References and models cited by this paper

References and models that cite this paper

Acker CD, Kopell N, White JA (2003) Synchronization of strongly coupled excitatory neurons: relating network behavior to biophysics. J Comput Neurosci 15:71-90 [PubMed]

Badoual M, Zou Q, Davison AP, Rudolph M, Bal T, Frégnac Y, Destexhe A (2006) Biophysical and phenomenological models of multiple spike interactions in spike-timing dependent plasticity. Int J Neural Syst 16:79-97 [Journal] [PubMed]

Baker JL, Perez-Rosello T, Migliore M, Barrionuevo G, Ascoli GA (2011) A computer model of unitary responses from associational/commissural and perforant path synapses in hippocampal CA3 pyramidal cells. J Comput Neurosci 31:137-58 [Journal] [PubMed]

Bartolozzi C, Indiveri G (2007) Synaptic dynamics in analog VLSI. Neural Comput 19:2581-603 [Journal] [PubMed]

Behabadi BF, Polsky A, Jadi M, Schiller J, Mel BW (2012) Location-dependent excitatory synaptic interactions in pyramidal neuron dendrites. PLoS Comput Biol 8:e1002599 [Journal] [PubMed]

Brette R, Piwkowska Z, Monier C, Rudolph-Lilith M, Fournier J, Levy M, Frégnac Y, Bal T, Destexhe A (2008) High-resolution intracellular recordings using a real-time computational model of the electrode. Neuron 59:379-91 [Journal] [PubMed]

Brunel N, Wang XJ (2001) Effects of neuromodulation in a cortical network model of object working memory dominated by recurrent inhibition. J Comput Neurosci 11:63-85 [PubMed]

Carnevale NT, Morse TM (1996-2009) Research reports that have used NEURON Web published citations at the NEURON website [Journal]

Cavarretta F, Marasco A, Hines ML, Shepherd GM, Migliore M (2016) Glomerular and Mitral-Granule Cell Microcircuits Coordinate Temporal and Spatial Information Processing in the Olfactory Bulb. Front Comput Neurosci 10:67 [Journal] [PubMed]

Chen N, Li B, Murphy TH, Raymond LA (2004) Site within N-Methyl-D-aspartate receptor pore modulates channel gating. Mol Pharmacol 65:157-64 [Journal] [PubMed]

Chen N, Ren J, Raymond LA, Murphy TH (2001) Changes in agonist concentration dependence that are a function of duration of exposure suggest N-methyl-D-aspartate receptor nonsaturation during synaptic stimulation. Mol Pharmacol 59:212-9 [Journal] [PubMed]

Contreras D, Destexhe A, Steriade M (1997) Intracellular and computational characterization of the intracortical inhibitory control of synchronized thalamic inputs in vivo. J Neurophysiol 78:335-50 [Journal] [PubMed]

Davison A (2004) Biologically-detailed network modelling (Chapter 10) Computation Neuroscience: A Comprehensive Approach, Feng J, ed. pp.287

Davison AP, Feng J, Brown D (2003) Dendrodendritic inhibition and simulated odor responses in a detailed olfactory bulb network model. J Neurophysiol 90:1921-35 [Journal] [PubMed]

Destexhe A (1997) Conductance-based integrate-and-fire models. Neural Comput 9:503-14 [PubMed]

Destexhe A (1998) Spike-and-wave oscillations based on the properties of GABAB receptors. J Neurosci 18:9099-111 [PubMed]

Destexhe A (1999) Can GABAA conductances explain the fast oscillation frequency of absence seizures in rodents? Eur J Neurosci 11:2175-81 [PubMed]

Destexhe A (2000) Modelling corticothalamic feedback and the gating of the thalamus by the cerebral cortex. J Physiol Paris 94:391-410 [PubMed]

Destexhe A (2001) Simplified models of neocortical pyramidal cells preserving somatodendritic voltage attenuation Neurocomputing 38-40:167-173

Destexhe A, Contreras D, Steriade M (1998) Mechanisms underlying the synchronizing action of corticothalamic feedback through inhibition of thalamic relay cells. J Neurophysiol 79:999-1016 [Journal] [PubMed]

Destexhe A, Contreras D, Steriade M (1999) Cortically-induced coherence of a thalamic-generated oscillation. Neuroscience 92:427-43 [PubMed]

Destexhe A, Contreras D, Steriade M (2001) LTS cells in cerebral cortex and their role in generating spike-and-wave oscillations. Neurocomputing 38:555-563 [Journal]

Destexhe A, Pare D (2000) A combined computational and intracellular study of correlated synaptic bombardment in neocortical pyramidal neurons in vivo Neurocomputing 32:113-119

Destexhe A, Rudolph M (2003) Location independence and fast conduction of synaptic inputs in neocortical neurons in vivo Neurocomputing 52-54:233-238

Destexhe A, Sejnowski TJ (2003) Interactions between membrane conductances underlying thalamocortical slow-wave oscillations. Physiol Rev 83:1401-53 [Journal] [PubMed]

Feng J, Li G (2002) Impact of geometrical structures on the output of neuronal models: a theoretical and numerical analysis. Neural Comput 14:621-40 [Journal] [PubMed]

Ferguson KA, Huh CY, Amilhon B, Manseau F, Williams S, Skinner FK (2015) Network models provide insights into how oriens-lacunosum-moleculare and bistratified cell interactions influence the power of local hippocampal CA1 theta oscillations. Front Syst Neurosci 9:110 [Journal] [PubMed]

Ferguson KA, Huh CY, Amilhon B, Williams S, Skinner FK (2013) Experimentally constrained CA1 fast-firing parvalbumin-positive interneuron network models exhibit sharp transitions into coherent high frequency rhythms. Front Comput Neurosci 7:144 [Journal] [PubMed]

Fernández de Sevilla D, Fuenzalida M, Porto Pazos AB, Buño W (2007) Selective shunting of the NMDA EPSP component by the slow afterhyperpolarization in rat CA1 pyramidal neurons. J Neurophysiol 97:3242-55 [Journal] [PubMed]

Fujita T, Fukai T, Kitano K (2012) Influences of membrane properties on phase response curve and synchronization stability in a model globus pallidus neuron. J Comput Neurosci 32:539-53 [Journal] [PubMed]

Gabbiani F, Cox SJ (2010) Mathematics for Neuroscientists :1-486 [Journal]

Graupner M, Brunel N (2007) STDP in a bistable synapse model based on CaMKII and associated signaling pathways. PLoS Comput Biol 3:e221 [Journal] [PubMed]

Halnes G, Augustinaite S, Heggelund P, Einevoll GT, Migliore M (2011) A multi-compartment model for interneurons in the dorsal lateral geniculate nucleus. PLoS Comput Biol 7:e1002160 [Journal] [PubMed]

Hines ML, Carnevale NT (2001) NEURON: a tool for neuroscientists. Neuroscientist 7:123-35 [Journal] [PubMed]

Hines ML, Carnevale NT (2003) Personal Communication of NEURON bibliography

Hô N, Destexhe A (2000) Synaptic background activity enhances the responsiveness of neocortical pyramidal neurons. J Neurophysiol 84:1488-96 [Journal] [PubMed]

Hoshino O (2007) Enhanced sound perception by widespread-onset neuronal responses in auditory cortex. Neural Comput 19:3310-34 [Journal] [PubMed]

Hoshino O, Zheng M, Watanabe K (2018) Perceptual judgments via sensory-motor interaction assisted by cortical GABA. J Comput Neurosci 44:233-251 [Journal] [PubMed]

Houweling AR, Bazhenov M, Timofeev I, Grenier F, Steriade M, Sejnowski TJ (2002) Frequency-selective augmenting responses by short-term synaptic depression in cat neocortex. J Physiol 542:599-617 [PubMed]

Hübel N, Hosseini-Zare MS, Žiburkus J, Ullah G (2017) The role of glutamate in neuronal ion homeostasis: A case study of spreading depolarization. PLoS Comput Biol 13:e1005804 [Journal] [PubMed]

Hummos A, Franklin CC, Nair SS (2014) Intrinsic mechanisms stabilize encoding and retrieval circuits differentially in a hippocampal network model. Hippocampus 24:1430-48 [Journal] [PubMed]

Hummos A, Nair SS (2017) An integrative model of the intrinsic hippocampal theta rhythm. PLoS One 12:e0182648 [Journal] [PubMed]

Jeong HY, Gutkin B (2007) Synchrony of neuronal oscillations controlled by GABAergic reversal potentials. Neural Comput 19:706-29 [Journal] [PubMed]

Jones SR, Pinto DJ, Kaper TJ, Kopell N (2000) Alpha-frequency rhythms desynchronize over long cortical distances: a modeling study. J Comput Neurosci 9:271-91 [PubMed]

Karameh FN, Dahleh MA, Brown EN, Massaquoi SG (2006) Modeling the contribution of lamina 5 neuronal and network dynamics to low frequency EEG phenomena. Biol Cybern 95:289-310 [Journal] [PubMed]

Kilinc D, Demir A (2017) Noise in Neuronal and Electronic Circuits: A General Modeling Framework and Non-Monte Carlo Simulation Techniques. IEEE Trans Biomed Circuits Syst 11:958-974 [Journal] [PubMed]

Kilinc D, Demir A (2018) Spike timing precision of neuronal circuits. J Comput Neurosci 44:341-362 [Journal] [PubMed]

Kilinc D,Demir A (2015) Simulation of noise in neurons and neuronal circuits Proceedings of the IEEE/ACM international conference on computer-aided design (ICCAD) :589-596 [Journal]

Kitano K, Fukai T (2007) Variability v.s. synchronicity of neuronal activity in local cortical network models with different wiring topologies. J Comput Neurosci 23:237-50 [Journal] [PubMed]

Kobayashi R, Kurita S, Kurth A, Kitano K, Mizuseki K, Diesmann M, Richmond BJ, Shinomoto S (2019) Reconstructing neuronal circuitry from parallel spike trains. Nat Commun 10:4468 [Journal] [PubMed]

Komendantov AO, Komendantova OG, Johnson SW, Canavier CC (2004) A modeling study suggests complementary roles for GABAA and NMDA receptors and the SK channel in regulating the firing pattern in midbrain dopamine neurons. J Neurophysiol 91:346-57 [Journal] [PubMed]

Kozloski J, Wagner J (2011) An Ultrascalable Solution to Large-scale Neural Tissue Simulation. Front Neuroinform 5:15 [Journal] [PubMed]

Linaro D, Storace M, Giugliano M (2011) Accurate and fast simulation of channel noise in conductance-based model neurons by diffusion approximation. PLoS Comput Biol 7:e1001102 [Journal] [PubMed]

Liu Y, Milton J, Campbell SA (2019) Outgrowing seizures in Childhood Absence Epilepsy: time delays and bistability. J Comput Neurosci [Journal] [PubMed]

Matsui H, Zheng M, Hoshino O (2014) Facilitation of neuronal responses by intrinsic default mode network activity. Neural Comput 26:2441-64 [Journal] [PubMed]

Mazza M, de Pinho M, Piqueira JR, Roque AC (2004) A dynamical model of fast cortical reorganization. J Comput Neurosci 16:177-201 [Journal] [PubMed]

Mukunda CL, Narayanan R (2017) Degeneracy in the regulation of short-term plasticity and synaptic filtering by presynaptic mechanisms. J Physiol 595:2611-2637 [Journal] [PubMed]

Narayanan R, Chattarji S (2010) Computational analysis of the impact of chronic stress on intrinsic and synaptic excitability in the hippocampus. J Neurophysiol 103:3070-83 [Journal] [PubMed]

Nicola W, Campbell SA (2013) Bifurcations of large networks of two-dimensional integrate and fire neurons. J Comput Neurosci 35:87-108 [Journal] [PubMed]

Nowotny T, Rabinovich MI, Huerta R, Abarbanel HD (2003) Decoding temporal information through slow lateral excitation in the olfactory system of insects. J Comput Neurosci 15:271-81 [PubMed]

Paré D, Lang EJ, Destexhe A (1998) Inhibitory control of somatodendritic interactions underlying action potentials in neocortical pyramidal neurons in vivo: an intracellular and computational study. Neuroscience 84:377-402 [PubMed]

Pervouchine DD, Netoff TI, Rotstein HG, White JA, Cunningham MO, Whittington MA, Kopell NJ (2006) Low-dimensional maps encoding dynamics in entorhinal cortex and hippocampus. Neural Comput 18:2617-50 [Journal] [PubMed]

Pinto DJ, Jones SR, Kaper TJ, Kopell N (2003) Analysis of State-Dependent Transitions in Frequency and Long-Distance Coordination in a Model Oscillatory Cortical Circuit Journal of Computational Neuroscience 15:283-298 [Journal] [PubMed]

Poirazi P, Brannon T, Mel BW (2003ab-sup) Online Supplement: About the Model Neuron 37 Online:1-20 [Journal]

Prescott SA, De Koninck Y (2003) Gain control of firing rate by shunting inhibition: roles of synaptic noise and dendritic saturation. Proc Natl Acad Sci U S A 100:2076-81 [Journal] [PubMed]

Prescott SA, Sejnowski TJ, De Koninck Y (2006) Reduction of anion reversal potential subverts the inhibitory control of firing rate in spinal lamina I neurons: towards a biophysical basis for neuropathic pain. Mol Pain 2:32 [Journal] [PubMed]

Rubchinsky LL, Kopell N, Sigvardt KA (2003) Modeling facilitation and inhibition of competing motor programs in basal ganglia subthalamic nucleus-pallidal circuits. Proc Natl Acad Sci U S A 100:14427-32 [Journal] [PubMed]

Rudolph M, Destexhe A (2001) Do neocortical pyramidal neurons display stochastic resonance? J Comput Neurosci 11:19-42 [PubMed]

Rudolph M, Destexhe A (2002) Point-conductance models of cortical neurons with high discharge variability Neurocomputing 44-46:147-152

Rudolph M, Destexhe A (2002) Novel dynamics of dendritic integration in the high conductance state of cortical neurons. Neurocomputing 44-46:141-146

Rudolph M, Destexhe A (2003) Characterization of subthreshold voltage fluctuations in neuronal membranes. Neural Comput 15:2577-618 [Journal] [PubMed]

Rudolph M, Destexhe A (2003) Tuning neocortical pyramidal neurons between integrators and coincidence detectors. J Comput Neurosci 14:239-51 [PubMed]

Rudolph M, Destexhe A (2003) The discharge variability of neocortical neurons during high-conductance states. Neuroscience 119:855-73 [PubMed]

Rudolph M, Destexhe A (2004) Inferring network activity from synaptic noise. J Physiol Paris 98:452-66 [Journal] [PubMed]

Rudolph M, Destexhe A (2006) Analytical integrate-and-fire neuron models with conductance-based dynamics for event-driven simulation strategies. Neural Comput 18:2146-210 [Journal] [PubMed]

Rudolph M, Ho N, Destexhe A (2001) Synaptic background activity affects the dynamics of dendritic integration in model neocortical pyramidal neurons Neurocomputing 38-40:327-333

Shapiro BE (2001) Osmotic forces and gap junctions in spreading depression: a computational model. J Comput Neurosci 10:99-120 [PubMed]

Stacey WC, Durand DM (2000) Stochastic resonance improves signal detection in hippocampal CA1 neurons. J Neurophysiol 83:1394-402 [Journal] [PubMed]

Stacey WC, Durand DM (2001) Synaptic noise improves detection of subthreshold signals in hippocampal CA1 neurons. J Neurophysiol 86:1104-12 [Journal] [PubMed]

Stacey WC, Durand DM (2002) Noise and coupling affect signal detection and bursting in a simulated physiological neural network. J Neurophysiol 88:2598-611 [Journal] [PubMed]

Sterratt D, Graham B, Gillies A, Willshaw D (2011) Principles of Computational Modelling in Neuroscience, Cambridge University Press :1-401 [Journal]

Thomson AM, Destexhe A (1999) Dual intracellular recordings and computational models of slow inhibitory postsynaptic potentials in rat neocortical and hippocampal slices. Neuroscience 92:1193-215 [PubMed]

Tripp B, Eliasmith C (2007) Neural populations can induce reliable postsynaptic currents without observable spike rate changes or precise spike timing. Cereb Cortex 17:1830-40 [Journal] [PubMed]

Wolfart J, Debay D, Le Masson G, Destexhe A, Bal T (2005) Synaptic background activity controls spike transfer from thalamus to cortex. Nat Neurosci 8:1760-7 [Journal] [PubMed]

Zhou YD, Acker CD, Netoff TI, Sen K, White JA (2005) Increasing Ca2+ transients by broadening postsynaptic action potentials enhances timing-dependent synaptic depression. Proc Natl Acad Sci U S A 102:19121-5 [Journal] [PubMed]