Citation Relationships



Bhalla US (2017) Synaptic input sequence discrimination on behavioral timescales mediated by reaction-diffusion chemistry in dendrites. Elife [PubMed]

   Discrimination on behavioral time-scales mediated by reaction-diffusion in dendrites (Bhalla 2017)

References and models cited by this paper

References and models that cite this paper

Abeles M (1982) Local Cortical Circuits: An Electrophysiological Study

Ascoli GA, Donohue DE, Halavi M (2007) NeuroMorpho.Org: a central resource for neuronal morphologies. J Neurosci 27:9247-51 [Journal] [PubMed]

Barak O, Tsodyks M (2006) Recognition by variance: learning rules for spatiotemporal patterns. Neural Comput 18:2343-58 [Journal] [PubMed]

Bhalla US (2002) Mechanisms for temporal tuning and filtering by postsynaptic signaling pathways. Biophys J 83:740-52 [Journal] [PubMed]

Bhalla US (2011) Multiscale interactions between chemical and electric signaling in LTP induction, LTP reversal and dendritic excitability. Neural Netw [Journal] [PubMed]

   Multiscale interactions between chemical and electric signaling in LTP (Bhalla 2011) [Model]

Bhalla US, Iyengar R (1999) Emergent properties of networks of biological signaling pathways. Science 283:381-7 [PubMed]

   Emergent properties of networks of biological signaling pathways (Bhalla, Iyengar 1999) [Model]

Bouchard KE, Brainard MS (2016) Auditory-induced neural dynamics in sensory-motor circuitry predict learned temporal and sequential statistics of birdsong. Proc Natl Acad Sci U S A 113:9641-6 [Journal] [PubMed]

Branco T, Clark BA, Häusser M (2010) Dendritic discrimination of temporal input sequences in cortical neurons. Science 329:1671-5 [Journal] [PubMed]

   Dendritic Discrimination of Temporal Input Sequences (Branco et al. 2010) [Model]

Broome BM, Jayaraman V, Laurent G (2006) Encoding and decoding of overlapping odor sequences. Neuron 51:467-82 [Journal] [PubMed]

Carrillo-Reid L, Miller JE, Hamm JP, Jackson J, Yuste R (2015) Endogenous sequential cortical activity evoked by visual stimuli. J Neurosci 35:8813-28 [Journal] [PubMed]

Dougherty KA, Islam T, Johnston D (2012) Intrinsic excitability of CA1 pyramidal neurones from the rat dorsal and ventral hippocampus. J Physiol 590:5707-22 [Journal] [PubMed]

Fitzhugh R (1961) Impulses and Physiological States in Theoretical Models of Nerve Membrane. Biophys J 1:445-66 [PubMed]

Frey U, Morris RG (1997) Synaptic tagging and long-term potentiation. Nature 385:533-6 [Journal] [PubMed]

George D, Hawkins J (2009) Towards a mathematical theory of cortical micro-circuits. PLoS Comput Biol 5:e1000532 [Journal] [PubMed]

Gleeson P, Crook S, Cannon RC, Hines ML, Billings GO, Farinella M, Morse TM, Davison AP, Ray S, Bhalla US, Barnes SR, Dimitrova YD, Silver RA (2010) NeuroML: a language for describing data driven models of neurons and networks with a high degree of biological detail. PLoS Comput Biol 6:e1000815 [Journal] [PubMed]

Goudar V, Buonomano DV (2015) A model of order-selectivity based on dynamic changes in the balance of excitation and inhibition produced by short-term synaptic plasticity. J Neurophysiol 113:509-23 [Journal] [PubMed]

Hagenston AM, Fitzpatrick JS, Yeckel MF (2008) MGluR-mediated calcium waves that invade the soma regulate firing in layer V medial prefrontal cortical pyramidal neurons. Cereb Cortex 18:407-23 [Journal] [PubMed]

Hawkins J, Ahmad S (2016) Why Neurons Have Thousands of Synapses, a Theory of Sequence Memory in Neocortex. Front Neural Circuits 10:23 [Journal] [PubMed]

   Theory of sequence memory in neocortex (Hawkins & Ahmad 2016) [Model]

Hines M (1984) Efficient computation of branched nerve equations. Int J Biomed Comput 15:69-76 [PubMed]

Jadhav SP, Kemere C, German PW, Frank LM (2012) Awake hippocampal sharp-wave ripples support spatial memory. Science 336:1454-8 [Journal] [PubMed]

Jägerbrand AK, Antonson H (2016) Driving behaviour responses to a moose encounter, automatic speed camera, wildlife warning sign and radio message determined in a factorial simulator study. Accid Anal Prev 86:229-38 [Journal] [PubMed]

Kapur A, Yeckel M, Johnston D (2001) Hippocampal mossy fiber activity evokes Ca2+ release in CA3 pyramidal neurons via a metabotropic glutamate receptor pathway. Neuroscience 107:59-69 [PubMed]

Keener J,Sneyd J (1998) Mathematical Physiology

Keifer J, Zheng ZQ, Zhu D (2007) MAPK signaling pathways mediate AMPA receptor trafficking in an in vitro model of classical conditioning. J Neurophysiol 97:2067-74 [Journal] [PubMed]

Kim M, Park AJ, Havekes R, Chay A, Guercio LA, Oliveira RF, Abel T, Blackwell KT (2011) Colocalization of protein kinase A with adenylyl cyclase enhances protein kinase A activity during induction of long-lasting long-term-potentiation. PLoS Comput Biol 7:e1002084 [Journal] [PubMed]

   Hippocampus CA1: Simulations of LTP signaling pathways (Kim M et al. 2011) [Model]

Kumar A, Rotter S, Aertsen A (2008) Conditions for propagating synchronous spiking and asynchronous firing rates in a cortical network model. J Neurosci 28:5268-80 [Journal] [PubMed]

Laje R, Buonomano DV (2013) Robust timing and motor patterns by taming chaos in recurrent neural networks. Nat Neurosci 16:925-33 [Journal] [PubMed]

Lake D, Corrêa SA, Müller J (2016) Negative feedback regulation of the ERK1/2 MAPK pathway. Cell Mol Life Sci 73:4397-4413 [Journal] [PubMed]

Larkum ME, Watanabe S, Nakamura T, Lasser-Ross N, Ross WN (2003) Synaptically activated Ca2+ waves in layer 2/3 and layer 5 rat neocortical pyramidal neurons. J Physiol 549:471-88 [Journal] [PubMed]

Lee DL (2002) Pattern sequence recognition using a time-varying Hopfield network. IEEE Trans Neural Netw 13:330-42 [Journal] [PubMed]

Lee KF, Soares C, Thivierge JP, Béïque JC (2016) Correlated Synaptic Inputs Drive Dendritic Calcium Amplification and Cooperative Plasticity during Clustered Synapse Development. Neuron 89:784-99 [Journal] [PubMed]

Lin YF, Chai Y (2008) Functional modulation of the ATP-sensitive potassium channel by extracellular signal-regulated kinase-mediated phosphorylation. Neuroscience 152:371-80 [Journal] [PubMed]

Lisman JE, Zhabotinsky AM (2001) A model of synaptic memory: a CaMKII/PP1 switch that potentiates transmission by organizing an AMPA receptor anchoring assembly. Neuron 31:191-201 [PubMed]

Loewenstein Y, Sompolinsky H (2003) Temporal integration by calcium dynamics in a model neuron. Nat Neurosci 6:961-7 [Journal] [PubMed]

Lorente_de_no r (1938) Analysis of the activity of the chains of internucial neurons J Neurophysiol 1:207-44

MacDonald CJ, Lepage KQ, Eden UT, Eichenbaum H (2011) Hippocampal "time cells" bridge the gap in memory for discontiguous events. Neuron 71:737-49 [Journal] [PubMed]

Matsumoto M, Nishimura T (1998) Marsenne Twister: A 623-dimensionally equidistributed uniform pseudorandom number generator ACM Trans On Modelling And Computer Simulation 8:3-30

Mehring C, Hehl U, Kubo M, Diesmann M, Aertsen A (2003) Activity dynamics and propagation of synchronous spiking in locally connected random networks. Biol Cybern 88:395-408 [Journal] [PubMed]

Modi MN, Dhawale AK, Bhalla US (2014) CA1 cell activity sequences emerge after reorganization of network correlation structure during associative learning. Elife 3:e01982 [Journal] [PubMed]

Nagumo J, Arimoto S, Yoshizawa S (1962) An Active Pulse Transmission Line Simulating Nerve Axon Proceedings of the IRE 50:2061-2070 [Journal]

Narayanan R, Johnston D (2010) The h current is a candidate mechanism for regulating the sliding modification threshold in a BCM-like synaptic learning rule. J Neurophysiol 104:1020-33 [Journal] [PubMed]

   BCM-like synaptic plasticity with conductance-based models (Narayanan Johnston, 2010) [Model]

Omenn GS (2011) Data management and data integration in the HUPO plasma proteome project. Methods Mol Biol 696:247-57 [Journal] [PubMed]

Plotkin JL, Day M, Surmeier DJ (2011) Synaptically driven state transitions in distal dendrites of striatal spiny neurons. Nat Neurosci 14:881-8 [Journal] [PubMed]

Plotkin JL, Shen W, Rafalovich I, Sebel LE, Day M, Chan CS, Surmeier DJ (2013) Regulation of dendritic calcium release in striatal spiny projection neurons. J Neurophysiol 110:2325-36 [Journal] [PubMed]

Rall W (1964) Theoretical significance of dendritic trees for neuronal input output relations Neural Theory and Modeling, Reiss RF, ed. pp.73 [Journal]

   Effects of synaptic location and timing on synaptic integration (Rall 1964) [Model]

Ray S, Bhalla US (2008) PyMOOSE: Interoperable Scripting in Python for MOOSE. Front Neuroinformatics 2(6):1-16 [Journal] [PubMed]

   Moose/PyMOOSE: interoperable scripting in Python for MOOSE (Ray and Bhalla 2008) [Model]

Resat H, Ewald JA, Dixon DA, Wiley HS (2003) An integrated model of epidermal growth factor receptor trafficking and signal transduction. Biophys J 85:730-43 [PubMed]

Rosenblum K, Futter M, Voss K, Erent M, Skehel PA, French P, Obosi L, Jones MW, Bliss TV (2002) The role of extracellular regulated kinases I/II in late-phase long-term potentiation. J Neurosci 22:5432-41 [Journal] [PubMed]

Ross WN (2012) Understanding calcium waves and sparks in central neurons. Nat Rev Neurosci 13:157-68 [Journal] [PubMed]

Smolen P, Baxter DA, Byrne JH (2006) A model of the roles of essential kinases in the induction and expression of late long-term potentiation. Biophys J 90:2760-75 [Journal] [PubMed]

   Roles of essential kinases in induction of late hippocampal LTP (Smolen et al., 2006) [Model]

Stamboulian S, Choi JS, Ahn HS, Chang YW, Tyrrell L, Black JA, Waxman SG, Dib-Hajj SD (2010) ERK1/2 mitogen-activated protein kinase phosphorylates sodium channel Na(v)1.7 and alters its gating properties. J Neurosci 30:1637-47 [Journal] [PubMed]

Tank DW, Hopfield JJ (1987) Neural computation by concentrating information in time. Proc Natl Acad Sci U S A 84:1896-900 [PubMed]

Traub RD, Wong RK, Miles R, Michelson H (1991) A model of a CA3 hippocampal pyramidal neuron incorporating voltage-clamp data on intrinsic conductances. J Neurophysiol 66:635-50 [Journal] [PubMed]

Tsokas P, Ma T, Iyengar R, Landau EM, Blitzer RD (2007) Mitogen-activated protein kinase upregulates the dendritic translation machinery in long-term potentiation by controlling the mammalian target of rapamycin pathway. J Neurosci 27:5885-94 [Journal] [PubMed]

Tyler WJ, Alonso M, Bramham CR, Pozzo-Miller LD (2002) From acquisition to consolidation: on the role of brain-derived neurotrophic factor signaling in hippocampal-dependent learning. Learn Mem 9:224-37 [Journal] [PubMed]

Wilson MA, McNaughton BL (1994) Reactivation of hippocampal ensemble memories during sleep. Science 265:676-9 [PubMed]

Yuan LL, Adams JP, Swank M, Sweatt JD, Johnston D (2002) Protein kinase modulation of dendritic K+ channels in hippocampus involves a mitogen-activated protein kinase pathway. J Neurosci 22:4860-8 [PubMed]

(57 refs)