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Vanier MC, Bower JM (1999) A comparative survey of automated parameter-search methods for compartmental neural models. J Comput Neurosci 7:149-71[PubMed]

References and models cited by this paper

References and models that cite this paper

Bush K, Knight J, Anderson C (2005) Optimizing conductance parameters of cortical neural models via electrotonic partitions. Neural Netw 18:488-96 [PubMed]

Butson CR, Clark GA (2007) Random noise paradoxically improves light-intensity encoding in Hermissenda photoreceptor network. J Neurophysiol : [PubMed]

Cannon RC, Hasselmo ME, Koene RA (2003) From biophysics to behavior: Catacomb2 and the design of biologically-plausible models for spatial navigation. Neuroinformatics 1:3-42 [Journal] [PubMed]

   Biologically-plausible models for spatial navigation (Cannon et al 2003) [Model]

Coop AD, Reeke GN (2001) The composite neuron: a realistic one-compartment Purkinje cell model suitable for large-scale neuronal network simulations. J Comput Neurosci 10:173-86 [Journal] [PubMed]

Cox SJ, Griffith BE (2001) Recovering Quasi-Active Properties of Dendritic Neurons from Dual Potential Recordings J Comput Neurosci 11:95-110 [Journal]

D'Angelo E, Nieus T, Maffei A, Armano S, Rossi P, Taglietti V, Fontana A, Naldi G (2001) Theta-frequency bursting and resonance in cerebellar granule cells: experimental evidence and modeling of a slow k+-dependent mechanism. J Neurosci 21:759-70 [PubMed]

   Bursting and resonance in cerebellar granule cells (D'Angelo et al. 2001) [Model]

Davison AP, Feng J, Brown D (2000) A reduced compartmental model of the mitral cell for use in network models of the olfactory bulb. Brain Res Bull 51:393-9 [Journal] [PubMed]

   Olfactory Mitral Cell (Davison et al 2000) [Model]

Fransen E (2007) Neural response profile design: Reducing epileptogenic activity by modifying neuron responses to synchronized input using novel potassium channels obtained by parameter search optimization Neurocomputing 70(10-12):1630-1634 [Journal]

Friedrich P, Vella M, Gulyas AI, Freund TF, Kali S (2014) A flexible, interactive software tool for fitting the parameters of neuronal models. Front Neuroinform 8:63 [Journal] [PubMed]

   Software (called Optimizer) for fitting neuronal models (Friedrich et al. 2014) [Model]

Gold C, Henze DA, Koch C (2007) Using Extracellular Action Potential Recordings to Tune Compartmental Models. Journal of Computational Neuroscience 23:39-58 [Journal] [PubMed]

   Extracellular Action Potential Simulations (Gold et al 2007) [Model]

Hay E, Hill S, Schurmann F, Markram H, Segev I (2011) Models of neocortical layer 5b pyramidal cells capturing a wide range of dendritic and perisomatic active properties. PLoS Comput Biol 7:e1002107 [Journal] [PubMed]

   Cortical Layer 5b pyr. cell with [Na+]i mechanisms, from Hay et al 2011 (Zylbertal et al 2017) [Model]
   L5b PC model constrained for BAC firing and perisomatic current step firing (Hay et al., 2011) [Model]
   Layer V pyramidal cell model with reduced morphology (Mäki-Marttunen et al 2017) [Model]

He Y, Keyes DE (2007) Reconstructing parameters of the FitzHugh-Nagumo system from boundary potential measurements. J Comput Neurosci 23:251-64 [Journal] [PubMed]

Hendrickson EB, Edgerton JR, Jaeger D (2011) The capabilities and limitations of conductance-based compartmental neuron models with reduced branched or unbranched morphologies and active dendrites. J. Comp. Neurosci. 30(2):301-321 [Journal] [PubMed]

   Comparison of full and reduced globus pallidus models (Hendrickson 2010) [Model]

Hendrickson EB, Edgerton JR, Jaeger D (2011) The use of automated parameter searches to improve ion channel kinetics for neural modeling. J Comput Neurosci [PubMed]

Huys QJ, Ahrens MB, Paninski L (2006) Efficient estimation of detailed single-neuron models. J Neurophysiol 96:872-90 [Journal] [PubMed]

   Efficient estimation of detailed single-neuron models (Huys et al. 2006) [Model]

Huys QJ, Paninski L (2009) Smoothing of, and parameter estimation from, noisy biophysical recordings. PLoS Comput Biol 5:e1000379-80 [Journal] [PubMed]

   Smoothing of, and parameter estimation from, noisy biophysical recordings (Huys & Paninski 2009) [Model]

Jolivet R, Kobayashi R, Rauch A, Naud R, Shinomoto S, Gerstner W (2008) A benchmark test for a quantitative assessment of simple neuron models. J Neurosci Methods 169:417-24 [Journal] [PubMed]

   Spike Response Model simulator (Jolivet et al. 2004, 2006, 2008) [Model]

Keren N, Peled N, Korngreen A (2005) Constraining compartmental models using multiple voltage recordings and genetic algorithms. J Neurophysiol 94:3730-42 [Journal] [PubMed]

Lamb DG, Calabrese RL (2013) Correlated conductance parameters in leech heart motor neurons contribute to motor pattern formation. PLoS One 8:e79267 [Journal] [PubMed]

   Leech Heart (HE) Motor Neuron conductances contributions to NN activity (Lamb & Calabrese 2013) [Model]

Lepora NF, Overton PG,Gurney K (2012) Efficient fitting of conductance-based model neurons from somatic current clamp. J. Comp. Neuro. 32(1):1-24 [Journal] [PubMed]

   Parameter estimation for Hodgkin-Huxley based models of cortical neurons (Lepora et al. 2011) [Model]

Magistretti J, Castelli L, Forti L, D'Angelo E (2006) Kinetic and functional analysis of transient, persistent and resurgent sodium currents in rat cerebellar granule cells in situ: an electrophysiological and modelling study. J Physiol 573:83-106 [PubMed]

Masoli S, Solinas S, D'Angelo E (2015) Action potential processing in a detailed Purkinje cell model reveals a critical role for axonal compartmentalization. Front Cell Neurosci 9:47 [Journal] [PubMed]

   A detailed Purkinje cell model (Masoli et al 2015) [Model]

Mensi S, Naud R, Pozzorini C, Avermann M, Petersen CC, Gerstner W (2012) Parameter Extraction and Classification of Three Cortical Neuron Types Reveals Two Distinct Adaptation Mechanisms J Neurophysiol 107(6):1756-1775 [Journal] [PubMed]

   Extraction and classification of three cortical neuron types (Mensi et al. 2012) [Model]

Nowotny T, Levi R, Selverston AI (2008) Probing the dynamics of identified neurons with a data-driven modeling approach. PLoS ONE 3:e2627 [Journal] [PubMed]

   Data-driven, HH-type model of the lateral pyloric (LP) cell in the STG (Nowotny et al. 2008) [Model]

Roberts CB, Best JA, Suter KJ (2006) Dendritic processing of excitatory synaptic input in hypothalamic gonadotropin releasing-hormone neurons. Endocrinology 147:1545-55 [Journal] [PubMed]

   Dendritic processing of excitatory synaptic input in GnRH neurons (Roberts et al. 2006) [Model]

Rumbell TH, Draguljic D, Yadav A, Hof PR, Luebke JI, Weaver CM (2016) Automated evolutionary optimization of ion channel conductances and kinetics in models of young and aged rhesus monkey pyramidal neurons. J Comput Neurosci 41:65-90 [Journal] [PubMed]

   Rhesus Monkey Young and Aged L3 PFC Pyramidal Neurons (Rumbell et al. 2016) [Model]

Shapiro NP, Lee R (2007) Synaptic Amplification versus Bistablility in Motoneuron Dendritic Processing: A Top-down Modeling Approach. J Neurophysiol 97:3948-3960 [PubMed]

Solinas S, Forti L, Cesana E, Mapelli J, De Schutter E, D`Angelo E (2007) Computational reconstruction of pacemaking and intrinsic electroresponsiveness in cerebellar golgi cells. Front. Cell. Neurosci. 1:2:1-12 [Journal] [PubMed]

   Cerebellar Golgi cell (Solinas et al. 2007a, 2007b) [Model]

Stiefel KM, Sejnowski TJ (2007) Mapping Function onto Neuronal Morphology. J Neurophysiol 98:513-526 [Journal] [PubMed]

   Mapping function onto neuronal morphology (Stiefel and Sejnowski 2007) [Model]

Tobin AE, Calabrese RL (2006) Endogenous and half-center bursting in morphologically inspired models of leech heart interneurons. J Neurophysiol 96:2089-106 [Journal] [PubMed]

Weaver CM, Wearne SL (2006) The role of action potential shape and parameter constraints in optimization of compartment models Neurocomputing 69:1053-1057 [Journal]

   AP shape and parameter constraints in optimization of compartment models (Weaver and Wearne 2006) [Model]

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