Citation Relationships



Hay E, Segev I (2015) Dendritic excitability and gain control in recurrent cortical microcircuits Cerebral Cortex 25(10):3561-3571 [PubMed]

   Microcircuits of L5 thick tufted pyramidal cells (Hay & Segev 2015)

   Layer V pyramidal cell model with reduced morphology (Mäki-Marttunen et al 2017)

References and models cited by this paper

References and models that cite this paper

Anderson CT, Sheets PL, Kiritani T, Shepherd GM (2010) Sublayer-specific microcircuits of corticospinal and corticostriatal neurons in motor cortex. Nat Neurosci 13:739-44 [PubMed]

Ben-Yishai R, Bar-Or RL, Sompolinsky H (1995) Theory of orientation tuning in visual cortex. Proc Natl Acad Sci U S A 92:3844-8 [PubMed]

Binzegger T, Douglas RJ, Martin KA (2004) A quantitative map of the circuit of cat primary visual cortex. J Neurosci 24:8441-53 [PubMed]

Bruno RM (2011) Synchrony in sensation. Curr Opin Neurobiol 21:701-8 [PubMed]

Buesing L, Bill J, Nessler B, Maass W (2011) Neural dynamics as sampling: a model for stochastic computation in recurrent networks of spiking neurons. PLoS Comput Biol 7:e1002211 [PubMed]

Buonomano DV, Maass W (2009) State-dependent computations: spatiotemporal processing in cortical networks. Nat Rev Neurosci 10:113-25 [PubMed]

Carnevale NT, Hines ML (2006) The NEURON Book [Journal]

Chalifoux JR, Carter AG (2011) GABAB receptor modulation of voltage-sensitive calcium channels in spines and dendrites. J Neurosci 31:4221-32 [PubMed]

Chance FS, Nelson SB, Abbott LF (1999) Complex cells as cortically amplified simple cells. Nat Neurosci 2:277-82 [PubMed]

Constantinople CM, Bruno RM (2011) Effects and mechanisms of wakefulness on local cortical networks. Neuron 69:1061-8 [PubMed]

Constantinople CM, Bruno RM (2013) Deep cortical layers are activated directly by thalamus. Science 340:1591-4 [PubMed]

de Kock CP, Bruno RM, Spors H, Sakmann B (2007) Layer- and cell-type-specific suprathreshold stimulus representation in rat primary somatosensory cortex. J Physiol 581:139-54 [PubMed]

Destexhe A, Mainen ZF, Sejnowski TJ (1994) Synthesis of models for excitable membranes, synaptic transmission and neuromodulation using a common kinetic formalism. J Comput Neurosci 1:195-230 [Journal] [PubMed]

   Application of a common kinetic formalism for synaptic models (Destexhe et al 1994) [Model]
   Kinetic synaptic models applicable to building networks (Destexhe et al 1998) [Model]

Douglas RJ, Koch C, Mahowald M, Martin KA, Suarez HH (1995) Recurrent excitation in neocortical circuits. Science 269:981-5 [PubMed]

Douglas RJ, Martin KA (2004) Neuronal circuits of the neocortex. Annu Rev Neurosci 27:419-51 [PubMed]

Douglas RJ, Martin KA (2007) Mapping the matrix: the ways of neocortex. Neuron 56:226-38 [PubMed]

Druckmann S, Banitt Y, Gidon A, Schurmann F, Markram H, Segev I (2007) A novel multiple objective optimization framework for constraining conductance-based neuron models by experimental data. Front Neurosci 1:7-18 [PubMed]

Felleman DJ, Van Essen DC (2004) Distributed hierarchical processing in the primate cerebral cortex. Cereb Cortex 1:1-47 [PubMed]

Frick A, Feldmeyer D, Sakmann B (2007) Postnatal development of synaptic transmission in local networks of L5A pyramidal neurons in rat somatosensory cortex. J Physiol 585:103-16 [PubMed]

Fuhrmann G, Segev I, Markram H, Tsodyks M (2002) Coding of temporal information by activity-dependent synapses. J Neurophysiol 87:140-8 [Journal] [PubMed]

Gentet LJ, Avermann M, Matyas F, Staiger JF, Petersen CC (2010) Membrane potential dynamics of GABAergic neurons in the barrel cortex of behaving mice. Neuron 65:422-35 [PubMed]

Gidon A, Segev I (2012) Principles governing the operation of synaptic inhibition in dendrites Neuron 75:330-41 [Journal] [PubMed]

   Principles governing the operation of synaptic inhibition in dendrites (Gidon & Segev 2012) [Model]

Gilbert CD, Wiesel TN (1979) Morphology and intracortical projections of functionally characterised neurones in the cat visual cortex. Nature 280:120-5 [PubMed]

Gupta A, Wang Y, Markram H (2000) Organizing principles for a diversity of GABAergic interneurons and synapses in the neocortex. Science 287:273-8 [PubMed]

Haider B, Hausser M, Carandini M (2013) Inhibition dominates sensory responses in the awake cortex. Nature 493:97-100 [PubMed]

Hay E, Hill S, Schurmann F, Markram H, Segev I (2011) Models of neocortical layer 5b pyramidal cells capturing a wide range of dendritic and perisomatic active properties. PLoS Comput Biol 7:e1002107 [Journal] [PubMed]

   Cortical Layer 5b pyr. cell with [Na+]i mechanisms, from Hay et al 2011 (Zylbertal et al 2017) [Model]
   L5b PC model constrained for BAC firing and perisomatic current step firing (Hay et al., 2011) [Model]
   Layer V pyramidal cell model with reduced morphology (Mäki-Marttunen et al 2017) [Model]

Heimel JA, Van Hooser SD, Nelson SB (2005) Laminar organization of response properties in primary visual cortex of the gray squirrel (Sciurus carolinensis). J Neurophysiol 94:3538-54 [PubMed]

Heinzle J, Hepp K, Martin KA (2007) A microcircuit model of the frontal eye fields. J Neurosci 27:9341-53 [Journal] [PubMed]

   A microcircuit model of the frontal eye fields (Heinzle et al. 2007) [Model]

Heinzle J, Hepp K, Martin KA (2010) A biologically realistic cortical model of eye movement control in reading. Psychol Rev 117:808-30 [PubMed]

Helmchen F, Svoboda K, Denk W, Tank DW (1999) In vivo dendritic calcium dynamics in deep-layer cortical pyramidal neurons. Nat Neurosci 2:989-96 [PubMed]

Hestrin S (1992) Activation and desensitization of glutamate-activated channels mediating fast excitatory synaptic currents in the visual cortex. Neuron 9:991-9 [PubMed]

Hines ML, Morse T, Migliore M, Carnevale NT, Shepherd GM (2004) ModelDB: A Database to Support Computational Neuroscience. J Comput Neurosci 17:7-11 [Journal] [PubMed]

Kampa BM, Letzkus JJ, Stuart GJ (2006) Cortical feed-forward networks for binding different streams of sensory information. Nat Neurosci 9:1472-3 [PubMed]

Ko H, Hofer SB, Pichler B, Buchanan KA, Sjöström PJ, Mrsic-Flogel TD (2011) Functional specificity of local synaptic connections in neocortical networks. Nature 473:87-91 [PubMed]

Larkum M (2013) A cellular mechanism for cortical associations: an organizing principle for the cerebral cortex. Trends Neurosci 36:141-51 [PubMed]

Larkum ME, Nevian T, Sandler M, Polsky A, Schiller J (2009) Synaptic integration in tuft dendrites of layer 5 pyramidal neurons: a new unifying principle. Science 325:756-60 [Journal] [PubMed]

   Synaptic integration in tuft dendrites of layer 5 pyramidal neurons (Larkum et al. 2009) [Model]

Larkum ME, Senn W, Luscher HR (2004) Top-down dendritic input increases the gain of layer 5 pyramidal neurons. Cereb Cortex 14:1059-70 [PubMed]

Larkum ME, Zhu JJ (2002) Signaling of layer 1 and whisker-evoked Ca2+ and Na+ action potentials in distal and terminal dendrites of rat neocortical pyramidal neurons in vitro and in vivo. J Neurosci 22:6991-7005 [PubMed]

Larkum ME, Zhu JJ, Sakmann B (1999) A new cellular mechanism for coupling inputs arriving at different cortical layers. Nature 398:338-41 [PubMed]

Lavzin M, Rapoport S, Polsky A, Garion L, Schiller J (2012) Nonlinear dendritic processing determines angular tuning of barrel cortex neurons in vivo. Nature 490:397-401 [Journal] [PubMed]

   Nonlinear dendritic processing in barrel cortex spiny stellate neurons (Lavzin et al. 2012) [Model]

Li YT, Ibrahim LA, Liu BH, Zhang LI, Tao HW (2013) Linear transformation of thalamocortical input by intracortical excitation. Nat Neurosci 16:1324-30 [PubMed]

Lien AD, Scanziani M (2013) Tuned thalamic excitation is amplified by visual cortical circuits. Nat Neurosci 16:1315-23 [PubMed]

Litvak S, Ullman S (2009) Cortical circuitry implementing graphical models. Neural Comput 21:3010-56 [PubMed]

Liu BH, Wu GK, Arbuckle R, Tao HW, Zhang LI (2007) Defining cortical frequency tuning with recurrent excitatory circuitry. Nat Neurosci 10:1594-600 [PubMed]

Losonczy A, Magee JC (2006) Integrative properties of radial oblique dendrites in hippocampal CA1 pyramidal neurons. Neuron 50:291-307 [PubMed]

Markram H, Lubke J, Frotscher M, Roth A, Sakmann B (1997) Physiology and anatomy of synaptic connections between thick tufted pyramidal neurones in the developing rat neocortex. J Physiol 500 ( Pt 2):409-40 [PubMed]

Meyer HS, Wimmer VC, Hemberger M, Bruno RM, de Kock CP, Frick A, Sakmann B, Helmstaedter M (2010) Cell type-specific thalamic innervation in a column of rat vibrissal cortex. Cereb Cortex 20:2287-303 [PubMed]

Murayama M, Perez-Garci E, Nevian T, Bock T, Senn W, Larkum ME (2009) Dendritic encoding of sensory stimuli controlled by deep cortical interneurons. Nature 457:1137-41 [PubMed]

Olsen SR, Bortone DS, Adesnik H, Scanziani M (2012) Gain control by layer six in cortical circuits of vision. Nature 483:47-52 [PubMed]

Palmer LM, Schulz JM, Murphy SC, Ledergerber D, Murayama M, Larkum ME (2012) The cellular basis of GABA(B)-mediated interhemispheric inhibition. Science 335:989-93 [PubMed]

Palmer LM, Shai AS, Reeve JE, Anderson HL, Paulsen O, Larkum ME (2014) NMDA spikes enhance action potential generation during sensory input. Nat Neurosci [Journal] [PubMed]

Papoutsi A, Sidiropoulou K, Cutsuridis V, Poirazi P (2013) Induction and modulation of persistent activity in a layer V PFC microcircuit model. Front Neural Circuits 7:161 [Journal] [PubMed]

   L5 PFC microcircuit used to study persistent activity (Papoutsi et al. 2014, 2013) [Model]

Perin R, Berger TK, Markram H (2011) A synaptic organizing principle for cortical neuronal groups. Proc Natl Acad Sci U S A 108:5419-24 [PubMed]

Pfeffer CK, Xue M, He M, Huang ZJ, Scanziani M (2013) Inhibition of inhibition in visual cortex: the logic of connections between molecularly distinct interneurons. Nat Neurosci 16:1068-76 [PubMed]

Polack PO, Friedman J, Golshani P (2013) Cellular mechanisms of brain state-dependent gain modulation in visual cortex. Nat Neurosci 16:1331-9 [PubMed]

Polsky A, Mel B, Schiller J (2009) Encoding and decoding bursts by NMDA spikes in basal dendrites of layer 5 pyramidal neurons. J Neurosci 29:11891-903 [Journal] [PubMed]

   NMDA spikes in basal dendrites of L5 pyramidal neurons (Polsky et al. 2009) [Model]

Polsky A, Mel BW, Schiller J (2004) Computational subunits in thin dendrites of pyramidal cells. Nat Neurosci 7:621-7 [Journal] [PubMed]

   CA1 pyramidal neuron: as a 2-layer NN and subthreshold synaptic summation (Poirazi et al 2003) [Model]

Ramaswamy S, Hill SL, King JG, Schurmann F, Wang Y, Markram H (2012) Intrinsic morphological diversity of thick-tufted layer 5 pyramidal neurons ensures robust and invariant properties of in silico synaptic connections. J Physiol 590:737-52 [PubMed]

Reimann MW, Anastassiou CA, Perin R, Hill SL, Markram H, Koch C (2013) A biophysically detailed model of neocortical local field potentials predicts the critical role of active membrane currents. Neuron 79:375-90 [PubMed]

Reyes A, Sakmann B (1999) Developmental switch in the short-term modification of unitary EPSPs evoked in layer 2-3 and layer 5 pyramidal neurons of rat neocortex. J Neurosci 19:3827-35 [PubMed]

Rhodes P (2006) The properties and implications of NMDA spikes in neocortical pyramidal cells. J Neurosci 26:6704-15 [PubMed]

Ringach DL, Shapley RM, Hawken MJ (2002) Orientation selectivity in macaque V1: diversity and laminar dependence. J Neurosci 22:5639-51 [PubMed]

Salin PA, Prince DA (1996) Electrophysiological mapping of GABAA receptor-mediated inhibition in adult rat somatosensory cortex. J Neurophysiol 75:1589-600 [PubMed]

Sarid L, Bruno R, Sakmann B, Segev I, Feldmeyer D (2007) Modeling a layer 4-to-layer 2-3 module of a single column in rat neocortex: interweaving in vitro and in vivo experimental observations. Proc Natl Acad Sci U S A 104:16353-8 [PubMed]

Schiller J, Major G, Koester HJ, Schiller Y (2000) NMDA spikes in basal dendrites of cortical pyramidal neurons. Nature 404:285-9 [PubMed]

Schiller J, Schiller Y (2001) NMDA receptor-mediated dendritic spikes and coincident signal amplification. Curr Opin Neurobiol 11:343-8 [PubMed]

Silberberg G, Markram H (2007) Disynaptic inhibition between neocortical pyramidal cells mediated by Martinotti cells. Neuron 53:735-46 [PubMed]

Smith SL, Smith IT, Branco T, Hausser M (2013) Dendritic spikes enhance stimulus selectivity in cortical neurons in vivo. Nature 503:115-20 [Journal] [PubMed]

   Dendritic spikes enhance stimulus selectivity in cortical neurons in vivo (Smith et al 2013) [Model]

Song S, Sjostrom PJ, Reigl M, Nelson S, Chklovskii DB (2005) Highly nonrandom features of synaptic connectivity in local cortical circuits. PLoS Biol 3:e68-88 [PubMed]

Stuart GJ, Hausser M (2001) Dendritic coincidence detection of EPSPs and action potentials. Nat Neurosci 4:63-71 [PubMed]

Suarez H, Koch C, Douglas R (1995) Modeling direction selectivity of simple cells in striate visual cortex within the framework of the canonical microcircuit. J Neurosci 15:6700-19 [PubMed]

Takahashi H, Magee JC (2009) Pathway interactions and synaptic plasticity in the dendritic tuft regions of CA1 pyramidal neurons. Neuron 62:102-11 [PubMed]

Thomson AM, Lamy C (2007) Functional maps of neocortical local circuitry. Front Neurosci 1:19-42 [PubMed]

Traub RD, Contreras D, Cunningham MO, Murray H, Lebeau FE, Roopun A, Bibbig A, et al (2005) A single-column thalamocortical network model exhibiting gamma oscillations, sleep spindles and epileptogenic bursts J Neurophysiol 93(4):2194-232 [Journal] [PubMed]

   Collection of simulated data from a thalamocortical network model (Glabska, Chintaluri, Wojcik 2017) [Model]
   A single column thalamocortical network model (Traub et al 2005) [Model]

Tsodyks MV, Markram H (1997) The neural code between neocortical pyramidal neurons depends on neurotransmitter release probability. Proc Natl Acad Sci U S A 94:719-23 [PubMed]

Vaidya SP, Johnston D (2013) Temporal synchrony and gamma-to-theta power conversion in the dendrites of CA1 pyramidal neurons. Nat Neurosci 16:1812-20 [PubMed]

Van Hooser SD (2007) Similarity and diversity in visual cortex: is there a unifying theory of cortical computation? Neuroscientist 13:639-56 [PubMed]

Williams SR, Atkinson SE (2007) Pathway-specific use-dependent dynamics of excitatory synaptic transmission in rat intracortical circuits. J Physiol 585:759-77 [PubMed]

Xu NL, Harnett MT, Williams SR, Huber D, O'Connor DH, Svoboda K, Magee JC (2012) Nonlinear dendritic integration of sensory and motor input during an active sensing task. Nature 492:247-51 [PubMed]

Yoshimura Y, Callaway EM (2005) Fine-scale specificity of cortical networks depends on inhibitory cell type and connectivity. Nat Neurosci 8:1552-9 [PubMed]

Yoshimura Y, Dantzker JL, Callaway EM (2005) Excitatory cortical neurons form fine-scale functional networks. Nature 433:868-73 [PubMed]

Egger R, Schmitt AC, Wallace DJ, Sakmann B, Oberlaender M, Kerr JND (2015) Robustness of sensory-evoked excitation is increased by inhibitory inputs to distal apical tuft dendrites PNAS 112(45):14072-7 [Journal] [PubMed]

   Distal inhibitory control of sensory-evoked excitation (Egger, Schmitt et al. 2015) [Model]

Eyal G, Verhoog MB, Testa-Silva G, Deitcher Y, Benavides-Piccione R, DeFelipe J, de Kock CP, Mansvelder HD, Segev I (2018) Human Cortical Pyramidal Neurons: From Spines to Spikes via Models Front Cell Neurosci 12:181 [Journal] [PubMed]

   Comprehensive models of human cortical pyramidal neurons (Eyal et al 2018) [Model]

Mäki-Marttunen T, Halnes G, Devor A, Metzner C, Dale AM, Andreassen OA, Einevoll GT (2017) A stepwise neuron model fitting procedure designed for recordings with high spatial resolution: Application to layer 5 pyramidal cells. J Neurosci Methods [Journal] [PubMed]

   Layer V pyramidal cell model with reduced morphology (Mäki-Marttunen et al 2017) [Model]

Maki-Marttunen T, Halnes G, Devor A, Witoelar A, Bettella F, Djurovic S, Wang Y, Einevoll GT, Andreassen OA, Dale AM (2016) Functional Effects of Schizophrenia-Linked Genetic Variants on Intrinsic Single-Neuron Excitability: A Modeling Study. Biol Psychiatry Cogn Neurosci Neuroimaging 1:49-59 [Journal] [PubMed]

   Schiz.-linked gene effects on intrinsic single-neuron excitability (Maki-Marttunen et al. 2016) [Model]

Mäki-Marttunen T, Krull F, Bettella F, Hagen E, Næss S, Ness TV, Moberget T, Elvsåshagen T, Metzner C, Devor A, Edwards AG, Fyhn M, Djurovic S, Dale AM, Andreassen OA, Einevoll GT (2018) Alterations in Schizophrenia-Associated Genes Can Lead to Increased Power in Delta Oscillations. Cereb Cortex [Journal] [PubMed]

   SCZ-associated variant effects on L5 pyr cell NN activity and delta osc. (Maki-Marttunen et al 2018) [Model]

Zylbertal A, Yarom Y, Wagner S (2017) The Slow Dynamics of Intracellular Sodium Concentration Increase the Time Window of Neuronal Integration: A Simulation Study Front. Comput. Neurosci. 11(85):1-16 [Journal]

   Cortical Layer 5b pyr. cell with [Na+]i mechanisms, from Hay et al 2011 (Zylbertal et al 2017) [Model]

(87 refs)