Citation Relationships



Hendrickson EB, Edgerton JR, Jaeger D (2011) The use of automated parameter searches to improve ion channel kinetics for neural modeling. J Comput Neurosci[PubMed]

References and models cited by this paper

References and models that cite this paper

Achard P, De Schutter E (2006) Complex parameter landscape for a complex neuron model. PLoS Comput Biol 2:e94 [PubMed]

Allen M, Heinzmann A, Noguchi E, Abecasis G, Broxholme J, Ponting CP, Bhattacharyya S, Tinsle (2003) Positional cloning of a novel gene influencing asthma from chromosome 2q14. Nat Genet 35:258-63 [PubMed]

Bar-Yehuda D, Korngreen A (2008) Space clamp problems when voltage clamping neurons expressing voltage-gated conductances. J Neurophysiol 99(3):1127-33 [Journal] [PubMed]

   Space clamp problems in neurons with voltage-gated conductances (Bar-Yehuda and Korngreen 2008) [Model]

Bush K, Knight J, Anderson C (2005) Optimizing conductance parameters of cortical neural models via electrotonic partitions. Neural Netw 18:488-96 [PubMed]

Clerc M, Kennedy J (2002) The particle swarm-Explosion, stability, and convergence in a multidimensional complex space Ieee Transactions On Evolutionary Computation 6:58-73

Colbert CM, Johnston D (1996) Axonal action-potential initiation and Na+ channel densities in the soma and axon initial segment of subicular pyramidal neurons. J Neurosci 16:6676-86 [PubMed]

Davison AP, Feng J, Brown D (2000) A reduced compartmental model of the mitral cell for use in network models of the olfactory bulb. Brain Res Bull 51:393-9 [Journal] [PubMed]

   Olfactory Mitral Cell (Davison et al 2000) [Model]

Druckmann S, Berger TK, Hill S, Schurmann F, Markram H, Segev I (2008) Evaluating automated parameter constraining procedures of neuron models by experimental and surrogate data. Biol Cybern 99:371-9 [PubMed]

Gentet LJ, Stuart GJ, Clements JD (2000) Direct measurement of specific membrane capacitance in neurons. Biophys J 79:314-20 [PubMed]

Gerken WC, Purvis LK, Butera RJ (2006) Genetic algorithm for optimization and specification of a neuron model Neurocomputing 69:1039-1042

Grieco TM, Afshari FS, Raman IM (2002) A role for phosphorylation in the maintenance of resurgent sodium current in cerebellar purkinje neurons. J Neurosci 22:3100-7 [PubMed]

Gunay C, Edgerton JR, Jaeger D (2008) Channel density distributions explain spiking variability in the globus pallidus: a combined physiology and computer simulation database approach. J Neurosci 28:7476-91 [Journal] [PubMed]

   Globus pallidus multi-compartmental model neuron with realistic morphology (Gunay et al. 2008) [Model]

Hanson JE, Smith Y, Jaeger D (2004) Sodium channels and dendritic spike initiation at excitatory synapses in globus pallidus neurons. J Neurosci 24:329-40 [PubMed]

Hendrickson EB, Edgerton JR, Jaeger D (2011) The capabilities and limitations of conductance-based compartmental neuron models with reduced branched or unbranched morphologies and active dendrites. J. Comp. Neurosci. 30(2):301-321 [Journal] [PubMed]

   Comparison of full and reduced globus pallidus models (Hendrickson 2010) [Model]

Herzog RI, Liu C, Waxman SG, Cummins TR (2003) Calmodulin binds to the C terminus of sodium channels Nav1.4 and Nav1.6 and differentially modulates their functional properties. J Neurosci 23:8261-70 [PubMed]

Hoffman DA, Johnston D (1998) Downregulation of transient K+ channels in dendrites of hippocampal CA1 pyramidal neurons by activation of PKA and PKC. J Neurosci 18:3521-8 [PubMed]

Jerng HH, Qian Y, Pfaffinger PJ (2004) Modulation of Kv4.2 channel expression and gating by dipeptidyl peptidase 10 (DPP10). Biophys J 87:2380-96 [PubMed]

Keren N, Peled N, Korngreen A (2005) Constraining compartmental models using multiple voltage recordings and genetic algorithms. J Neurophysiol 94:3730-42 [Journal] [PubMed]

Kole MH, Ilschner SU, Kampa BM, Williams SR, Ruben PC, Stuart GJ (2008) Action potential generation requires a high sodium channel density in the axon initial segment. Nat Neurosci 11:178-86 [Journal] [PubMed]

   Na+ channel dependence of AP initiation in cortical pyramidal neuron (Kole et al. 2008) [Model]

McCormick DA, Shu Y, Yu Y (2007) Hodgkin and Huxley model still standing? Nature 445:E1-E2 [Journal] [PubMed]

   AP back-prop. explains threshold variability and rapid rise (McCormick et al. 2007, Yu et al. 2008) [Model]

Mercer JN, Chan CS, Tkatch T, Held J, Surmeier DJ (2007) Nav1.6 sodium channels are critical to pacemaking and fast spiking in globus pallidus neurons. J Neurosci 27:13552-66 [Journal] [PubMed]

   Nav1.6 sodium channel model in globus pallidus neurons (Mercer et al. 2007) [Model]

Myers JL, Well AD (2003) Research design and statistical analysis (2nd ed.)

Newton AC (1995) Protein kinase C: structure, function, and regulation. J Biol Chem 270:28495-8

Oltedal L, Veruki ML, Hartveit E (2009) Passive membrane properties and electrotonic signal processing in retinal rod bipolar cells. J Physiol 587:829-49 [Journal] [PubMed]

Park KS, Mohapatra DP, Misonou H, Trimmer JS (2006) Graded regulation of the Kv2.1 potassium channel by variable phosphorylation. Science 313:976-9 [PubMed]

Park KS, Yang JW, Seikel E, Trimmer JS (2008) Potassium channel phosphorylation in excitable cells: providing dynamic functional variability to a diverse family of ion channels. Physiology (Bethesda) 23:49-57 [PubMed]

Prinz AA, Billimoria CP, Marder E (2003) Alternative to hand-tuning conductance-based models: construction and analysis of databases of model neurons. J Neurophysiol 90:3998-4015 [Journal] [PubMed]

Rossie S (1999) Regulation of voltage-sensitive sodium and calcium channels by phosphorylation Ion channel regulation :23-48

Roth A, Hausser M (2001) Compartmental models of rat cerebellar Purkinje cells based on simultaneous somatic and dendritic patch-clamp recordings. J Physiol 535:445-72 [PubMed]

Routh BN, Johnston D, Harris K, Chitwood RA (2009) Anatomical and electrophysiological comparison of CA1 pyramidal neurons of the rat and mouse. J Neurophysiol 102:2288-302 [PubMed]

Rush AM, Wittmack EK, Tyrrell L, Black JA, Dib-Hajj SD, Waxman SG (2006) Differential modulation of sodium channel Na(v)1.6 by two members of the fibroblast growth factor homologous factor 2 subfamily. Eur J Neurosci 23:2551-62 [PubMed]

Rusnak F, Mertz P (2000) Calcineurin: form and function. Physiol Rev 80:1483-521 [PubMed]

Schulz DJ, Goaillard JM, Marder E (2006) Variable channel expression in identified single and electrically coupled neurons in different animals. Nat Neurosci 9:356-62 [PubMed]

Stuart G, Spruston N (1998) Determinants of voltage attenuation in neocortical pyramidal neuron dendrites. J Neurosci 18:3501-10 [PubMed]

   Pyramidal Neuron Deep: attenuation in dendrites (Stuart, Spruston 1998) [Model]

Taylor AL, Goaillard JM, Marder E (2009) How multiple conductances determine electrophysiological properties in a multicompartment model. J Neurosci 29:5573-86 [PubMed]

Tien JH, Guckenheimer J (2008) Parameter estimation for bursting neural models. J Comput Neurosci 24:358-73 [PubMed]

Tkatch T, Baranauskas G, Surmeier DJ (2000) Kv4.2 mRNA abundance and A-type K(+) current amplitude are linearly related in basal ganglia and basal forebrain neurons. J Neurosci 20:579-88 [PubMed]

Van Geit W, De Schutter E, Achard P (2008) Automated neuron model optimization techniques: a review. Biol Cybern 99:241-51

Vanier MC, Bower JM (1999) A comparative survey of automated parameter-search methods for compartmental neural models. J Comput Neurosci 7:149-71 [Journal] [PubMed]

Weaver CM, Wearne SL (2006) The role of action potential shape and parameter constraints in optimization of compartment models Neurocomputing 69:1053-1057 [Journal]

   AP shape and parameter constraints in optimization of compartment models (Weaver and Wearne 2006) [Model]

Friedrich P, Vella M, Gulyas AI, Freund TF, Kali S (2014) A flexible, interactive software tool for fitting the parameters of neuronal models. Front Neuroinform 8:63 [Journal] [PubMed]

   Software (called Optimizer) for fitting neuronal models (Friedrich et al. 2014) [Model]

(41 refs)