Citation Relationships



Hjorth JJ, van Pelt J, Mansvelder HD, van Ooyen A (2014) Competitive Dynamics during Resource-Driven Neurite Outgrowth. PLoS One 9:e86741[PubMed]

   Resource competition in growing neurites (Hjorth et al 2014)

References and models cited by this paper

References and models that cite this paper

Azodo IA, Ehrenpreis ED (2002) Alvimopan (Adolor-GlaxoSmithKline). Curr Opin Investig Drugs 3:1496-501 [PubMed]

Baas PW, Ahmad FJ (1993) The transport properties of axonal microtubules establish their polarity orientation. J Cell Biol 120:1427-37 [PubMed]

Campenot RB, Eng H (2005) Protein synthesis in axons and its possible functions. J Neurocytol 29:793-8

Chang S, Svitkina TM, Borisy GG, Popov SV (1999) Speckle microscopic evaluation of microtubule transport in growing nerve processes. Nat Cell Biol 1:399-403 [PubMed]

Costa Lda F, Manoel ET, Faucereau F, Chelly J, van Pelt J, Ramakers G (2002) A shape analysis framework for neuromorphometry. Network 13:283-310 [PubMed]

Dent EW, Barnes AM, Tang F, Kalil K (2004) Netrin-1 and semaphorin 3A promote or inhibit cortical axon branching, respectively, by reorganization of the cytoskeleton. J Neurosci 24:3002-12 [PubMed]

Dent EW, Gertler FB (2003) Cytoskeletal dynamics and transport in growth cone motility and axon guidance. Neuron 40:209-27 [PubMed]

Flynn KC, Hellal F, Neukirchen D, Jacob S, Tahirovic S, Dupraz S, Stern S, Garvalov BK, Gurni (2012) ADF-cofilin-mediated actin retrograde flow directs neurite formation in the developing brain. Neuron 76:1091-107 [PubMed]

Forgue ST, Dahl JL (1978) The turnover rate of tubulin in rat brain. J Neurochem 31:1289-97

Galbraith JA, Reese TS, Schlief ML, Gallant PE (1999) Slow transport of unpolymerized tubulin and polymerized neurofilament in the squid giant axon. Proc Natl Acad Sci U S A 96:11589-94 [PubMed]

Gard DL, Kirschner MW (1987) Microtubule assembly in cytoplasmic extracts of Xenopus oocytes and eggs. J Cell Biol 105:2191-201 [PubMed]

Graham B, Van_Ooyen A (2001) Compartmental models of growing neurites Neurocomputing 38:31-36

Graham BP, van Ooyen A (2004) Transport limited effects in a model of dendritic branching. J Theor Biol 230:421-32 [PubMed]

   Compartmental models of growing neurites (Graham and van Ooyen 2004) [Model]

Halloran MC, Kalil K (1994) Dynamic behaviors of growth cones extending in the corpus callosum of living cortical brain slices observed with video microscopy. J Neurosci 14:2161-77 [PubMed]

Hely TA, Graham B, Ooyen AV (2001) A computational model of dendrite elongation and branching based on MAP2 phosphorylation. J Theor Biol 210:375-84 [PubMed]

Hille B (1984) Ionic Channels of Excitable Membranes.

Hutchins BI, Kalil K (2008) Differential outgrowth of axons and their branches is regulated by localized calcium transients. J Neurosci 28:143-53 [PubMed]

Janulevicius A, van Pelt J, van Ooyen A (2006) Compartment volume influences microtubule dynamic instability: a model study. Biophys J 90:788-98 [PubMed]

Kapitein LC, Schlager MA, Kuijpers M, Wulf PS, van Spronsen M, MacKintosh FC, Hoogenraad CC (2010) Mixed microtubules steer dynein-driven cargo transport into dendrites. Curr Biol 20:290-9 [PubMed]

Keith CH (1990) Neurite elongation is blocked if microtubule polymerization is inhibited in PC12 cells. Cell Motil Cytoskeleton 17:95-105 [PubMed]

Koene RA, Tijms B, van Hees P, Postma F, de Ridder A, Ramakers GJ, van Pelt J, van Ooyen A (2009) NETMORPH: a framework for the stochastic generation of large scale neuronal networks with realistic neuron morphologies. Neuroinformatics 7:195-210 [Journal] [PubMed]

   NETMORPH: creates NNs with realistic neuron morphologies (Koene et al. 2009, van Ooyen et al. 2014) [Model]

Krouglova T, Vercammen J, Engelborghs Y (2004) Correct diffusion coefficients of proteins in fluorescence correlation spectroscopy. Application to tubulin oligomers induced by Mg2+ and Paclitaxel. Biophys J 87:2635-46

Laferrière NB, MacRae TH, Brown DL (1997) Tubulin synthesis and assembly in differentiating neurons. Biochem Cell Biol 75:103-17 [PubMed]

Lu W, Fox P, Lakonishok M, Davidson MW, Gelfand VI (2013) Initial neurite outgrowth in Drosophila neurons is driven by kinesin-powered microtubule sliding. Curr Biol 23:1018-23 [PubMed]

Luo L, O'Leary DD (2005) Axon retraction and degeneration in development and disease. Annu Rev Neurosci 28:127-56 [PubMed]

Meyer MP, Smith SJ (2006) Evidence from in vivo imaging that synaptogenesis guides the growth and branching of axonal arbors by two distinct mechanisms. J Neurosci 26:3604-14 [PubMed]

Miller KE, Joshi HC (1996) Tubulin transport in neurons. J Cell Biol 133:1355-66 [PubMed]

Miller KE, Samuels DC (1997) The axon as a metabolic compartment: protein degradation, transport, and maximum length of an axon. J Theor Biol 186:373-9 [PubMed]

Morris RL, Hollenbeck PJ (1995) Axonal transport of mitochondria along microtubules and F-actin in living vertebrate neurons. J Cell Biol 131:1315-26 [PubMed]

Morrison EE, Moncur PM, Askham JM (2002) EB1 identifies sites of microtubule polymerisation during neurite development. Brain Res Mol Brain Res 98:145-52 [PubMed]

Mudrakola HV, Zhang K, Cui B (2009) Optically resolving individual microtubules in live axons. Structure 17:1433-41 [PubMed]

O'Toole M, Lamoureux P, Miller KE (2008) A physical model of axonal elongation: force, viscosity, and adhesions govern the mode of outgrowth. Biophys J 94:2610-20 [PubMed]

Odde DJ (1997) Estimation of the diffusion-limited rate of microtubule assembly. Biophys J 73:88-96 [PubMed]

Okabe S, Hirokawa N (1990) Turnover of fluorescently labelled tubulin and actin in the axon. Nature 343:479-82 [PubMed]

Reinsch SS, Mitchison TJ, Kirschner M (1991) Microtubule polymer assembly and transport during axonal elongation. J Cell Biol 115:365-79 [PubMed]

Sanford SD, Gatlin JC, Hokfelt T, Pfenninger KH (2008) Growth cone responses to growth and chemotropic factors. Eur J Neurosci 28:268-78 [PubMed]

Schaefer AW, Schoonderwoert VT, Ji L, Mederios N, Danuser G, Forscher P (2008) Coordination of actin filament and microtubule dynamics during neurite outgrowth. Dev Cell 15:146-62 [PubMed]

Singh KK, Miller FD (2005) Activity regulates positive and negative neurotrophin-derived signals to determine axon competition. Neuron 45:837-45 [PubMed]

Sugimura K, Shimono K, Uemura T, Mochizuki A (2007) Self-organizing mechanism for development of space-filling neuronal dendrites. PLoS Comput Biol 3:e212-310

Toriyama M, Sakumura Y, Shimada T, Ishii S, Inagaki N (2010) A diffusion-based neurite length-sensing mechanism involved in neuronal symmetry breaking. Mol Syst Biol 6:394-9 [PubMed]

Tsaneva-Atanasova K, Burgo A, Galli T, Holcman D (2009) Quantifying neurite growth mediated by interactions among secretory vesicles, microtubules, and actin networks. Biophys J 96:840-57 [PubMed]

van Ooyen A (2011) Using theoretical models to analyse neural development. Nat Rev Neurosci 12:311-26 [PubMed]

van Pelt J, Dityatev AE, Uylings HB (1997) Natural variability in the number of dendritic segments: model-based inferences about branching during neurite outgrowth. J Comp Neurol 387:325-40 [PubMed]

van Pelt J, Uylings HB (2002) Branching rates and growth functions in the outgrowth of dendritic branching patterns. Network 13:261-81 [PubMed]

Van_ooyen A, Graham B, Ramakers G (2001) Competition for tubulin between growing neurites during development Neurocomputing 38:73-78

Walker RA, O'Brien ET, Pryer NK, Soboeiro MF, Voter WA, Erickson HP, Salmon ED (1988) Dynamic instability of individual microtubules analyzed by video light microscopy: rate constants and transition frequencies. J Cell Biol 107:1437-48 [PubMed]

Zakharenko S, Popov S (1998) Dynamics of axonal microtubules regulate the topology of new membrane insertion into the growing neurites. J Cell Biol 143:1077-86 [PubMed]

(47 refs)