Citation Relationships



Davison AP, Bruderle D, Eppler J, Kremkow J, Muller E, Pecevski D, Perrinet L, Yger P (2008) PyNN: A Common Interface for Neuronal Network Simulators. Front Neuroinformatics 2:11-93[PubMed]

References and models cited by this paper

References and models that cite this paper

Brette R, Goodman DF (2011) Vectorized Algorithms for Spiking Neural Network Simulation. Neural Comput [Journal] [PubMed]

   Vectorized algorithms for spiking neural network simulation (Brette and Goodman 2011) [Model]

Chen W, De Schutter E (2014) Python-based geometry preparation and simulation visualization toolkits for STEPS Front. Neuroinform. 8:37 [Journal]

   Python-based toolkits for STEPS (Chen and De Schutter 2014) [Model]

Djurfeldt M (2012) The Connection-set Algebra-A Novel Formalism for the Representation of Connectivity Structure in Neuronal Network Models Neuroinformatics 10(3):287-304 [Journal] [PubMed]

   Connection-set Algebra (CSA) for the representation of connectivity in NN models (Djurfeldt 2012) [Model]

Eglen SJ, Marwick B, Halchenko YO, Hanke M, Sufi S, Gleeson P, Silver RA, Davison AP, Lanyon L, Abrams M, Wachtler T, Willshaw DJ, Pouzat C, Poline JB (2017) Toward standard practices for sharing computer code and programs in neuroscience. Nat Neurosci 20:770-773 [Journal] [PubMed]

Evans BD, Jarvis S, Schultz SR, Nikolic K (2016) PyRhO: A Multiscale Optogenetics Simulation Platform. Front Neuroinform 10:8 [Journal] [PubMed]

   PyRhO: A multiscale optogenetics simulation platform (Evans et al 2016) [Model]

Friedrich P, Vella M, Gulyas AI, Freund TF, Kali S (2014) A flexible, interactive software tool for fitting the parameters of neuronal models. Front Neuroinform 8:63 [Journal] [PubMed]

   Software (called Optimizer) for fitting neuronal models (Friedrich et al. 2014) [Model]

Gewaltig MO, Cannon R (2014) Current practice in software development for computational neuroscience and how to improve it. PLoS Comput Biol 10:e1003376 [PubMed]

Gleeson P, Crook S, Cannon RC, Hines ML, Billings GO, Farinella M, Morse TM, Davison AP, Ray (2010) NeuroML: a language for describing data driven models of neurons and networks with a high degree of biological detail. PLoS Comput Biol 6:e1000815 [Journal] [PubMed]

Lytton WW, Seidenstein AH, Dura-Bernal S, McDougal RA, Schurmann F, Hines ML (2016) Simulation Neurotechnologies for Advancing Brain Research: Parallelizing Large Networks in NEURON. Neural Comput :1-28 [Journal] [PubMed]

   Parallelizing large networks in NEURON (Lytton et al. 2016) [Model]

Marre O, Yger P, Davison AP, Fregnac Y (2009) Reliable Recall of Spontaneous Activity Patterns in Cortical Networks J. Neurosci. 29(46):14596-14696 [Journal]

Mattioni M, Cohen U, Le Novere N (2012) Neuronvisio: A Graphical User Interface with 3D Capabilities for NEURON. Front Neuroinform 6:20 [Journal] [PubMed]

   Neuronvisio: a gui with 3D capabilities for NEURON (Mattioni et al. 2012) [Model]

McDougal RA, Bulanova AS, Lytton WW (2016) Reproducibility in computational neuroscience models and simulations IEEE Trans Biomed Eng 63(10):2021-2035 [Journal] [PubMed]

McDougal RA, Morse TM, Hines ML, Shepherd GM (2015) ModelView for ModelDB: online presentation of model structure Neuroinformatics 13(4):459-70 [Journal] [PubMed]

   ModelView: online structural analysis of computational models (McDougal et al. 2015) [Model]

Richert M, Nageswaran JM, Dutt N, Krichmar JL (2011) An efficient simulation environment for modeling large-scale cortical processing. Front Neuroinform 5:19 [Journal] [PubMed]

   Efficient simulation environment for modeling large-scale cortical processing (Richert et al. 2011) [Model]

Richmond P, Buesing L, Giugliano M, Vasilaki E (2011) Democratic population decisions result in robust policy-gradient learning: a parametric study with GPU simulations. PLoS One 6:e18539-58 [Journal] [PubMed]

   Democratic population decisions result in robust policy-gradient learning (Richmond et al. 2011) [Model]

Sen-Bhattacharya B, Serrano-Gotarredona T, Balassa L, Bhattacharya A, Stokes AB, Rowley A, Sugiarto I, Furber S (2017) A Spiking Neural Network Model of the Lateral Geniculate Nucleus on the SpiNNaker Machine. Front Neurosci 11:454 [Journal] [PubMed]

   A spiking neural network model of the Lateral Geniculate Nucleus (Sen-Bhattacharya et al 2017) [Model]

Singh N, Huyck C, Gandhi V, Jones A (2016) Neuron-Based Control Mechanisms for a Robotic Arm and Hand ICMRRS 2017: International Conference on Medical Robotics and Robotics for Surgery, Paris, France 3(2):660 [Journal]

   Neuron-based control mechanisms for a robotic arm and hand (Singh et al 2017) [Model]

Stockton DB, Santamaria F (2015) NeuroManager: a workflow analysis based simulation management engine for computational neuroscience. Front Neuroinform 9:24 [Journal] [PubMed]

   NeuroManager: a workflow analysis based simulation management engine (Stockton & Santamaria 2015) [Model]

Tikidji-Hamburyan RA, Narayana V, Bozkus Z, El-Ghazawi TA (2017) Software for Brain Network Simulations: A Comparative Study Front. Neuroinform. [Journal]

   Brain networks simulators - a comparative study (Tikidji-Hamburyan et al 2017) [Model]

Tomm C, Avermann M, Petersen C, Gerstner W, Vogels TP (2014) Connection-type-specific biases make uniform random network models consistent with cortical recordings J Neurophysiol, in press

(20 refs)