Citation Relationships



Binzegger T, Douglas RJ, Martin KA (2004) A quantitative map of the circuit of cat primary visual cortex. J Neurosci 24:8441-53 [PubMed]

References and models cited by this paper

References and models that cite this paper

Arkhipov A, Gouwens NW, Billeh YN, Gratiy S, Iyer R, Wei Z, Xu Z, Abbasi-Asl R, Berg J, Buice M, Cain N, da Costa N, de Vries S, Denman D, Durand S, Feng D, Jarsky T, Lecoq J, Lee B, Li L, Mihalas S, Ocker GK, Olsen SR, Reid RC, Soler-Llavina G, Sorensen SA, Wang Q, Waters J, Scanziani M, Koch C (2018) Visual physiology of the layer 4 cortical circuit in silico. PLoS Comput Biol 14:e1006535 [Journal] [PubMed]

  • Visual physiology of the layer 4 cortical circuit in silico (Arkhipov et al 2018) [Model]

Avella Gonzalez OJ, van Aerde KI, Mansvelder HD, van Pelt J, van Ooyen A (2014) Inter-network interactions: impact of connections between oscillatory neuronal networks on oscillation frequency and pattern. PLoS One 9:e100899 [Journal] [PubMed]

  • A two networks model of connectivity-dependent oscillatory activity (Avella OJ et al. 2014) [Model]

Banitt Y, Martin KA, Segev I (2007) A biologically realistic model of contrast invariant orientation tuning by thalamocortical synaptic depression. J Neurosci 27:10230-9 [Journal] [PubMed]

  • Contrast invariance by LGN synaptic depression (Banitt et al. 2007) [Model]

Behabadi BF, Polsky A, Jadi M, Schiller J, Mel BW (2012) Location-dependent excitatory synaptic interactions in pyramidal neuron dendrites. PLoS Comput Biol 8:e1002599 [Journal] [PubMed]

  • Excitatory synaptic interactions in pyramidal neuron dendrites (Behabadi et al. 2012) [Model]

Chadderdon GL, Mohan A, Suter BA, Neymotin SA, Kerr CC, Francis JT, Shepherd GM, Lytton WW (2014) Motor cortex microcircuit simulation based on brain activity mapping. Neural Comput 26:1239-62 [Journal] [PubMed]

  • Motor cortex microcircuit simulation based on brain activity mapping (Chadderdon et al. 2014) [Model]

Destexhe A (2009) Self-sustained asynchronous irregular states and Up-Down states in thalamic, cortical and thalamocortical networks of nonlinear integrate-and-fire neurons. J Comput Neurosci 27:493-506 [Journal] [PubMed]

  • Asynchronous irregular and up/down states in excitatory and inhibitory NNs (Destexhe 2009) [Model]

Djurfeldt M (2012) The connection-set algebra--a novel formalism for the representation of connectivity structure in neuronal network models. Neuroinformatics 10:287-304 [Journal] [PubMed]

  • Connection-set Algebra (CSA) for the representation of connectivity in NN models (Djurfeldt 2012) [Model]

Esposito U, Giugliano M, Vasilaki E (2014) Adaptation of short-term plasticity parameters via error-driven learning may explain the correlation between activity-dependent synaptic properties, connectivity motifs and target specificity. Front Comput Neurosci 8:175 [Journal] [PubMed]

  • Adaptation of Short-Term Plasticity parameters (Esposito et al. 2015) [Model]

Ferrario A, Merrison-Hort R, Soffe SR, Borisyuk R (2018) Structural and functional properties of a probabilistic model of neuronal connectivity in a simple locomotor network. Elife [Journal] [PubMed]

  • Model of the Xenopus tadpole swimming spinal network (Roberts et al. 2014) [Model]

Hagen E, Fossum JC, Pettersen KH, Alonso JM, Swadlow HA, Einevoll GT (2017) Focal Local Field Potential Signature of the Single-Axon Monosynaptic Thalamocortical Connection. J Neurosci 37:5123-5143 [Journal] [PubMed]

  • LFP signature of monosynaptic thalamocortical connection (Hagen et al 2017) [Model]

Hay E, Segev I (2015) Dendritic Excitability and Gain Control in Recurrent Cortical Microcircuits. Cereb Cortex 25:3561-71 [Journal] [PubMed]

  • Layer V pyramidal cell model with reduced morphology (Mäki-Marttunen et al 2018) [Model]
  • Microcircuits of L5 thick tufted pyramidal cells (Hay & Segev 2015) [Model]

Heinzle J, Hepp K, Martin KA (2007) A microcircuit model of the frontal eye fields. J Neurosci 27:9341-53 [Journal] [PubMed]

  • A microcircuit model of the frontal eye fields (Heinzle et al. 2007) [Model]

Hooks BM, Hires SA, Zhang YX, Huber D, Petreanu L, Svoboda K, Shepherd GM (2011) Laminar analysis of excitatory local circuits in vibrissal motor and sensory cortical areas. PLoS Biol 9:e1000572 [Journal] [PubMed]

  • Laminar analysis of excitatory circuits in vibrissal motor and sensory cortex (Hooks et al. 2011) [Model]

Iannella N, Tanaka S (2006) Synaptic efficacy cluster formation across the dendrite via STDP. Neurosci Lett 403:24-9 [Journal] [PubMed]

Kaiser M, Hilgetag CC (2010) Optimal hierarchical modular topologies for producing limited sustained activation of neural networks Front. Neuroinform. [Journal]

  • Network topologies for producing limited sustained activation (Kaiser and Hilgetag 2010) [Model]

Kerr CC, Neymotin SA, Chadderdon GL, Fietkiewicz CT, Francis JT, Lytton WW (2012) Electrostimulation as a prosthesis for repair of information flow in a computer model of neocortex. IEEE Trans Neural Syst Rehabil Eng 20:153-60 [Journal] [PubMed]

  • Prosthetic electrostimulation for information flow repair in a neocortical simulation (Kerr 2012) [Model]

Kerr CC, Van Albada SJ, Neymotin SA, Chadderdon GL, Robinson PA, Lytton WW (2013) Cortical information flow in Parkinson's disease: a composite network/field model. Front Comput Neurosci 7:39 [Journal] [PubMed]

  • Composite spiking network/neural field model of Parkinsons (Kerr et al 2013) [Model]

Lavzin M, Rapoport S, Polsky A, Garion L, Schiller J (2012) Nonlinear dendritic processing determines angular tuning of barrel cortex neurons in vivo. Nature 490:397-401 [Journal] [PubMed]

  • Nonlinear dendritic processing in barrel cortex spiny stellate neurons (Lavzin et al. 2012) [Model]

London M, Roth A, Beeren L, Häusser M, Latham PE (2010) Sensitivity to perturbations in vivo implies high noise and suggests rate coding in cortex. Nature 466:123-7 [Journal] [PubMed]

  • Perturbation sensitivity implies high noise and suggests rate coding in cortex (London et al. 2010) [Model]

Lundqvist M, Rehn M, Djurfeldt M, Lansner A (2006) Attractor dynamics in a modular network model of neocortex. Network 17:253-76 [Journal] [PubMed]

Marre O, Yger P, Davison AP, Frégnac Y (2009) Reliable recall of spontaneous activity patterns in cortical networks. J Neurosci 29:14596-606 [Journal] [PubMed]

Martínez-Cañada P, Mobarhan MH, Halnes G, Fyhn M, Morillas C, Pelayo F, Einevoll GT (2018) Biophysical network modeling of the dLGN circuit: Effects of cortical feedback on spatial response properties of relay cells. PLoS Comput Biol 14:e1005930 [Journal] [PubMed]

  • Cortical feedback alters visual response properties of dLGN relay cells (Martínez-Cañada et al 2018) [Model]

Neymotin SA, Lee H, Park E, Fenton AA, Lytton WW (2011) Emergence of physiological oscillation frequencies in a computer model of neocortex. Front Comput Neurosci 5:19 [Journal] [PubMed]

  • Emergence of physiological oscillation frequencies in neocortex simulations (Neymotin et al. 2011) [Model]

Park J, Papoutsi A, Ash RT, Marin MA, Poirazi P, Smirnakis SM (2019) Contribution of apical and basal dendrites to orientation encoding in mouse V1 L2/3 pyramidal neurons Nature Communications 10:5372 [Journal]

  • Orientation preference in L23 V1 pyramidal neurons (Park et al 2019) [Model]

Potjans TC, Diesmann M (2014) The cell-type specific cortical microcircuit: relating structure and activity in a full-scale spiking network model. Cereb Cortex 24:785-806 [Journal] [PubMed]

  • A full-scale cortical microcircuit spiking network model (Shimoura et al 2018) [Model]

Quax S, Jensen O, Tiesinga P (2017) Top-down control of cortical gamma-band communication via pulvinar induced phase shifts in the alpha rhythm. PLoS Comput Biol 13:e1005519 [Journal] [PubMed]

Reimann MW, Horlemann AL, Ramaswamy S, Muller EB, Markram H (2017) Morphological Diversity Strongly Constrains Synaptic Connectivity and Plasticity. Cereb Cortex 27:4570-4585 [Journal] [PubMed]

  • The neocortical microcircuit collaboration portal (Markram et al. 2015) [Model]

Rowan MS, Neymotin SA (2013) Synaptic Scaling Balances Learning in a Spiking Model of Neocortex Adaptive and Natural Computing Algorithms, Tomassini M, Antonioni A, Daolio F, Buesser P, ed. pp.20 [Journal]

  • Synaptic scaling balances learning in a spiking model of neocortex (Rowan & Neymotin 2013) [Model]

Rowan MS, Neymotin SA, Lytton WW (2014) Electrostimulation to reduce synaptic scaling driven progression of Alzheimer's disease. Front Comput Neurosci 8:39 [Journal] [PubMed]

  • Electrostimulation to reduce synaptic scaling driven progression of Alzheimers (Rowan et al. 2014) [Model]

Schmidt M, Bakker R, Hilgetag CC, Diesmann M, van Albada SJ (2018) Multi-scale account of the network structure of macaque visual cortex. Brain Struct Funct 223:1409-1435 [Journal] [PubMed]

  • Multi-area layer-resolved spiking network model of resting-state dynamics in macaque visual cortex [Model]

Schmidt M, Bakker R, Shen K, Bezgin G, Diesmann M, van Albada SJ (2018) A multi-scale layer-resolved spiking network model of resting-state dynamics in macaque visual cortical areas. PLoS Comput Biol 14:e1006359 [Journal] [PubMed]

  • Multi-area layer-resolved spiking network model of resting-state dynamics in macaque visual cortex [Model]

Shai AS, Anastassiou CA, Larkum ME, Koch C (2015) Physiology of layer 5 pyramidal neurons in mouse primary visual cortex: coincidence detection through bursting. PLoS Comput Biol 11:e1004090 [Journal] [PubMed]

  • Layer 5 Pyramidal Neuron (Shai et al., 2015) [Model]

Shimoura RO, Kamiji NL, Pena RFO, Cordeiro VL, Ceballos CC, Cecilia R, Roque AC (2018) [Re] The cell-type specific cortical microcircuit: relating structure and activity in a full-scale spiking network model The ReScience Journal [Journal]

  • A full-scale cortical microcircuit spiking network model (Shimoura et al 2018) [Model]

Shu Y, Hasenstaub A, Duque A, Yu Y, McCormick DA (2006) Modulation of intracortical synaptic potentials by presynaptic somatic membrane potential. Nature 441:761-5 [Journal] [PubMed]

  • Intracortical synaptic potential modulation by presynaptic somatic potential (Shu et al. 2006, 2007) [Model]

Shu Y, Yu Y, Yang J, McCormick DA (2007) Selective control of cortical axonal spikes by a slowly inactivating K+ current. Proc Natl Acad Sci U S A 104:11453-8 [Journal] [PubMed]

  • Selective control of cortical axonal spikes by a slowly inactivating K+ current (Shu et al. 2007) [Model]

Shushruth S, Mangapathy P, Ichida JM, Bressloff PC, Schwabe L, Angelucci A (2012) Strong recurrent networks compute the orientation tuning of surround modulation in the primate primary visual cortex. J Neurosci 32:308-21 [Journal] [PubMed]

  • Surround Suppression in V1 via Withdraw of Balanced Local Excitation in V1 (Shushruth 2012) [Model]

Tomov P, Pena RF, Roque AC, Zaks MA (2016) Mechanisms of Self-Sustained Oscillatory States in Hierarchical Modular Networks with Mixtures of Electrophysiological Cell Types. Front Comput Neurosci 10:23 [Journal] [PubMed]

  • Dynamics in random NNs with multiple neuron subtypes (Pena et al 2018, Tomov et al 2014, 2016) [Model]

Tomov P, Pena RF, Zaks MA, Roque AC (2014) Sustained oscillations, irregular firing, and chaotic dynamics in hierarchical modular networks with mixtures of electrophysiological cell types. Front Comput Neurosci 8:103 [Journal] [PubMed]

  • Dynamics in random NNs with multiple neuron subtypes (Pena et al 2018, Tomov et al 2014, 2016) [Model]

Tomsett RJ, Ainsworth M, Thiele A, Sanayei M, Chen X, Gieselmann MA, Whittington MA, Cunningham MO, Kaiser M (2015) Virtual Electrode Recording Tool for EXtracellular potentials (VERTEX): comparing multi-electrode recordings from simulated and biological mammalian cortical tissue. Brain Struct Funct 220:2333-53 [Journal] [PubMed]

  • Large-scale model of neocortical slice in vitro exhibiting persistent gamma (Tomsett et al. 2014) [Model]

Weiler N, Wood L, Yu J, Solla SA, Shepherd GM (2008) Top-down laminar organization of the excitatory network in motor cortex. Nat Neurosci 11:360-6 [Journal] [PubMed]

  • Laminar connectivity matrix simulation (Weiler et al 2008) [Model]

(40 refs)