
Computational neuropharmacology of CA1 pyramidal neuron (Ferrante et al. 2008)
Early-onset epileptic encephalopathy (Miceli et al. 2015)
Effect of the initial synaptic state on the probability to induce LTP and LTD (Migliore et al. 2015)
Effects of electric fields on cognitive functions (Migliore et al 2016)
Estimation and Production of Time Intervals (Migliore et al 2001)
Excitability of PFC Basal Dendrites (Acker and Antic 2009)
Feedforward inhibition in pyramidal cells (Ferrante & Ascoli 2015)
Functional impact of dendritic branch point morphology (Ferrante et al., 2013)
Hippocampal Mossy Fiber bouton: presynaptic KV7 channel function (Martinello et al 2019)
Model of CA1 activity during working memory task (Spera et al. 2016)
Modulation of hippocampal rhythms by electric fields and network topology (Berzhanskaya et al. 2013)
Neuronal morphology goes digital ... (Parekh & Ascoli 2013)
Neurophysiological impact of inactivation pathways in A-type K+ channels (Fineberg et al 2012)
STDP and BDNF in CA1 spines (Solinas et al. 2019)
Small world networks of Type I and Type II Excitable Neurons (Bogaard et al. 2009)
Spine head calcium in a CA1 pyramidal cell model (Graham et al. 2014)
Sympathetic Preganglionic Neurone (Briant et al. 2014)
kdrca1.mod
*
Other models using kdrca1.mod:
CA1 pyramidal neuron: dendritic spike initiation (Gasparini et al 2004)
na3s.mod
*
Other models using na3s.mod:
BCM-like synaptic plasticity with conductance-based models (Narayanan Johnston, 2010)
CA1 pyramidal neuron: dendritic spike initiation (Gasparini et al 2004)
naxn.mod
*
Other models using naxn.mod:
CA1 pyramidal neuron synaptic integration (Li and Ascoli 2006, 2008)
CA1 pyramidal neuron: calculation of MRI signals (Cassara et al. 2008)
CA1 pyramidal neuron: dendritic spike initiation (Gasparini et al 2004)
CA1 pyramidal neuron: effects of Ih on distal inputs (Migliore et al 2004)
CA3 pyramidal neuron: firing properties (Hemond et al. 2008)
Computational neuropharmacology of CA1 pyramidal neuron (Ferrante et al. 2008)
Distinct current modules shape cellular dynamics in model neurons (Alturki et al 2016)
Distinct current modules shape cellular dynamics in model neurons (Alturki et al 2016)
Feedforward inhibition in pyramidal cells (Ferrante & Ascoli 2015)
Long time windows from theta modulated inhib. in entorhinal–hippo. loop (Cutsuridis & Poirazi 2015)
Model of CA1 activity during working memory task (Spera et al. 2016)
netstims.mod
*
Other models using netstims.mod:
CA1 pyramidal neuron: calculation of MRI signals (Cassara et al. 2008)
CA1 pyramidal neuron: dendritic spike initiation (Gasparini et al 2004)
CA1 pyramidal neuron: schizophrenic behavior (Migliore et al. 2011)
CA1 pyramidal neuron: signal propagation in oblique dendrites (Migliore et al 2005)
CA1 pyramidal neurons: binding properties and the magical number 7 (Migliore et al. 2008)
CA1 pyramidal neurons: effects of Alzheimer (Culmone and Migliore 2012)
Circadian rhythmicity shapes astrocyte morphology and neuronal function in CA1 (McCauley et al 2020)
Early-onset epileptic encephalopathy (Miceli et al. 2015)
Effect of the initial synaptic state on the probability to induce LTP and LTD (Migliore et al. 2015)
Model of CA1 activity during working memory task (Spera et al. 2016)
Neuronal morphology goes digital ... (Parekh & Ascoli 2013)
Optimal balance predicts/explains amplitude and decay time of iPSGs (Kim & Fiorillo 2017)
STDP and BDNF in CA1 spines (Solinas et al. 2019)
Superior paraolivary nucleus neuron (Kopp-Scheinpflug et al. 2011)
nmdanet.mod
*
Other models using nmdanet.mod:
CA1 pyramidal neuron: dendritic spike initiation (Gasparini et al 2004)
Olfactory Computations in Mitral-Granule cell circuits (Migliore & McTavish 2013)
Olfactory bulb microcircuits model with dual-layer inhibition (Gilra & Bhalla 2015)
Olfactory bulb mitral and granule cell column formation (Migliore et al. 2007)
Olfactory bulb mitral and granule cell: dendrodendritic microcircuits (Migliore and Shepherd 2008)
VTA neurons: Morphofunctional alterations in acute opiates withdrawal (Enrico et al. 2016)
vecst.mod
*
Other models using vecst.mod:
Neural Query System NQS Data-Mining From Within the NEURON Simulator (Lytton 2006)
forfig5A.hoc
*
Other models using forfig5A.hoc:
CA1 pyramidal neuron: dendritic spike initiation (Gasparini et al 2004)
n160.nrn
*
Other models using n160.nrn:
CA1 pyramidal neuron: dendritic spike initiation (Gasparini et al 2004)
Homeostatic synaptic plasticity (Rabinowitch and Segev 2006a,b)
orig_mosinit.hoc
*
Other models using orig_mosinit.hoc:
CA1 pyramidal neuron: dendritic spike initiation (Gasparini et al 2004)
load_file("forfig5A.hoc")
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