Citation Relationships



Cannon RC, Gewaltig MO, Gleeson P, Bhalla US, Cornelis H, Hines ML, Howell FW, Muller E, Stiles JR, Wils S, De Schutter E (2007) Interoperability of neuroscience modeling software: current status and future directions. Neuroinformatics 5:127-38 [PubMed]

References and models cited by this paper

References and models that cite this paper

Brette R, Goodman DF (2011) Vectorized algorithms for spiking neural network simulation. Neural Comput 23:1503-35 [Journal] [PubMed]

   Vectorized algorithms for spiking neural network simulation (Brette and Goodman 2011) [Model]

Djurfeldt M (2012) The connection-set algebra--a novel formalism for the representation of connectivity structure in neuronal network models. Neuroinformatics 10:287-304 [Journal] [PubMed]

   Connection-set Algebra (CSA) for the representation of connectivity in NN models (Djurfeldt 2012) [Model]

Gewaltig MO, Cannon R (2014) Current practice in software development for computational neuroscience and how to improve it. PLoS Comput Biol 10:e1003376 [Journal] [PubMed]

Gleeson P, Crook S, Cannon RC, Hines ML, Billings GO, Farinella M, Morse TM, Davison AP, Ray S, Bhalla US, Barnes SR, Dimitrova YD, Silver RA (2010) NeuroML: a language for describing data driven models of neurons and networks with a high degree of biological detail. PLoS Comput Biol 6:e1000815 [Journal] [PubMed]

Gleeson P, Steuber V, Silver RA (2007) neuroConstruct: a tool for modeling networks of neurons in 3D space. Neuron 54:219-35 [Journal] [PubMed]

Manninen T, Havela R, Linne ML (2017) Reproducibility and comparability of computational models for astrocyte calcium excitability Front. Neuroinform. [Journal]

   Ca2+ oscillations in single astrocytes (Lavrentovich and Hemkin 2008) (python) (Manninen et al 2017) [Model]
   Glutamate-evoked Ca2+ oscillations in single astrocytes (Modified from Dupont et al. 2011) [Model]
   Glutamate-evoked Ca2+ oscillations in single astrocytes (De Pitta et al. 2009) (Manninen et al 2017) [Model]
   Reproducibility and comparability of models for astrocyte Ca2+ excitability (Manninen et al 2017) [Model]
   Spontaneous calcium oscillations in single astrocytes (Riera et al. 2011) (Manninen et al 2017) [Model]

McDougal RA, Bulanova AS, Lytton WW (2016) Reproducibility in Computational Neuroscience Models and Simulations. IEEE Trans Biomed Eng 63:2021-35 [Journal] [PubMed]

McDougal RA, Hines ML, Lytton WW (2013) Reaction-diffusion in the NEURON simulator. Front Neuroinform 7:28 [Journal] [PubMed]

   Reaction-diffusion in the NEURON simulator (McDougal et al 2013) [Model]

Ray S, Bhalla US (2008) PyMOOSE: Interoperable Scripting in Python for MOOSE. Front Neuroinform 2:6 [Journal] [PubMed]

   Moose/PyMOOSE: interoperable scripting in Python for MOOSE (Ray and Bhalla 2008) [Model]

Sterratt D, Graham B, Gillies A, Willshaw D (2011) Principles of Computational Modelling in Neuroscience, Cambridge University Press :1-401 [Journal]

   Principles of Computational Modelling in Neuroscience (Book) (Sterratt et al. 2011) [Model]

Versace M, Ames H, Léveillé J, Fortenberry B, Gorchetchnikov A (2008) KInNeSS: a modular framework for computational neuroscience. Neuroinformatics 6:291-309 [Journal] [PubMed]

   KInNeSS : a modular framework for computational neuroscience (Versace et al. 2008) [Model]

(11 refs)