Citation Relationships



Van Geit W, De Schutter E, Achard P (2008) Automated neuron model optimization techniques: a review. Biol Cybern 99:241-51 [PubMed]

References and models cited by this paper

References and models that cite this paper

De Schutter E (2014) The dangers of plug-and-play simulation using shared models. Neuroinformatics 12:227-8 [Journal] [PubMed]

Dura-Bernal S, Neymotin SA, Kerr CC, Sivagnanam S, Majumdar A, Francis JT, Lytton WW (2017) Evolutionary algorithm optimization of biological learning parameters in a biomimetic neuroprosthesis. IBM Journal of Research and Development (Computational Neuroscience special issue) 61(2/3):6:1-6:14 [Journal]

  • Motor system model with reinforcement learning drives virtual arm (Dura-Bernal et al 2017) [Model]

Fountas Z, Shanahan M (2017) The role of cortical oscillations in a spiking neural network model of the basal ganglia. PLoS One 12:e0189109 [Journal] [PubMed]

  • Cortical oscillations and the basal ganglia (Fountas & Shanahan 2017) [Model]

Friedrich P, Vella M, Gulyás AI, Freund TF, Káli S (2014) A flexible, interactive software tool for fitting the parameters of neuronal models. Front Neuroinform 8:63 [Journal] [PubMed]

  • Software (called Optimizer) for fitting neuronal models (Friedrich et al. 2014) [Model]

Guo T, Tsai D, Morley JW, Suaning GJ, Kameneva T, Lovell NH, Dokos S (2016) Electrical activity of ON and OFF retinal ganglion cells: a modelling study. J Neural Eng 13:025005 [Journal] [PubMed]

  • Retinal ganglion cells responses and activity (Tsai et al 2012, Guo et al 2016) [Model]

Hay E, Hill S, Schürmann F, Markram H, Segev I (2011) Models of neocortical layer 5b pyramidal cells capturing a wide range of dendritic and perisomatic active properties. PLoS Comput Biol 7:e1002107 [Journal] [PubMed]

  • L5b PC model constrained for BAC firing and perisomatic current step firing (Hay et al., 2011) [Model]
  • Layer V pyramidal cell model with reduced morphology (Mäki-Marttunen et al 2018) [Model]
  • Cortical Layer 5b pyr. cell with [Na+]i mechanisms, from Hay et al 2011 (Zylbertal et al 2017) [Model]

Hendrickson EB, Edgerton JR, Jaeger D (2011) The use of automated parameter searches to improve ion channel kinetics for neural modeling. J Comput Neurosci 31:329-46 [Journal] [PubMed]

Jedrzejewski-Szmek Z, Abrahao KP, Jedrzejewska-Szmek J, Lovinger DM, Blackwell KT (2018) Parameter Optimization Using Covariance Matrix Adaptation-Evolutionary Strategy (CMA-ES), an Approach to Investigate Differences in Channel Properties Between Neuron Subtypes. Front Neuroinform 12:47 [Journal] [PubMed]

  • Parameter optimization using CMA-ES (Jedrzejewski-Szmek et al 2018) [Model]

Lepora NF, Overton PG, Gurney K (2012) Efficient fitting of conductance-based model neurons from somatic current clamp. J Comput Neurosci 32:1-24 [Journal] [PubMed]

  • Parameter estimation for Hodgkin-Huxley based models of cortical neurons (Lepora et al. 2011) [Model]

Mäki-Marttunen T, Halnes G, Devor A, Metzner C, Dale AM, Andreassen OA, Einevoll GT (2018) A stepwise neuron model fitting procedure designed for recordings with high spatial resolution: Application to layer 5 pyramidal cells. J Neurosci Methods 293:264-283 [Journal] [PubMed]

  • Layer V pyramidal cell model with reduced morphology (Mäki-Marttunen et al 2018) [Model]

Martínez-Cañada P, Morillas C, Pino B, Ros E, Pelayo F (2016) A Computational Framework for Realistic Retina Modeling. Int J Neural Syst 26:1650030 [Journal] [PubMed]

  • COREM: configurable retina simulator (Martínez-Cañada et al., 2016) [Model]

Neymotin SA, Suter BA, Dura-Bernal S, Shepherd GM, Migliore M, Lytton WW (2017) Optimizing computer models of corticospinal neurons to replicate in vitro dynamics. J Neurophysiol 117:148-162 [Journal] [PubMed]

  • Computer models of corticospinal neurons replicate in vitro dynamics (Neymotin et al. 2017) [Model]

Rumbell T, Kozloski J (2019) Dimensions of control for subthreshold oscillations and spontaneous firing in dopamine neurons PLOS Computational Biology 15:1-34 [Journal]

  • Control of oscillations and spontaneous firing in dopamine neurons (Rumbell & Kozloski 2019) [Model]

Rumbell TH, Draguljic D, Yadav A, Hof PR, Luebke JI, Weaver CM (2016) Automated evolutionary optimization of ion channel conductances and kinetics in models of young and aged rhesus monkey pyramidal neurons. J Comput Neurosci 41:65-90 [Journal] [PubMed]

  • Rhesus Monkey Young and Aged L3 PFC Pyramidal Neurons (Rumbell et al. 2016) [Model]

Venkadesh S, Komendantov AO, Listopad S, Scott EO, De Jong K, Krichmar JL, Ascoli GA (2018) Evolving Simple Models of Diverse Intrinsic Dynamics in Hippocampal Neuron Types. Front Neuroinform 12:8 [Journal] [PubMed]

  • Evolving simple models of diverse dynamics in hippocampal neuron types (Venkadesh et al 2018) [Model]

(15 refs)