Citation Relationships



Ashhad S, Narayanan R (2013) Quantitative interactions between the A-type K+ current and inositol trisphosphate receptors regulate intraneuronal Ca2+ waves and synaptic plasticity. J Physiol 591:1645-69 [PubMed]

   Calcium waves and mGluR-dependent synaptic plasticity in CA1 pyr. neurons (Ashhad & Narayanan 2013)

References and models cited by this paper

References and models that cite this paper

Abdul-Ghani MA, Valiante TA, Carlen PL, Pennefather PS (1996) Metabotropic glutamate receptors coupled to IP3 production mediate inhibition of IAHP in rat dentate granule neurons. J Neurophysiol 76:2691-700 [Journal] [PubMed]

Adelman JP, Maylie J, Sah P (2012) Small-conductance Ca2+-activated K+ channels: form and function. Annu Rev Physiol 74:245-69 [Journal] [PubMed]

Allbritton NL, Meyer T, Stryer L (1992) Range of messenger action of calcium ion and inositol 1,4,5-trisphosphate. Science 258:1812-5 [PubMed]

Anwyl R (1999) Metabotropic glutamate receptors: electrophysiological properties and role in plasticity. Brain Res Brain Res Rev 29:83-120 [PubMed]

Ascoli GA, Donohue DE, Halavi M (2007) NeuroMorpho.Org: a central resource for neuronal morphologies. J Neurosci 27:9247-51 [Journal] [PubMed]

Augustine GJ, Santamaria F, Tanaka K (2003) Local calcium signaling in neurons. Neuron 40:331-46 [PubMed]

Bernard C, Anderson A, Becker A, Poolos NP, Beck H, Johnston D (2004) Acquired dendritic channelopathy in temporal lobe epilepsy. Science 305:532-5 [Journal] [PubMed]

Berridge MJ (2002) The endoplasmic reticulum: a multifunctional signaling organelle. Cell Calcium 32:235-49 [PubMed]

Berridge MJ (2006) Calcium microdomains: organization and function. Cell Calcium 40:405-12 [Journal] [PubMed]

Berridge MJ, Lipp P, Bootman MD (2000) The versatility and universality of calcium signalling. Nat Rev Mol Cell Biol 1:11-21 [Journal] [PubMed]

Bezprozvanny I, Watras J, Ehrlich BE (1991) Bell-shaped calcium-response curves of Ins(1,4,5)P3- and calcium-gated channels from endoplasmic reticulum of cerebellum. Nature 351:751-4 [Journal] [PubMed]

Bhalla US, Iyengar R (1999) Emergent properties of networks of biological signaling pathways. Science 283:381-7 [PubMed]

   Emergent properties of networks of biological signaling pathways (Bhalla, Iyengar 1999) [Model]

Blackwell KT (2005) Modeling calcium concentration and biochemical react ions Brains Minds Media 1. Available: http:--www.brains-minds-media.org-archive-224-

Brager DH, Johnston D (2007) Plasticity of intrinsic excitability during long-term depression is mediated through mGluR-dependent changes in I(h) in hippocampal CA1 pyramidal neurons. J Neurosci 27:13926-37 [Journal] [PubMed]

Budde T, Meuth S, Pape HC (2002) Calcium-dependent inactivation of neuronal calcium channels. Nat Rev Neurosci 3:873-83 [Journal] [PubMed]

Canavier CC (1999) Sodium dynamics underlying burst firing and putative mechanisms for the regulation of the firing pattern in midbrain dopamine neurons: a computational approach. J Comput Neurosci 6:49-69 [PubMed]

   Midbrain dopamine neuron: firing patterns (Canavier 1999) [Model]

Chen X, Yuan LL, Zhao C, Birnbaum SG, Frick A, Jung WE, Schwarz TL, Sweatt JD, Johnston D (2006) Deletion of Kv4.2 gene eliminates dendritic A-type K+ current and enhances induction of long-term potentiation in hippocampal CA1 pyramidal neurons. J Neurosci 26:12143-51 [Journal] [PubMed]

Choe CU, Ehrlich BE (2006) The inositol 1,4,5-trisphosphate receptor (IP3R) and its regulators: sometimes good and sometimes bad teamwork. Sci STKE 2006:re15 [Journal] [PubMed]

Clapham DE (2007) Calcium signaling. Cell 131:1047-58 [Journal] [PubMed]

Colbert CM, Magee JC, Hoffman DA, Johnston D (1997) Slow recovery from inactivation of Na+ channels underlies the activity-dependent attenuation of dendritic action potentials in hippocampal CA1 pyramidal neurons. J Neurosci 17:6512-21 [PubMed]

Cornelisse LN, van Elburg RA, Meredith RM, Yuste R, Mansvelder HD (2007) High speed two-photon imaging of calcium dynamics in dendritic spines: consequences for spine calcium kinetics and buffer capacity. PLoS One 2:e1073 [Journal] [PubMed]

   Determinants of fast calcium dynamics in dendritic spines and dendrites (Cornelisse et al. 2007) [Model]

De Young GW, Keizer J (1992) A single-pool inositol 1,4,5-trisphosphate-receptor-based model for agonist-stimulated oscillations in Ca2+ concentration. Proc Natl Acad Sci U S A 89:9895-9 [PubMed]

Dingledine R, Borges K, Bowie D, Traynelis SF (1999) The glutamate receptor ion channels. Pharmacol Rev 51:7-61 [PubMed]

Doi T, Kuroda S, Michikawa T, Kawato M (2005) Inositol 1,4,5-trisphosphate-dependent Ca2+ threshold dynamics detect spike timing in cerebellar Purkinje cells. J Neurosci 25:950-61 [Journal] [PubMed]

   Spike timing detection in different forms of LTD (Doi et al 2005) [Model]

Dudek SM, Bear MF (1992) Homosynaptic long-term depression in area CA1 of hippocampus and effects of N-methyl-D-aspartate receptor blockade. Proc Natl Acad Sci U S A 89:4363-7 [PubMed]

Dudman JT, Tsay D, Siegelbaum SA (2007) A role for synaptic inputs at distal dendrites: instructive signals for hippocampal long-term plasticity. Neuron 56:866-79 [Journal] [PubMed]

El-Hassar L, Hagenston AM, D'Angelo LB, Yeckel MF (2011) Metabotropic glutamate receptors regulate hippocampal CA1 pyramidal neuron excitability via Ca²? wave-dependent activation of SK and TRPC channels. J Physiol 589:3211-29 [Journal] [PubMed]

Emptage NJ, Reid CA, Fine A (2001) Calcium stores in hippocampal synaptic boutons mediate short-term plasticity, store-operated Ca2+ entry, and spontaneous transmitter release. Neuron 29:197-208 [PubMed]

Fink CC, Slepchenko B, Moraru II, Watras J, Schaff JC, Loew LM (2000) An image-based model of calcium waves in differentiated neuroblastoma cells. Biophys J 79:163-83 [Journal] [PubMed]

   Calcium waves in neuroblastoma cells (Fink et al. 2000) [Model]

Fleidervish IA, Lasser-Ross N, Gutnick MJ, Ross WN (2010) Na+ imaging reveals little difference in action potential-evoked Na+ influx between axon and soma. Nat Neurosci 13:852-60 [Journal] [PubMed]

   Action potential-evoked Na+ influx are similar in axon and soma (Fleidervish et al. 2010) [Model]
   Action potential-evoked Na+ influx similar in axon and soma (Fleidervish et al. 2010) (Python) [Model]

Frick A, Magee J, Johnston D (2004) LTP is accompanied by an enhanced local excitability of pyramidal neuron dendrites. Nat Neurosci 7:126-35 [Journal] [PubMed]

Frick A, Magee J, Koester HJ, Migliore M, Johnston D (2003) Normalization of Ca2+ signals by small oblique dendrites of CA1 pyramidal neurons. J Neurosci 23:3243-50 [PubMed]

Hansel C, Linden DJ, D'Angelo E (2001) Beyond parallel fiber LTD: the diversity of synaptic and non-synaptic plasticity in the cerebellum. Nat Neurosci 4:467-75 [Journal] [PubMed]

Hasselmo ME (1995) Neuromodulation and cortical function: modeling the physiological basis of behavior. Behav Brain Res 67:1-27 [PubMed]

Helmchen F, Imoto K, Sakmann B (1996) Ca2+ buffering and action potential-evoked Ca2+ signaling in dendrites of pyramidal neurons. Biophys J 70:1069-81 [Journal] [PubMed]

Herrington J, Park YB, Babcock DF, Hille B (1996) Dominant role of mitochondria in clearance of large Ca2+ loads from rat adrenal chromaffin cells. Neuron 16:219-28 [PubMed]

Hertle DN, Yeckel MF (2007) Distribution of inositol-1,4,5-trisphosphate receptor isotypes and ryanodine receptor isotypes during maturation of the rat hippocampus. Neuroscience 150:625-38 [Journal] [PubMed]

Hoffman DA, Johnston D (1999) Neuromodulation of dendritic action potentials. J Neurophysiol 81:408-11 [Journal] [PubMed]

Hoffman DA, Magee JC, Colbert CM, Johnston D (1997) K+ channel regulation of signal propagation in dendrites of hippocampal pyramidal neurons. Nature 387:869-75 [Journal] [PubMed]

Huber KM, Kayser MS, Bear MF (2000) Role for rapid dendritic protein synthesis in hippocampal mGluR-dependent long-term depression. Science 288:1254-7 [PubMed]

Ito M (2002) The molecular organization of cerebellar long-term depression. Nat Rev Neurosci 3:896-902 [Journal] [PubMed]

Jahr CE, Stevens CF (1990) Voltage dependence of NMDA-activated macroscopic conductances predicted by single-channel kinetics. J Neurosci 10:3178-82 [PubMed]

Johnston D, Christie BR, Frick A, Gray R, Hoffman DA, Schexnayder LK, Watanabe S, Yuan LL (2003) Active dendrites, potassium channels and synaptic plasticity. Philos Trans R Soc Lond B Biol Sci 358:667-74 [Journal] [PubMed]

Johnston D, Magee JC, Colbert CM, Cristie BR (1996) Active properties of neuronal dendrites. Annu Rev Neurosci 19:165-86 [Journal] [PubMed]

Jung SC, Kim J, Hoffman DA (2008) Rapid, bidirectional remodeling of synaptic NMDA receptor subunit composition by A-type K+ channel activity in hippocampal CA1 pyramidal neurons. Neuron 60:657-71 [Journal] [PubMed]

Kanold PO, Manis PB (1999) Transient potassium currents regulate the discharge patterns of dorsal cochlear nucleus pyramidal cells. J Neurosci 19:2195-208 [PubMed]

   CN pyramidal fusiform cell (Kanold, Manis 2001) [Model]

Kato HK, Kassai H, Watabe AM, Aiba A, Manabe T (2012) Functional coupling of the metabotropic glutamate receptor, InsP3 receptor and L-type Ca2+ channel in mouse CA1 pyramidal cells. J Physiol 590:3019-34 [Journal] [PubMed]

Kennedy MB, Beale HC, Carlisle HJ, Washburn LR (2005) Integration of biochemical signalling in spines. Nat Rev Neurosci 6:423-34 [Journal] [PubMed]

Kerti K, Lorincz A, Nusser Z (2012) Unique somato-dendritic distribution pattern of Kv4.2 channels on hippocampal CA1 pyramidal cells. Eur J Neurosci 35:66-75 [Journal] [PubMed]

Kim J, Jung SC, Clemens AM, Petralia RS, Hoffman DA (2007) Regulation of dendritic excitability by activity-dependent trafficking of the A-type K+ channel subunit Kv4.2 in hippocampal neurons. Neuron 54:933-47 [Journal] [PubMed]

Kim J, Wei DS, Hoffman DA (2005) Kv4 potassium channel subunits control action potential repolarization and frequency-dependent broadening in rat hippocampal CA1 pyramidal neurones. J Physiol 569:41-57 [Journal] [PubMed]

Klingauf J, Neher E (1997) Modeling buffered Ca2+ diffusion near the membrane: implications for secretion in neuroendocrine cells. Biophys J 72:674-90 [PubMed]

Kotaleski JH, Blackwell KT (2010) Modelling the molecular mechanisms of synaptic plasticity using systems biology approaches. Nat Rev Neurosci 11:239-51 [Journal] [PubMed]

Larson J, Wong D, Lynch G (1986) Patterned stimulation at the theta frequency is optimal for the induction of hippocampal long-term potentiation. Brain Res 368:347-50 [PubMed]

Lewis RS (2011) Store-operated calcium channels: new perspectives on mechanism and function. Cold Spring Harb Perspect Biol 3: -58

Li YX, Rinzel J (1994) Equations for InsP3 receptor-mediated [Ca2+]i oscillations derived from a detailed kinetic model: a Hodgkin-Huxley like formalism. J Theor Biol 166:461-73 [Journal] [PubMed]

Lisman J (1989) A mechanism for the Hebb and the anti-Hebb processes underlying learning and memory. Proc Natl Acad Sci U S A 86:9574-8 [PubMed]

Lisman JE (2001) Three Ca2+ levels affect plasticity differently: the LTP zone, the LTD zone and no man's land. J Physiol 532:285 [PubMed]

Losonczy A, Magee JC (2006) Integrative properties of radial oblique dendrites in hippocampal CA1 pyramidal neurons. Neuron 50:291-307 [Journal] [PubMed]

Losonczy A, Makara JK, Magee JC (2008) Compartmentalized dendritic plasticity and input feature storage in neurons. Nature 452:436-41 [Journal] [PubMed]

Lujan R, Nusser Z, Roberts JD, Shigemoto R, Somogyi P (1996) Perisynaptic location of metabotropic glutamate receptors mGluR1 and mGluR5 on dendrites and dendritic spines in the rat hippocampus. Eur J Neurosci 8:1488-500 [PubMed]

Lytton J, Westlin M, Burk SE, Shull GE, MacLennan DH (1992) Functional comparisons between isoforms of the sarcoplasmic or endoplasmic reticulum family of calcium pumps. J Biol Chem 267:14483-9 [PubMed]

Magee JC, Johnston D (1995) Characterization of single voltage-gated Na+ and Ca2+ channels in apical dendrites of rat CA1 pyramidal neurons. J Physiol 487:67-90 [PubMed]

Manita S, Miyazaki K, Ross WN (2011) Synaptically activated Ca2+ waves and NMDA spikes locally suppress voltage-dependent Ca2+ signalling in rat pyramidal cell dendrites. J Physiol 589:4903-20 [Journal] [PubMed]

Mayer ML, Westbrook GL (1987) Permeation and block of N-methyl-D-aspartic acid receptor channels by divalent cations in mouse cultured central neurones. J Physiol 394:501-27 [PubMed]

Meldolesi J, Pozzan T (1998) The endoplasmic reticulum Ca2+ store: a view from the lumen. Trends Biochem Sci 23:10-4 [PubMed]

Migliore M, Hoffman DA, Magee JC, Johnston D (1999) Role of an A-type K+ conductance in the back-propagation of action potentials in the dendrites of hippocampal pyramidal neurons. J Comput Neurosci 7:5-15 [PubMed]

   CA1 pyramidal neuron (Migliore et al 1999) [Model]

Mikoshiba K (2006) Inositol 1,4,5-trisphosphate IP(3) receptors and their role in neuronal cell function. J Neurochem 97:1627-33 [Journal] [PubMed]

Nakamura T, Barbara JG, Nakamura K, Ross WN (1999) Synergistic release of Ca2+ from IP3-sensitive stores evoked by synaptic activation of mGluRs paired with backpropagating action potentials. Neuron 24:727-37 [PubMed]

Nakamura T, Lasser-Ross N, Nakamura K, Ross WN (2002) Spatial segregation and interaction of calcium signalling mechanisms in rat hippocampal CA1 pyramidal neurons. J Physiol 543:465-80 [PubMed]

Nakamura T, Nakamura K, Lasser-Ross N, Barbara JG, Sandler VM, Ross WN (2000) Inositol 1,4,5-trisphosphate (IP3)-mediated Ca2+ release evoked by metabotropic agonists and backpropagating action potentials in hippocampal CA1 pyramidal neurons. J Neurosci 20:8365-76 [PubMed]

Narayanan R, Dougherty KJ, Johnston D (2010) Calcium store depletion induces persistent perisomatic increases in the functional density of h channels in hippocampal pyramidal neurons. Neuron 68:921-35 [Journal] [PubMed]

Narayanan R, Johnston D (2007) Long-term potentiation in rat hippocampal neurons is accompanied by spatially widespread changes in intrinsic oscillatory dynamics and excitability. Neuron 56:1061-75 [Journal] [PubMed]

   Resonance properties through Chirp stimulus responses (Narayanan Johnston 2007, 2008) [Model]
   Chirp stimulus responses in a morphologically realistic model (Narayanan and Johnston, 2007) [Model]

Narayanan R, Johnston D (2010) The h current is a candidate mechanism for regulating the sliding modification threshold in a BCM-like synaptic learning rule. J Neurophysiol 104:1020-33 [Journal] [PubMed]

   BCM-like synaptic plasticity with conductance-based models (Narayanan Johnston, 2010) [Model]

Neves SR, Iyengar R (2009) Models of spatially restricted biochemical reaction systems. J Biol Chem 284:5445-9 [Journal] [PubMed]

Nishiyama M, Hong K, Mikoshiba K, Poo MM, Kato K (2000) Calcium stores regulate the polarity and input specificity of synaptic modification. Nature 408:584-8 [Journal] [PubMed]

Park CY, Shcheglovitov A, Dolmetsch R (2010) The CRAC channel activator STIM1 binds and inhibits L-type voltage-gated calcium channels. Science 330:101-5 [Journal] [PubMed]

Park MK, Choi YM, Kang YK, Petersen OH (2008) The endoplasmic reticulum as an integrator of multiple dendritic events. Neuroscientist 14:68-77 [Journal] [PubMed]

Pin JP, Duvoisin R (1995) The metabotropic glutamate receptors: structure and functions. Neuropharmacology 34:1-26 [PubMed]

Poirazi P, Brannon T, Mel BW (2003) Pyramidal neuron as two-layer neural network. Neuron 37:989-99 [PubMed]

   CA1 pyramidal neuron: as a 2-layer NN and subthreshold synaptic summation (Poirazi et al 2003) [Model]

Prakriya M, Feske S, Gwack Y, Srikanth S, Rao A, Hogan PG (2006) Orai1 is an essential pore subunit of the CRAC channel. Nature 443:230-3 [Journal] [PubMed]

Pyapali GK, Sik A, Penttonen M, Buzsaki G, Turner DA (1998) Dendritic properties of hippocampal CA1 pyramidal neurons in the rat: intracellular staining in vivo and in vitro. J Comp Neurol 391:335-52 [PubMed]

Rizzuto R, Pozzan T (2006) Microdomains of intracellular Ca2+: molecular determinants and functional consequences. Physiol Rev 86:369-408 [Journal] [PubMed]

Rose CR, Konnerth A (2001) Stores not just for storage. intracellular calcium release and synaptic plasticity. Neuron 31:519-22 [PubMed]

Ross WN (2012) Understanding calcium waves and sparks in central neurons. Nat Rev Neurosci 13:157-68 [Journal] [PubMed]

Sabatini BL, Oertner TG, Svoboda K (2002) The life cycle of Ca(2+) ions in dendritic spines. Neuron 33:439-52 [PubMed]

Shah MM, Hammond RS, Hoffman DA (2010) Dendritic ion channel trafficking and plasticity. Trends Neurosci 33:307-16 [Journal] [PubMed]

Shibata R, Nakahira K, Shibasaki K, Wakazono Y, Imoto K, Ikenaka K (2000) A-type K+ current mediated by the Kv4 channel regulates the generation of action potential in developing cerebellar granule cells. J Neurosci 20:4145-55 [PubMed]

Shouval HZ, Bear MF, Cooper LN (2002) A unified model of NMDA receptor-dependent bidirectional synaptic plasticity. Proc Natl Acad Sci U S A 99:10831-6 [Journal] [PubMed]

Sneyd J, Keizer J, Sanderson MJ (1995) Mechanisms of calcium oscillations and waves: a quantitative analysis. FASEB J 9:1463-72 [PubMed]

Sourdet V, Russier M, Daoudal G, Ankri N, Debanne D (2003) Long-term enhancement of neuronal excitability and temporal fidelity mediated by metabotropic glutamate receptor subtype 5. J Neurosci 23:10238-48 [PubMed]

Stutzmann GE, Mattson MP (2011) Endoplasmic reticulum Ca(2+) handling in excitable cells in health and disease. Pharmacol Rev 63:700-27 [Journal] [PubMed]

Verkhratsky A (2005) Physiology and pathophysiology of the calcium store in the endoplasmic reticulum of neurons. Physiol Rev 85:201-79 [Journal] [PubMed]

Vig M, Peinelt C, Beck A, Koomoa DL, Rabah D, Koblan-Huberson M, Kraft S, Turner H, Fleig A, Penner R, Kinet JP (2006) CRACM1 is a plasma membrane protein essential for store-operated Ca2+ entry. Science 312:1220-3 [Journal] [PubMed]

Wang Y, Deng X, Mancarella S, Hendron E, Eguchi S, Soboloff J, Tang XD, Gill DL (2010) The calcium store sensor, STIM1, reciprocally controls Orai and CaV1.2 channels. Science 330:105-9 [Journal] [PubMed]

Watanabe S, Hoffman DA, Migliore M, Johnston D (2002) Dendritic K+ channels contribute to spike-timing dependent long-term potentiation in hippocampal pyramidal neurons. Proc Natl Acad Sci U S A 99:8366-71 [Journal] [PubMed]

   CA1 pyramidal neuron: conditional boosting of dendritic APs (Watanabe et al 2002) [Model]

Weaver AK, Olsen ML, McFerrin MB, Sontheimer H (2007) BK channels are linked to inositol 1,4,5-triphosphate receptors via lipid rafts: a novel mechanism for coupling [Ca(2+)](i) to ion channel activation. J Biol Chem 282:31558-68

Zhao C, Wang L, Netoff T, Yuan LL (2011) Dendritic mechanisms controlling the threshold and timing requirement of synaptic plasticity. Hippocampus 21:288-97 [Journal] [PubMed]

Basak R, Narayanan R (2018) Active dendrites regulate the spatiotemporal spread of signaling microdomains. PLoS Comput Biol 14:e1006485 [Journal] [PubMed]

   Active dendrites shape signaling microdomains in hippocampal neurons (Basak & Narayanan 2018) [Model]

Mukunda CL, Narayanan R (2017) Degeneracy in the regulation of short-term plasticity and synaptic filtering by presynaptic mechanisms. J Physiol 595:2611-2637 [Journal] [PubMed]

   Conductance based model for short term plasticity at CA3-CA1 synapses (Mukunda & Narayanan 2017) [Model]

Neymotin SA, Dura-Bernal S, Lakatos P, Sanger TD, Lytton WW (2016) Multitarget Multiscale Simulation for Pharmacological Treatment of Dystonia in Motor Cortex. Front Pharmacol 7:157 [Journal] [PubMed]

   Multitarget pharmacology for Dystonia in M1 (Neymotin et al 2016) [Model]

Neymotin SA, McDougal RA, Bulanova AS, Zeki M, Lakatos P, Terman D, Hines ML, Lytton WW (2016) Calcium regulation of HCN channels supports persistent activity in a multiscale model of neocortex. Neuroscience 316:344-66 [Journal] [PubMed]

   Ca+/HCN channel-dependent persistent activity in multiscale model of neocortex (Neymotin et al 2016) [Model]

(102 refs)