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Ermentrout GB (2002) Simulating, Analyzing, and Animating Dynamical System: A Guide to XPPAUT for Researchers and Students Society for Industrial and Applied Mathematics (SIAM)

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Acker CD, Kopell N, White JA (2003) Synchronization of strongly coupled excitatory neurons: relating network behavior to biophysics. J Comput Neurosci 15:71-90 [PubMed]

Acker CD, White JA (2007) Roles of IA and morphology in action potential propagation in CA1 pyramidal cell dendrites. J Comput Neurosci 23:201-16 [Journal] [PubMed]

  • Roles of I(A) and morphology in AP prop. in CA1 pyramidal cell dendrites (Acker and White 2007) [Model]

Atherton LA, Prince LY, Tsaneva-Atanasova K (2016) Bifurcation analysis of a two-compartment hippocampal pyramidal cell model. J Comput Neurosci 41:91-106 [Journal] [PubMed]

  • Fully continuous Pinsky-Rinzel model for bifurcation analysis (Atherton et al. 2016) [Model]

Ausborn J, Snyder AC, Shevtsova NA, Rybak IA, Rubin JE (2018) State-dependent rhythmogenesis and frequency control in a half-center locomotor CPG. J Neurophysiol 119:96-117 [Journal] [PubMed]

  • State-dependent rhythmogenesis in a half-center locomotor CPG (Ausburn et al 2017) [Model]

Bertram R, Egli M, Toporikova N, Freeman ME (2006) A mathematical model for the mating-induced prolactin rhythm of female rats. Am J Physiol Endocrinol Metab 290:E573-82 [Journal] [PubMed]

  • Oxytocin and VIP involvement in prolactin secretion (Egli et al. 2004,2006, Bertram et al. 2006) [Model]

Bertram R, Rhoads J, Cimbora WP (2008) A phantom bursting mechanism for episodic bursting. Bull Math Biol 70:1979-93 [Journal] [PubMed]

  • A phantom bursting mechanism for episodic bursting (Bertram et al 2008) [Model]

Best J, Park C, Terman D, Wilson C (2007) Transitions between irregular and rhythmic firing patterns in excitatory-inhibitory neuronal networks. J Comput Neurosci 23:217-35 [Journal] [PubMed]

Booth V, Xique I, Diniz Behn C (2017) One-Dimensional Map for the Circadian Modulation of Sleep in a Sleep-Wake Regulatory Network Model for Human Sleep SIAM Journal on Applied Dynamical Systems 16:1089-1112 [Journal]

  • Human sleep-wake regulatory network model (Gleit et al 2013, Booth et al 2017) [Model]

Bose A, Manor Y, Nadim F (2004) The activity phase of postsynaptic neurons in a simplified rhythmic network. J Comput Neurosci 17:245-61 [Journal] [PubMed]

  • The activity phase of postsynaptic neurons (Bose et al 2004) [Model]

Breen BJ, Gerken WC, Butera RJ (2003) Hybrid integrate-and-fire model of a bursting neuron. Neural Comput 15:2843-62 [Journal] [PubMed]

Brette R, Rudolph M, Carnevale T, Hines M, Beeman D, Bower JM, Diesmann M, Morrison A, Goodman PH, Harris FC, Zirpe M, Natschläger T, Pecevski D, Ermentrout B, Djurfeldt M, Lansner A, Rochel O, Vieville T, Muller E, Davison AP, El Boustani S, Destexhe A (2007) Simulation of networks of spiking neurons: a review of tools and strategies. J Comput Neurosci 23:349-98 [Journal] [PubMed]

  • Networks of spiking neurons: a review of tools and strategies (Brette et al. 2007) [Model]
  • Thalamocortical Relay cell under current clamp in high-conductance state (Zeldenrust et al 2018) [Model]

Brown E, Moehlis J, Holmes P (2004) On the phase reduction and response dynamics of neural oscillator populations. Neural Comput 16:673-715 [Journal] [PubMed]

Chandrasekaran L, Matveev V, Bose A (2009) Multistability of clustered states in a globally inhibitory network Physica D: Nonlinear Phenomena 238(3):253-263 [Journal]

  • Multistability of clustered states in a globally inhibitory network (Chandrasekaran et al. 2009) [Model]

Chen BS, Lo YC, Lius YC, Wu SN (2010) Effects of transient receptor potential-like current on the firing pattern of action potentials in the Hodgkin-Huxley neuron during exposure to sinusoidal external voltage. Chin J Physiol 53:423-9 [Journal] [PubMed]

  • Effect of trp-like current on APs during exposure to sinusoidal voltage (Chen et al. 2010) [Model]
  • Squid axon (Hodgkin, Huxley 1952) used in (Chen et al 2010) (R language) [Model]

Chen M, Guo D, Wang T, Jing W, Xia Y, Xu P, Luo C, Valdes-Sosa PA, Yao D (2014) Bidirectional control of absence seizures by the basal ganglia: a computational evidence. PLoS Comput Biol 10:e1003495 [Journal] [PubMed]

  • Basal ganglia-corticothalamic (BGCT) network (Chen et al., 2014) [Model]

Coggan JS, Ocker GK, Sejnowski TJ, Prescott SA (2011) Explaining pathological changes in axonal excitability through dynamical analysis of conductance-based models. J Neural Eng 8:065002 [Journal] [PubMed]

  • Explaining pathological changes in axonal excitability by dynamical analysis (Coggan et al. 2011) [Model]

Coggan JS, Prescott SA, Bartol TM, Sejnowski TJ (2010) Imbalance of ionic conductances contributes to diverse symptoms of demyelination. Proc Natl Acad Sci U S A 107:20602-9 [Journal] [PubMed]

Conte C, Lee R, Sarkar M, Terman D (2018) A mathematical model of recurrent spreading depolarizations. J Comput Neurosci 44:203-217 [Journal] [PubMed]

  • A model for recurrent spreading depolarizations (Conte et al. 2017) [Model]

Corbit VL, Whalen TC, Zitelli KT, Crilly SY, Rubin JE, Gittis AH (2016) Pallidostriatal Projections Promote ß Oscillations in a Dopamine-Depleted Biophysical Network Model. J Neurosci 36:5556-71 [Journal] [PubMed]

  • Pallidostriatal projections promote beta oscillations (Corbit, Whalen, et al 2016) [Model]

Cressman JR, Ullah G, Ziburkus J, Schiff SJ, Barreto E (2009) The influence of sodium and potassium dynamics on excitability, seizures, and the stability of persistent states: I. Single neuron dynamics. J Comput Neurosci 26:159-70 [Journal] [PubMed]

  • Single neuron with dynamic ion concentrations (Cressman et al. 2009) [Model]

Diekman CO, Thomas PJ, Wilson CG (2017) Eupnea, tachypnea, and autoresuscitation in a closed-loop respiratory control model. J Neurophysiol 118:2194-2215 [Journal] [PubMed]

  • Respiratory control model with brainstem CPG and sensory feedback (Diekman, Thomas, and Wilson 2017) [Model]

Egli M, Bertram R, Sellix MT, Freeman ME (2004) Rhythmic secretion of prolactin in rats: action of oxytocin coordinated by vasoactive intestinal polypeptide of suprachiasmatic nucleus origin. Endocrinology 145:3386-94 [Journal] [PubMed]

  • Oxytocin and VIP involvement in prolactin secretion (Egli et al. 2004,2006, Bertram et al. 2006) [Model]

Ermentrout B, Wang JW, Flores J, Gelperin A (2004) Model for transition from waves to synchrony in the olfactory lobe of Limax. J Comput Neurosci 17:365-83 [Journal] [PubMed]

Fernandez FR, Engbers JD, Turner RW (2007) Firing dynamics of cerebellar purkinje cells. J Neurophysiol 98:278-94 [Journal] [PubMed]

Fernandez FR, Mehaffey WH, Turner RW (2005) Dendritic Na+ current inactivation can increase cell excitability by delaying a somatic depolarizing afterpotential. J Neurophysiol 94:3836-48 [Journal] [PubMed]

  • Dendritic Na inactivation drives a decrease in ISI (Fernandez et al 2005) [Model]

Galán RF, Ermentrout GB, Urban NN (2005) Efficient estimation of phase-resetting curves in real neurons and its significance for neural-network modeling. Phys Rev Lett 94:158101 [Journal] [PubMed]

Gloveli T, Dugladze T, Rotstein HG, Traub RD, Monyer H, Heinemann U, Whittington MA, Kopell NJ (2005) Orthogonal arrangement of rhythm-generating microcircuits in the hippocampus. Proc Natl Acad Sci U S A 102:13295-300 [Journal] [PubMed]

  • Gamma and theta rythms in biophysical models of hippocampus circuits (Kopell et al. 2011) [Model]

Goel P, Gelperin A (2006) A neuronal network for the logic of Limax learning. J Comput Neurosci 21:259-70 [Journal] [PubMed]

Golomb D, Ahissar E, Kleinfeld D (2006) Coding of stimulus frequency by latency in thalamic networks through the interplay of GABAB-mediated feedback and stimulus shape. J Neurophysiol 95:1735-50 [Journal] [PubMed]

  • Coding of stimulus frequency by latency in thalamic networks (Golomb et al 2005) [Model]

Golomb D, Donner K, Shacham L, Shlosberg D, Amitai Y, Hansel D (2007) Mechanisms of firing patterns in fast-spiking cortical interneurons. PLoS Comput Biol 3:e156 [Journal] [PubMed]

  • Fast-spiking cortical interneuron (Golomb et al. 2007) [Model]

Golomb D, Shedmi A, Curtu R, Ermentrout GB (2006) Persistent synchronized bursting activity in cortical tissues with low magnesium concentration: a modeling study. J Neurophysiol 95:1049-67 [Journal] [PubMed]

  • Persistent synchronized bursting activity in cortical tissues (Golomb et al 2005) [Model]

Golomb D, Yue C, Yaari Y (2006) Contribution of persistent Na+ current and M-type K+ current to somatic bursting in CA1 pyramidal cells: combined experimental and modeling study. J Neurophysiol 96:1912-26 [Journal] [PubMed]

  • CA1 pyramidal cell: I_NaP and I_M contributions to somatic bursting (Golomb et al 2006) [Model]

Govaerts W, Sautois B (2006) Computation of the phase response curve: a direct numerical approach. Neural Comput 18:817-47 [Journal] [PubMed]

Guillamon A, McLaughlin DW, Rinzel J (2006) Estimation of synaptic conductances. J Physiol Paris 100:31-42 [Journal] [PubMed]

Günay C, Sieling FH, Dharmar L, Lin WH, Wolfram V, Marley R, Baines RA, Prinz AA (2015) Distal spike initiation zone location estimation by morphological simulation of ionic current filtering demonstrated in a novel model of an identified Drosophila motoneuron. PLoS Comput Biol 11:e1004189 [Journal] [PubMed]

  • Drosophila 3rd instar larval aCC motoneuron (Gunay et al. 2015) [Model]

Harish O, Golomb D (2010) Control of the firing patterns of vibrissa motoneurons by modulatory and phasic synaptic inputs: a modeling study. J Neurophysiol 103:2684-99 [Journal] [PubMed]

  • Control of vibrissa motoneuron firing (Harish and Golomb 2010) [Model]

Hayut I, Fanselow EE, Connors BW, Golomb D (2011) LTS and FS inhibitory interneurons, short-term synaptic plasticity, and cortical circuit dynamics. PLoS Comput Biol 7:e1002248 [Journal] [PubMed]

  • Rate model of a cortical RS-FS-LTS network (Hayut et al. 2011) [Model]

Heitmann S, Breakspear M (2018) Chapter 1 Handbook for the Brain Dynamics Toolbox: Version 2018a :1-88 [Journal]

  • Brain Dynamics Toolbox (Heitmann & Breakspear 2016, 2017, 2018) [Model]

Ho ECY, Truccolo W (2016) Interaction between Synaptic Inhibition and Glial-Potassium Dynamics leads to Diverse Seizure Transition Modes in Biophysical Models of Human Focal Seizures J Comput Neurosci [Journal]

  • Inhibition and glial-K+ interaction leads to diverse seizure transition modes (Ho & Truccolo 2016) [Model]

Huang CW, Cheng JT, Tsai JJ, Wu SN, Huang CC (2009) Diabetic hyperglycemia aggravates seizures and status epilepticus-induced hippocampal damage. Neurotox Res 15:71-81 [Journal] [PubMed]

  • Contribution of ATP-sensitive potassium channels in the neuronal network (Huang et al. 2009) [Model]

Huang CW, Huang CC, Cheng JT, Tsai JJ, Wu SN (2007) Glucose and hippocampal neuronal excitability: role of ATP-sensitive potassium channels. J Neurosci Res 85:1468-77 [Journal] [PubMed]

  • The role of ATP-sensitive potassium channels in a hippocampal neuron (Huang et al. 2007) [Model]

Huang CW, Huang CC, Lin MW, Tsai JJ, Wu SN (2008) The synergistic inhibitory actions of oxcarbazepine on voltage-gated sodium and potassium currents in differentiated NG108-15 neuronal cells and model neurons. Int J Neuropsychopharmacol 11:597-610 [Journal] [PubMed]

  • Synergistic inhibitory action of oxcarbazepine on INa and IK (Huang et al. 2008) [Model]

Huang CW, Huang CC, Wu SN (2007) Activation by zonisamide, a newer antiepileptic drug, of large-conductance calcium-activated potassium channel in differentiated hippocampal neuron-derived H19-7 cells. J Pharmacol Exp Ther 321:98-106 [Journal] [PubMed]

  • Zonisamide-induced inhibition of the firing of APs in hippocampal neurons (Huang et al. 2007) [Model]

Huang CW, Tsai JJ, Huang CC, Wu SN (2009) Experimental and simulation studies on the mechanisms of levetiracetam-mediated inhibition of delayed-rectifier potassium current (KV3.1): contribution to the firing of action potentials. J Physiol Pharmacol 60:37-47 [Journal] [PubMed]

  • Simulation studies on mechanisms of levetiracetam-mediated inhibition of IK(DR) (Huang et al. 2009) [Model]

Huss M, Wang D, Trané C, Wikström M, Hellgren Kotaleski J (2008) An experimentally constrained computational model of NMDA oscillations in lamprey CPG neurons. J Comput Neurosci 25:108-21 [Journal] [PubMed]

  • A simplified model of NMDA oscillations in lamprey locomotor neurons (Huss et al. 2008) [Model]

Jeong HY, Gutkin B (2007) Synchrony of neuronal oscillations controlled by GABAergic reversal potentials. Neural Comput 19:706-29 [Journal] [PubMed]

Kim H (2017) Impact of the localization of dendritic calcium persistent inward current on the input-output properties of spinal motoneuron pool: a computational study. J Appl Physiol (1985) 123:1166-1187 [Journal] [PubMed]

  • Locational influence of dendritic PIC on input-output properties of spinal motoneurons (Kim 2017) [Model]

Kurian M, Crook SM, Jung R (2011) Motoneuron model of self-sustained firing after spinal cord injury. J Comput Neurosci 31:625-45 [Journal] [PubMed]

  • Motoneuron model of self-sustained firing after spinal cord injury (Kurian et al. 2011) [Model]

Kuznetsova AY, Deth RC (2008) A model for modulation of neuronal synchronization by D4 dopamine receptor-mediated phospholipid methylation. J Comput Neurosci 24:314-29 [Journal] [PubMed]

  • Synchronization by D4 dopamine receptor-mediated phospholipid methylation (Kuznetsova, Deth 2008) [Model]

Lin MW, Wang YJ, Liu SI, Lin AA, Lo YC, Wu SN (2008) Characterization of aconitine-induced block of delayed rectifier K+ current in differentiated NG108-15 neuronal cells. Neuropharmacology 54:912-23 [Journal] [PubMed]

  • Properties of aconitine-induced block of KDR current in NG108-15 neurons (Lin et al. 2008) [Model]

Liu YC, Wang YJ, Wu SN (2008) The mechanisms of propofol-induced block on ion currents in differentiated H9c2 cardiac cells. Eur J Pharmacol 590:93-8 [Journal] [PubMed]

  • Efffect of propofol on potassium current in cardiac H9c2 cells (Liu et al. 2008) [Model]

Manninen T, Hituri K, Kotaleski JH, Blackwell KT, Linne ML (2010) Postsynaptic signal transduction models for long-term potentiation and depression. Front Comput Neurosci 4:152 [Journal] [PubMed]

Manor Y, Bose A, Booth V, Nadim F (2003) Contribution of synaptic depression to phase maintenance in a model rhythmic network. J Neurophysiol 90:3513-28 [Journal] [PubMed]

Mattioni M, Cohen U, Le Novère N (2012) Neuronvisio: A Graphical User Interface with 3D Capabilities for NEURON. Front Neuroinform 6:20 [Journal] [PubMed]

  • Neuronvisio: a gui with 3D capabilities for NEURON (Mattioni et al. 2012) [Model]

McDougal RA, Bulanova AS, Lytton WW (2016) Reproducibility in Computational Neuroscience Models and Simulations. IEEE Trans Biomed Eng 63:2021-35 [Journal] [PubMed]

Mehaffey WH, Fernandez FR, Maler L, Turner RW (2007) Regulation of burst dynamics improves differential encoding of stimulus frequency by spike train segregation. J Neurophysiol 98:939-51 [Journal] [PubMed]

Morrison A, Mehring C, Geisel T, Aertsen AD, Diesmann M (2005) Advancing the boundaries of high-connectivity network simulation with distributed computing. Neural Comput 17:1776-801 [Journal] [PubMed]

Olypher AV, Calabrese RL (2007) Using constraints on neuronal activity to reveal compensatory changes in neuronal parameters. J Neurophysiol 98:3749-58 [Journal] [PubMed]

  • Activity constraints on stable neuronal or network parameters (Olypher and Calabrese 2007) [Model]

Park EH, Barreto E, Gluckman BJ, Schiff SJ, So P (2005) A model of the effects of applied electric fields on neuronal synchronization. J Comput Neurosci 19:53-70 [Journal] [PubMed]

Pascual A, Modolo J, Beuter A (2006) Is a computational model useful to understand the effect of deep brain stimulation in Parkinson's disease? J Integr Neurosci 5:541-59 [PubMed]

  • Study of augmented Rubin and Terman 2004 deep brain stim. model in Parkinsons (Pascual et al. 2006) [Model]

Pfeuty B, Mato G, Golomb D, Hansel D (2003) Electrical synapses and synchrony: the role of intrinsic currents. J Neurosci 23:6280-94 [PubMed]

Prescott SA, De Koninck Y, Sejnowski TJ (2008) Biophysical basis for three distinct dynamical mechanisms of action potential initiation. PLoS Comput Biol 4:e1000198 [Journal] [PubMed]

  • Dynamics of Spike Initiation (Prescott et al. 2008) [Model]

Prescott SA, Ratté S, De Koninck Y, Sejnowski TJ (2006) Nonlinear interaction between shunting and adaptation controls a switch between integration and coincidence detection in pyramidal neurons. J Neurosci 26:9084-97 [Journal] [PubMed]

Purvis LK, Butera RJ (2005) Ionic current model of a hypoglossal motoneuron. J Neurophysiol 93:723-33 [Journal] [PubMed]

  • Ionic current model of a Hypoglossal Motoneuron (Purvis & Butera 2005) [Model]

Purvis LK, Smith JC, Koizumi H, Butera RJ (2007) Intrinsic bursters increase the robustness of rhythm generation in an excitatory network. J Neurophysiol 97:1515-26 [Journal] [PubMed]

  • Pacemaker neurons and respiratory rhythm generation (Purvis et al 2007) [Model]

Ratté S, Prescott SA (2011) ClC-2 channels regulate neuronal excitability, not intracellular chloride levels. J Neurosci 31:15838-43 [Journal] [PubMed]

  • ClC-2 channels regulate neuronal excitability, not intracellular Cl- levels (Ratte & Prescott 2011) [Model]

Rho YA, Prescott SA (2012) Identification of molecular pathologies sufficient to cause neuropathic excitability in primary somatosensory afferents using dynamical systems theory. PLoS Comput Biol 8:e1002524 [Journal] [PubMed]

  • Dorsal root ganglion (primary somatosensory) neurons (Rho & Prescott 2012) [Model]

Roper P, Callaway J, Shevchenko T, Teruyama R, Armstrong W (2003) AHP's, HAP's and DAP's: how potassium currents regulate the excitability of rat supraoptic neurones. J Comput Neurosci 15:367-89 [PubMed]

Rotstein HG, Pervouchine DD, Acker CD, Gillies MJ, White JA, Buhl EH, Whittington MA, Kopell N (2005) Slow and fast inhibition and an H-current interact to create a theta rhythm in a model of CA1 interneuron network. J Neurophysiol 94:1509-18 [Journal] [PubMed]

Rubin JE (2005) Surprising effects of synaptic excitation. J Comput Neurosci 18:333-42 [Journal] [PubMed]

Rubin JE, Shevtsova NA, Ermentrout GB, Smith JC, Rybak IA (2009) Multiple rhythmic states in a model of the respiratory central pattern generator. J Neurophysiol 101:2146-65 [Journal] [PubMed]

  • Respiratory central pattern generator network in mammalian brainstem (Rubin et al. 2009) [Model]

Rubin JE, Terman D (2004) High frequency stimulation of the subthalamic nucleus eliminates pathological thalamic rhythmicity in a computational model. J Comput Neurosci 16:211-35 [Journal] [PubMed]

  • High frequency stimulation of the Subthalamic Nucleus (Rubin and Terman 2004) [Model]
  • Optimal deep brain stimulation of the subthalamic nucleus-a computational study (Feng et al. 2007) [Model]

Saraga F, Ng L, Skinner FK (2006) Distal gap junctions and active dendrites can tune network dynamics. J Neurophysiol 95:1669-82 [Journal] [PubMed]

  • Hippocampal basket cell gap junction network dynamics (Saraga et al. 2006) [Model]

Sekerli M, Butera RJ (2005) Oscillations in a Simple Neuromechanical System: Underlying Mechanisms J Comp Neurosci 19:181-197 [Journal]

Sherfey JS, Soplata AE, Ardid S, Roberts EA, Stanley DA, Pittman-Polletta BR, Kopell NJ (2018) DynaSim: A MATLAB Toolbox for Neural Modeling and Simulation. Front Neuroinform 12:10 [Journal] [PubMed]

  • DynaSim: a MATLAB toolbox for neural modeling and simulation (Sherfey et al 2018) [Model]

Sterratt D, Graham B, Gillies A, Willshaw D (2011) Principles of Computational Modelling in Neuroscience, Cambridge University Press :1-401 [Journal]

  • Principles of Computational Modelling in Neuroscience (Book) (Sterratt et al. 2011) [Model]

Tabak J, Mascagni M, Bertram R (2010) Mechanism for the universal pattern of activity in developing neuronal networks. J Neurophysiol 103:2208-21 [Journal] [PubMed]

  • Universal feature of developing networks (Tabak et al 2010) (CellML) [Model]
  • Universal feature of developing networks (Tabak et al 2010) [Model]

Tabak J, O'Donovan MJ, Rinzel J (2006) Differential control of active and silent phases in relaxation models of neuronal rhythms. J Comput Neurosci 21:307-28 [Journal] [PubMed]

Tabak J, Toporikova N, Freeman ME, Bertram R (2007) Low dose of dopamine may stimulate prolactin secretion by increasing fast potassium currents. J Comput Neurosci 22:211-22 [Journal] [PubMed]

  • Low dose of dopamine may stimulate prolactin secretion by increasing K currents (Tabak et al. 2006) [Model]

Teka W, Tabak J, Bertram R (2012) The relationship between two fast/slow analysis techniques for bursting oscillations. Chaos 22:043117 [Journal] [PubMed]

  • The relationship between two fast/slow analysis techniques for bursting oscill. (Teka et al. 2012) [Model]

Teka W, Tabak J, Vo T, Wechselberger M, Bertram R (2011) The dynamics underlying pseudo-plateau bursting in a pituitary cell model. J Math Neurosci [Journal] [PubMed]

  • The dynamics underlying pseudo-plateau bursting in a pituitary cell model (Teka et al. 2011) [Model]

Tikidji-Hamburyan RA, Narayana V, Bozkus Z, El-Ghazawi TA (2017) Software for Brain Network Simulations: A Comparative Study Front. Neuroinform. [Journal]

  • Brain networks simulators - a comparative study (Tikidji-Hamburyan et al 2017) [Model]

Toporikova N, Tabak J, Freeman ME, Bertram R (2008) A-type K(+) current can act as a trigger for bursting in the absence of a slow variable. Neural Comput 20:436-51 [Journal] [PubMed]

Ujfalussy B, Kiss T (2006) How do glutamatergic and GABAergic cells contribute to synchronization in the medial septum? J Comput Neurosci 21:343-57 [Journal] [PubMed]

Venugopal S, Hamm TM, Crook SM, Jung R (2011) Modulation of inhibitory strength and kinetics facilitates regulation of persistent inward currents and motoneuron excitability following spinal cord injury. J Neurophysiol 106:2167-79 [Journal] [PubMed]

  • Inhibitory control of motoneuron excitability (Venugopal et al 2011) [Model]

Venugopal S, Travers JB, Terman DH (2007) A computational model for motor pattern switching between taste-induced ingestion and rejection oromotor behaviors. J Comput Neurosci 22:223-38 [Journal] [PubMed]

Versace M, Ames H, Léveillé J, Fortenberry B, Gorchetchnikov A (2008) KInNeSS: a modular framework for computational neuroscience. Neuroinformatics 6:291-309 [Journal] [PubMed]

  • KInNeSS : a modular framework for computational neuroscience (Versace et al. 2008) [Model]

Vo T, Bertram R, Tabak J, Wechselberger M (2010) Mixed mode oscillations as a mechanism for pseudo-plateau bursting. J Comput Neurosci 28:443-58 [Journal] [PubMed]

  • Mixed mode oscillations as a mechanism for pseudo-plateau bursting (Vo et al. 2010) [Model]

Wang YJ, Sung RJ, Lin MW, Wu SN (2006) Contribution of BK(Ca)-channel activity in human cardiac fibroblasts to electrical coupling of cardiomyocytes-fibroblasts. J Membr Biol 213:175-85 [Journal] [PubMed]

  • Ventricular cell model (Luo Rudy dynamic model) (Luo Rudy 1994) used in (Wang et al 2006) (XPP) [Model]
  • Ventricular cell model (Guinea-pig-type) (Luo, Rudy 1991, +11 other papers!) (C++) [Model]

Wei Y, Ullah G, Ingram J, Schiff SJ (2014) Oxygen and seizure dynamics: II. Computational modeling. J Neurophysiol 112:213-23 [Journal] [PubMed]

Weigenand A, Schellenberger Costa M, Ngo HV, Claussen JC, Martinetz T (2014) Characterization of K-complexes and slow wave activity in a neural mass model. PLoS Comput Biol 10:e1003923 [Journal] [PubMed]

  • Neural mass model of spindle generation in the isolated thalamus (Schellenberger Costa et al. 2016) [Model]
  • Neural mass model of the sleeping cortex (Weigenand et al 2014) [Model]
  • Neural mass model of the neocortex under sleep regulation (Costa et al 2016) [Model]
  • Neural mass model of the sleeping thalamocortical system (Schellenberger Costa et al 2016) [Model]

Wu SN, Chang HD (2006) Diethyl pyrocarbonate, a histidine-modifying agent, directly stimulates activity of ATP-sensitive potassium channels in pituitary GH(3) cells. Biochem Pharmacol 71:615-23 [Journal] [PubMed]

  • A model for pituitary GH(3) lactotroph (Wu and Chang 2005) [Model]

Wu SN, Chen BS, Lin MW, Liu YC (2008) Contribution of slowly inactivating potassium current to delayed firing of action potentials in NG108-15 neuronal cells: experimental and theoretical studies. J Theor Biol 252:711-21 [Journal] [PubMed]

  • Effect of slowly inactivating IKdr to delayed firing of action potentials (Wu et al. 2008) [Model]

Xu J, Clancy CE (2008) Ionic mechanisms of endogenous bursting in CA3 hippocampal pyramidal neurons: a model study. PLoS One 3:e2056 [Journal] [PubMed]

  • Ionic mechanisms of bursting in CA3 pyramidal neurons (Xu and Clancy 2008) [Model]

Yu N, Canavier CC (2015) A Mathematical Model of a Midbrain Dopamine Neuron Identifies Two Slow Variables Likely Responsible for Bursts Evoked by SK Channel Antagonists and Terminated by Depolarization Block. J Math Neurosci 5:5 [Journal] [PubMed]

  • Phase plane reveals two slow variables in midbrain dopamine neuron bursts (Yu and Canavier, 2015) [Model]

Zachariou M, Alexander SP, Coombes S, Christodoulou C (2013) A biophysical model of endocannabinoid-mediated short term depression in hippocampal inhibition. PLoS One 8:e58926 [Journal] [PubMed]

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