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Riera J, Hatanaka R, Ozaki T, Kawashima R (2011) Modeling the spontaneous Ca2+ oscillations in astrocytes: Inconsistencies and usefulness. J Integr Neurosci 10:439-73 [PubMed]

   Spontaneous calcium oscillations in single astrocytes (Riera et al. 2011) (Manninen et al 2017)

References and models cited by this paper

References and models that cite this paper

Aguado F, Espinosa-Parrilla JF, Carmona MA, Soriano E (2002) Neuronal activity regulates correlated network properties of spontaneous calcium transients in astrocytes in situ. J Neurosci 22:9430-44 [PubMed]

Agulhon C, Petravicz J, McMullen AB, Sweger EJ, Minton SK, Taves SR, Casper KB, Fiacco TA, McCarthy KD (2008) What is the role of astrocyte calcium in neurophysiology? Neuron 59:932-46 [Journal] [PubMed]

Alberts B,Bray D,Lewis J,Raff M,Roberts K,Watson J (1989) Molecular Biology of the Cell :495-408

Araque A, Martín ED, Perea G, Arellano JI, Buño W (2002) Synaptically released acetylcholine evokes Ca2+ elevations in astrocytes in hippocampal slices. J Neurosci 22:2443-50 [Journal] [PubMed]

Bennett MR, Farnell L, Gibson WG (2008) Origins of blood volume change due to glutamatergic synaptic activity at astrocytes abutting on arteriolar smooth muscle cells. J Theor Biol 250:172-85 [Journal] [PubMed]

Bezprozvanny I, Watras J, Ehrlich BE (1991) Bell-shaped calcium-response curves of Ins(1,4,5)P3- and calcium-gated channels from endoplasmic reticulum of cerebellum. Nature 351:751-4 [Journal] [PubMed]

Biscay R,Jimenez JC,Riera J,Valdes PA (1996) Local linearization method for numerical solution of stochastic differential equations Ann. Inst. Stat. Math. 48:631-644 [Journal]

Boitier E, Rea R, Duchen MR (1999) Mitochondria exert a negative feedback on the propagation of intracellular Ca2+ waves in rat cortical astrocytes. J Cell Biol 145:795-808 [PubMed]

Bruno L, Solovey G, Ventura AC, Dargan S, Dawson SP (2010) Quantifying calcium fluxes underlying calcium puffs in Xenopus laevis oocytes. Cell Calcium 47:273-86 [Journal] [PubMed]

Bushong EA, Martone ME, Jones YZ, Ellisman MH (2002) Protoplasmic astrocytes in CA1 stratum radiatum occupy separate anatomical domains. J Neurosci 22:183-92 [PubMed]

Cornell-Bell AH, Finkbeiner SM, Cooper MS, Smith SJ (1990) Glutamate induces calcium waves in cultured astrocytes: long-range glial signaling. Science 247:470-3 [PubMed]

Cotrina ML, Lin JH, López-García JC, Naus CC, Nedergaard M (2000) ATP-mediated glia signaling. J Neurosci 20:2835-44 [PubMed]

D'Ascenzo M, Vairano M, Andreassi C, Navarra P, Azzena GB, Grassi C (2004) Electrophysiological and molecular evidence of L-(Cav1), N- (Cav2.2), and R- (Cav2.3) type Ca2+ channels in rat cortical astrocytes. Glia 45:354-63 [Journal] [PubMed]

De Young GW, Keizer J (1992) A single-pool inositol 1,4,5-trisphosphate-receptor-based model for agonist-stimulated oscillations in Ca2+ concentration. Proc Natl Acad Sci U S A 89:9895-9 [PubMed]

Di Garbo A, Barbi M, Chillemi S, Alloisio S, Nobile M (2007) Calcium signalling in astrocytes and modulation of neural activity. Biosystems 89:74-83 [Journal] [PubMed]

Fellin T, Pascual O, Haydon PG (2006) Astrocytes coordinate synaptic networks: balanced excitation and inhibition. Physiology (Bethesda) 21:208-15 [Journal] [PubMed]

Fields RD, Burnstock G (2006) Purinergic signalling in neuron-glia interactions. Nat Rev Neurosci 7:423-36 [Journal] [PubMed]

Fink CC, Slepchenko B, Loew LM (1999) Determination of time-dependent inositol-1,4,5-trisphosphate concentrations during calcium release in a smooth muscle cell. Biophys J 77:617-28 [Journal] [PubMed]

Giaume C, Koulakoff A, Roux L, Holcman D, Rouach N (2010) Astroglial networks: a step further in neuroglial and gliovascular interactions. Nat Rev Neurosci 11:87-99 [Journal] [PubMed]

Goldbeter A, Dupont G, Berridge MJ (1990) Minimal model for signal-induced Ca2+ oscillations and for their frequency encoding through protein phosphorylation. Proc Natl Acad Sci U S A 87:1461-5 [PubMed]

Golovina VA (2005) Visualization of localized store-operated calcium entry in mouse astrocytes. Close proximity to the endoplasmic reticulum. J Physiol 564:737-49 [Journal] [PubMed]

Goto I, Kinoshita S, Natsume K (2004) The model of glutamate induced intracellular Ca2+ oscillation and intercellular Ca2+ wave in brain astrocytes Neurocomputing 58-60:461-467

Goto I,Natsume K (2008) The regulation of cell-response heterogeneities induced by astrocytic intracellular enzyme concentration The Biophysical Society of Japan 41:161-166 [Journal]

Grimaldi M, Maratos M, Verma A (2003) Transient receptor potential channel activation causes a novel form of [Ca 2+]I oscillations and is not involved in capacitative Ca 2+ entry in glial cells. J Neurosci 23:4737-45 [PubMed]

Guthrie PB, Knappenberger J, Segal M, Bennett MV, Charles AC, Kater SB (1999) ATP released from astrocytes mediates glial calcium waves. J Neurosci 19:520-8 [PubMed]

Haeri HH,Hashemianzadeh SM,Monajjemi M (2007) Temperature effects on the stochastic gating of the IP3R calcium release channel: A numerical simulation J. Biol. Syst. 17:817-852

Hirase H, Qian L, Barthó P, Buzsáki G (2004) Calcium dynamics of cortical astrocytic networks in vivo. PLoS Biol 2:E96 [Journal] [PubMed]

Höfer T, Politi A, Heinrich R (2001) Intercellular Ca2+ wave propagation through gap-junctional Ca2+ diffusion: a theoretical study. Biophys J 80:75-87 [Journal] [PubMed]

Höfer T, Venance L, Giaume C (2002) Control and plasticity of intercellular calcium waves in astrocytes: a modeling approach. J Neurosci 22:4850-9 [PubMed]

Holtzclaw LA, Pandhit S, Bare DJ, Mignery GA, Russell JT (2002) Astrocytes in adult rat brain express type 2 inositol 1,4,5-trisphosphate receptors. Glia 39:69-84 [Journal] [PubMed]

Hua X, Malarkey EB, Sunjara V, Rosenwald SE, Li WH, Parpura V (2004) C(a2+)-dependent glutamate release involves two classes of endoplasmic reticulum Ca(2+) stores in astrocytes. J Neurosci Res 76:86-97 [Journal] [PubMed]

Hubley MJ, Locke BR, Moerland TS (1996) The effects of temperature, pH, and magnesium on the diffusion coefficient of ATP in solutions of physiological ionic strength. Biochim Biophys Acta 1291:115-21 [PubMed]

Jimenez JC,Ozaki T (2003) Local linearization filters for non-linear continuous-discrete state space models with multiplicative noise Int. J. Control 76:1159-1170

Kang M, Othmer HG (2009) Spatiotemporal characteristics of calcium dynamics in astrocytes. Chaos 19:037116 [Journal] [PubMed]

Keizer J, De Young GW (1992) Two roles of Ca2+ in agonist stimulated Ca2+ oscillations. Biophys J 61:649-60 [Journal] [PubMed]

Kirchhoff F, Dringen R, Giaume C (2001) Pathways of neuron-astrocyte interactions and their possible role in neuroprotection. Eur Arch Psychiatry Clin Neurosci 251:159-69 [PubMed]

Kirichok Y, Krapivinsky G, Clapham DE (2004) The mitochondrial calcium uniporter is a highly selective ion channel. Nature 427:360-4 [Journal] [PubMed]

Kresse W, Sekler I, Hoffmann A, Peters O, Nolte C, Moran A, Kettenmann H (2005) Zinc ions are endogenous modulators of neurotransmitter-stimulated capacitative Ca2+ entry in both cultured and in situ mouse astrocytes. Eur J Neurosci 21:1626-34 [Journal] [PubMed]

Kuchibhotla KV, Lattarulo CR, Hyman BT, Bacskai BJ (2009) Synchronous hyperactivity and intercellular calcium waves in astrocytes in Alzheimer mice. Science 323:1211-5 [Journal] [PubMed]

Lavrentovich M, Hemkin S (2008) A mathematical model of spontaneous calcium(II) oscillations in astrocytes. J Theor Biol 251:553-60 [Journal] [PubMed]

   Spontaneous calcium oscillations in astrocytes (Lavrentovich and Hemkin 2008) [Model]
   Ca2+ oscillations in single astrocytes (Lavrentovich and Hemkin 2008) (python) (Manninen et al 2017) [Model]

Lerea LS, McCarthy KD (1989) Astroglial cells in vitro are heterogeneous with respect to expression of the alpha 1-adrenergic receptor. Glia 2:135-47 [Journal] [PubMed]

Li N, Sul JY, Haydon PG (2003) A calcium-induced calcium influx factor, nitric oxide, modulates the refilling of calcium stores in astrocytes. J Neurosci 23:10302-10 [PubMed]

Li YX, Rinzel J (1994) Equations for InsP3 receptor-mediated [Ca2+]i oscillations derived from a detailed kinetic model: a Hodgkin-Huxley like formalism. J Theor Biol 166:461-73 [Journal] [PubMed]

Liao XL, Jung P, Shuai JW (2009) Global noise and oscillations in clustered excitable media. Phys Rev E Stat Nonlin Soft Matter Phys 79:041923 [Journal] [PubMed]

Malarkey EB, Ni Y, Parpura V (2008) Ca2+ entry through TRPC1 channels contributes to intracellular Ca2+ dynamics and consequent glutamate release from rat astrocytes. Glia 56:821-35 [Journal] [PubMed]

Meier SD, Kafitz KW, Rose CR (2008) Developmental profile and mechanisms of GABA-induced calcium signaling in hippocampal astrocytes. Glia 56:1127-37 [Journal] [PubMed]

Meyer T, Stryer L (1988) Molecular model for receptor-stimulated calcium spiking. Proc Natl Acad Sci U S A 85:5051-5 [PubMed]

Mikoshiba K, Hattori M (2000) IP3 receptor-operated calcium entry. Sci STKE 2000:pe1 [Journal] [PubMed]

Nakauchi S, Brennan RJ, Boulter J, Sumikawa K (2007) Nicotine gates long-term potentiation in the hippocampal CA1 region via the activation of alpha2* nicotinic ACh receptors. Eur J Neurosci 25:2666-81 [Journal] [PubMed]

Nett WJ, Oloff SH, McCarthy KD (2002) Hippocampal astrocytes in situ exhibit calcium oscillations that occur independent of neuronal activity. J Neurophysiol 87:528-37 [Journal] [PubMed]

Nilsson M, Hansson E, Rönnbäck L (1991) Heterogeneity among astroglial cells with respect to 5HT-evoked cytosolic Ca2+ responses. A microspectrofluorimetric study on single cells in primary culture. Life Sci 49:1339-50 [PubMed]

Parri HR, Gould TM, Crunelli V (2001) Spontaneous astrocytic Ca2+ oscillations in situ drive NMDAR-mediated neuronal excitation. Nat Neurosci 4:803-12 [Journal] [PubMed]

Pawelczyk T, Matecki A (1997) Structural requirements of phospholipase C delta1 for regulation by spermine, sphingosine and sphingomyelin. Eur J Biochem 248:459-65 [PubMed]

Pawelczyk T, Matecki A (1997) Expression, purification and kinetic properties of human recombinant phospholipase C delta 3. Acta Biochim Pol 44:221-9 [PubMed]

Pellerin L, Magistretti PJ (2004) Neuroenergetics: calling upon astrocytes to satisfy hungry neurons. Neuroscientist 10:53-62 [Journal] [PubMed]

Pizzo P, Burgo A, Pozzan T, Fasolato C (2001) Role of capacitative calcium entry on glutamate-induced calcium influx in type-I rat cortical astrocytes. J Neurochem 79:98-109 [PubMed]

Porter JT, McCarthy KD (1996) Hippocampal astrocytes in situ respond to glutamate released from synaptic terminals. J Neurosci 16:5073-81 [PubMed]

Putney JW, Broad LM, Braun FJ, Lievremont JP, Bird GS (2001) Mechanisms of capacitative calcium entry. J Cell Sci 114:2223-9 [PubMed]

Rebecchi MJ, Pentyala SN (2000) Structure, function, and control of phosphoinositide-specific phospholipase C. Physiol Rev 80:1291-335 [Journal] [PubMed]

Reyes RC, Parpura V (2008) Mitochondria modulate Ca2+-dependent glutamate release from rat cortical astrocytes. J Neurosci 28:9682-91 [Journal] [PubMed]

Riera J, Hatanaka R, Uchida T, Ozaki T, Kawashima R (2011) Quantifying the uncertainty of spontaneous Ca2+ oscillations in astrocytes: particulars of Alzheimer's disease. Biophys J 101:554-64 [Journal] [PubMed]

   Spontaneous calcium oscillations in single astrocytes (Riera et al. 2011) (Manninen et al 2017) [Model]

Riera J, Ogawa T, Hatanaka R, Goto T, Sumiyoshi A, Kadji HE, Nakauchi S, Kawashima R (2010) Concurrent observations of astrocytic Ca(2+) activity and multisite extracellular potentials from an intact cerebral cortex. J Biophotonics 3:147-60 [Journal] [PubMed]

Riera JJ, Jimenez JC, Wan X, Kawashima R, Ozaki T (2007) Nonlinear local electrovascular coupling. II: From data to neuronal masses. Hum Brain Mapp 28:335-54 [Journal] [PubMed]

Riera JJ, Sumiyoshi A (2010) Brain oscillations: ideal scenery to understand the neurovascular coupling. Curr Opin Neurol 23:374-81 [Journal] [PubMed]

Riera JJ, Watanabe J, Kazuki I, Naoki M, Aubert E, Ozaki T, Kawashima R (2004) A state-space model of the hemodynamic approach: nonlinear filtering of BOLD signals. Neuroimage 21:547-67 [Journal] [PubMed]

Rojas H, Colina C, Ramos M, Benaim G, Jaffe EH, Caputo C, DiPolo R (2007) Na+ entry via glutamate transporter activates the reverse Na+/Ca2+ exchange and triggers Ca(i)2+-induced Ca2+ release in rat cerebellar Type-1 astrocytes. J Neurochem 100:1188-202 [Journal] [PubMed]

Schipke CG, Heidemann A, Skupin A, Peters O, Falcke M, Kettenmann H (2008) Temperature and nitric oxide control spontaneous calcium transients in astrocytes. Cell Calcium 43:285-95 [Journal] [PubMed]

Sharp AH, Nucifora FC, Blondel O, Sheppard CA, Zhang C, Snyder SH, Russell JT, Ryugo DK, Ross CA (1999) Differential cellular expression of isoforms of inositol 1,4,5-triphosphate receptors in neurons and glia in brain. J Comp Neurol 406:207-20 [PubMed]

Sheng R,Ru¨diger S,Shuai J (2011) Coherent calcium puff signals driven by intracellular noises Physica A 390:1117-1123

Shigetomi E, Kracun S, Sofroniew MV, Khakh BS (2010) A genetically targeted optical sensor to monitor calcium signals in astrocyte processes. Nat Neurosci 13:759-66 [Journal] [PubMed]

Shuai J, Rose HJ, Parker I (2006) The number and spatial distribution of IP3 receptors underlying calcium puffs in Xenopus oocytes. Biophys J 91:4033-44 [Journal] [PubMed]

Shuai JW, Huang YD, Rüdiger S (2010) Puff-wave transition in an inhomogeneous model for calcium signals. Phys Rev E Stat Nonlin Soft Matter Phys 81:041904 [Journal] [PubMed]

Shuai JW, Jung P (2002) Stochastic properties of Ca(2+) release of inositol 1,4,5-trisphosphate receptor clusters. Biophys J 83:87-97 [Journal] [PubMed]

Singaravelu K, Lohr C, Deitmer JW (2006) Regulation of store-operated calcium entry by calcium-independent phospholipase A2 in rat cerebellar astrocytes. J Neurosci 26:9579-92 [Journal] [PubMed]

Skupin A, Kettenmann H, Falcke M (2010) Calcium signals driven by single channel noise. PLoS Comput Biol [Journal] [PubMed]

Skupin A, Kettenmann H, Winkler U, Wartenberg M, Sauer H, Tovey SC, Taylor CW, Falcke M (2008) How does intracellular Ca2+ oscillate: by chance or by the clock? Biophys J 94:2404-11 [Journal] [PubMed]

Smith IF, Parker I (2009) Imaging the quantal substructure of single IP3R channel activity during Ca2+ puffs in intact mammalian cells. Proc Natl Acad Sci U S A 106:6404-9 [Journal] [PubMed]

Smith IF, Wiltgen SM, Shuai J, Parker I (2009) Ca(2+) puffs originate from preestablished stable clusters of inositol trisphosphate receptors. Sci Signal 2:ra77 [Journal] [PubMed]

Sneyd J, Tsaneva-Atanasova K, Reznikov V, Bai Y, Sanderson MJ, Yule DI (2006) A method for determining the dependence of calcium oscillations on inositol trisphosphate oscillations. Proc Natl Acad Sci U S A 103:1675-80 [Journal] [PubMed]

Stamatakis M, Mantzaris NV (2006) Modeling of ATP-mediated signal transduction and wave propagation in astrocytic cellular networks. J Theor Biol 241:649-68 [Journal] [PubMed]

Stout CE, Costantin JL, Naus CC, Charles AC (2002) Intercellular calcium signaling in astrocytes via ATP release through connexin hemichannels. J Biol Chem 277:10482-8 [Journal] [PubMed]

Taufiq-Ur-Rahman , Skupin A, Falcke M, Taylor CW (2009) Clustering of InsP3 receptors by InsP3 retunes their regulation by InsP3 and Ca2+. Nature 458:655-9 [Journal] [PubMed]

Tu H, Wang Z, Bezprozvanny I (2005) Modulation of mammalian inositol 1,4,5-trisphosphate receptor isoforms by calcium: a role of calcium sensor region. Biophys J 88:1056-69 [Journal] [PubMed]

Tu H, Wang Z, Nosyreva E, De Smedt H, Bezprozvanny I (2005) Functional characterization of mammalian inositol 1,4,5-trisphosphate receptor isoforms. Biophys J 88:1046-55 [Journal] [PubMed]

Ullah G, Jung P, Cornell-Bell AH (2006) Anti-phase calcium oscillations in astrocytes via inositol (1, 4, 5)-trisphosphate regeneration. Cell Calcium 39:197-208 [Journal] [PubMed]

Venance L, Stella N, Glowinski J, Giaume C (1997) Mechanism involved in initiation and propagation of receptor-induced intercellular calcium signaling in cultured rat astrocytes. J Neurosci 17:1981-92 [PubMed]

Wang TF, Zhou C, Tang AH, Wang SQ, Chai Z (2006) Cellular mechanism for spontaneous calcium oscillations in astrocytes. Acta Pharmacol Sin 27:861-8 [Journal] [PubMed]

Wang X, Lou N, Xu Q, Tian GF, Peng WG, Han X, Kang J, Takano T, Nedergaard M (2006) Astrocytic Ca2+ signaling evoked by sensory stimulation in vivo. Nat Neurosci 9:816-23 [Journal] [PubMed]

Watras J, Bezprozvanny I, Ehrlich BE (1991) Inositol 1,4,5-trisphosphate-gated channels in cerebellum: presence of multiple conductance states. J Neurosci 11:3239-45 [PubMed]

Weeber EJ, Beffert U, Jones C, Christian JM, Forster E, Sweatt JD, Herz J (2002) Reelin and ApoE receptors cooperate to enhance hippocampal synaptic plasticity and learning. J Biol Chem 277:39944-52 [Journal] [PubMed]

Wei F, Shuai J (2011) Intercellular calcium waves in glial cells with bistable dynamics. Phys Biol 8:026009 [Journal] [PubMed]

Zeng S, Li B, Zeng S, Chen S (2009) Simulation of spontaneous Ca2+ oscillations in astrocytes mediated by voltage-gated calcium channels. Biophys J 97:2429-37 [Journal] [PubMed]

Zur Nieden R, Deitmer JW (2006) The role of metabotropic glutamate receptors for the generation of calcium oscillations in rat hippocampal astrocytes in situ. Cereb Cortex 16:676-87 [Journal] [PubMed]

Manninen T, Havela R, Linne ML (2017) Reproducibility and comparability of computational models for astrocyte calcium excitability Front. Neuroinform. [Journal]

   Ca2+ oscillations in single astrocytes (Lavrentovich and Hemkin 2008) (python) (Manninen et al 2017) [Model]
   Glutamate-evoked Ca2+ oscillations in single astrocytes (Modified from Dupont et al. 2011) [Model]
   Glutamate-evoked Ca2+ oscillations in single astrocytes (De Pitta et al. 2009) (Manninen et al 2017) [Model]
   Reproducibility and comparability of models for astrocyte Ca2+ excitability (Manninen et al 2017) [Model]
   Spontaneous calcium oscillations in single astrocytes (Riera et al. 2011) (Manninen et al 2017) [Model]

Riera J, Hatanaka R, Uchida T, Ozaki T, Kawashima R (2011) Quantifying the uncertainty of spontaneous Ca2+ oscillations in astrocytes: particulars of Alzheimer's disease. Biophys J 101:554-64 [Journal] [PubMed]

   Spontaneous calcium oscillations in single astrocytes (Riera et al. 2011) (Manninen et al 2017) [Model]

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