Citation Relationships

Martínez-Cañada P, Morillas C, Pino B, Ros E, Pelayo F (2016) A Computational Framework for Realistic Retina Modeling. Int J Neural Syst 26:1650030 [PubMed]

   COREM: configurable retina simulator (Martínez-Cañada et al., 2016)

References and models cited by this paper

References and models that cite this paper

Amthor FR, Grzywacz NM (1991) Nonlinearity of the inhibition underlying retinal directional selectivity. Vis Neurosci 6:197-206 [PubMed]

Baccus SA, Meister M (2002) Fast and slow contrast adaptation in retinal circuitry. Neuron 36:909-19 [PubMed]

Baccus SA, Olveczky BP, Manu M, Meister M (2008) A retinal circuit that computes object motion. J Neurosci 28:6807-17 [Journal] [PubMed]

Beaudoin DL, Borghuis BG, Demb JB (2007) Cellular basis for contrast gain control over the receptive field center of mammalian retinal ganglion cells. J Neurosci 27:2636-45 [Journal] [PubMed]

Beaudoin DL, Manookin MB, Demb JB (2008) Distinct expressions of contrast gain control in parallel synaptic pathways converging on a retinal ganglion cell. J Physiol 586:5487-502 [Journal] [PubMed]

Benoit A,Caplier A,Durette B,Herault J (2010) Using human visual system modeling for bio-inspired low level image processing Comput. Vis. Image Underst. 114(7):758-773

Berry MJ, Brivanlou IH, Jordan TA, Meister M (1999) Anticipation of moving stimuli by the retina. Nature 398:334-8 [Journal] [PubMed]

Bower JM,Beeman D (2012) The Book of GENESIS: Exploring Realistic Neural Models with the General Neural Simulation System

Cajal SRY (1893) La retine des vertebres (Typ. Joseph van In & Cie., France)

Carandini M, Demb JB, Mante V, Tolhurst DJ, Dan Y, Olshausen BA, Gallant JL, Rust NC (2005) Do we know what the early visual system does? J Neurosci 25:10577-97 [Journal] [PubMed]

Carandini M, Heeger DJ (2011) Normalization as a canonical neural computation. Nat Rev Neurosci 13:51-62 [Journal] [PubMed]

Carandini M, Heeger DJ, Movshon JA (1997) Linearity and normalization in simple cells of the macaque primary visual cortex. J Neurosci 17:8621-44 [PubMed]

Carandini M, Heeger DJ, Senn W (2002) A synaptic explanation of suppression in visual cortex. J Neurosci 22:10053-65 [PubMed]

Chance FS, Nelson SB, Abbott LF (1998) Synaptic depression and the temporal response characteristics of V1 cells. J Neurosci 18:4785-99 [PubMed]

Chander D, Chichilnisky EJ (2001) Adaptation to temporal contrast in primate and salamander retina. J Neurosci 21:9904-16 [PubMed]

Clark DA, Benichou R, Meister M, Azeredo da Silveira R (2013) Dynamical adaptation in photoreceptors. PLoS Comput Biol 9:e1003289 [Journal] [PubMed]

Crook JD, Davenport CM, Peterson BB, Packer OS, Detwiler PB, Dacey DM (2009) Parallel ON and OFF cone bipolar inputs establish spatially coextensive receptive field structure of blue-yellow ganglion cells in primate retina. J Neurosci 29:8372-87 [Journal] [PubMed]

Da Silva Martins JC (2012) Computational models, neuronal metrics and system identification in bioelectronic vision PhD thesis Instituto Superior Tecnico - Universidade Tecinea de Lisbea

Dayan P, Abbott L (2003) Theoretical Neuroscience

De Valois RL, De Valois KK (1993) A multi-stage color model. Vision Res 33:1053-65 [PubMed]

Demb JB (2002) Multiple mechanisms for contrast adaptation in the retina. Neuron 36:781-3 [PubMed]

Demb JB (2008) Functional circuitry of visual adaptation in the retina. J Physiol 586:4377-84 [Journal] [PubMed]

Demb JB, Zaghloul K, Haarsma L, Sterling P (2001) Bipolar cells contribute to nonlinear spatial summation in the brisk-transient (Y) ganglion cell in mammalian retina. J Neurosci 21:7447-54 [PubMed]

Deriche R (1990) Fast algorithms for low-level vision IEEE Trans. Pattern Anal. Mach. Intell. 12(1):78-87

Deriche R (1993) Recursively implementating the gaussian and its derivatives Research Report (Inria- 00074778)

Druckmann S, Banitt Y, Gidon A, Schürmann F, Markram H, Segev I (2007) A novel multiple objective optimization framework for constraining conductance-based neuron models by experimental data. Front Neurosci 1:7-18 [Journal] [PubMed]

Dunn FA, Lankheet MJ, Rieke F (2007) Light adaptation in cone vision involves switching between receptor and post-receptor sites. Nature 449:603-6 [Journal] [PubMed]

Enroth-Cugell C, Robson JG (1966) The contrast sensitivity of retinal ganglion cells of the cat. J Physiol 187:517-52 [PubMed]

Estevez O (1979) On the fundamental data-base of normal and dichromatic colour vision PhD thesis, University of Amsterdam

Estevez O (1979) On the fundamental data-base of normal and dichromatic colour vision PhD thesis, University of Amsterdam

Gewaltig M-O, Diesmann M (2007) NEST (Neural Simulation Tool) Scholarpedia 2:1430

Ghosh-Dastidar S, Adeli H (2009) Spiking neural networks. Int J Neural Syst 19:295-308 [Journal] [PubMed]

Gollisch T, Meister M (2010) Eye smarter than scientists believed: neural computations in circuits of the retina. Neuron 65:150-64 [Journal] [PubMed]

Goodman DF, Brette R (2009) The brian simulator. Front Neurosci 3:192-7 [Journal] [PubMed]

Guo T, Tsai D, Bai S, Morley JW, Suaning GJ, Lovell NH, Dokos S (2014) Understanding the retina: a review of computational models of the retina from the single cell to the network level. Crit Rev Biomed Eng 42:419-36 [PubMed]

Harrison RR,Koch C (1999) An analog vlsi inplementation of a visual interneuron: Enhanced sensory processing through biophysical modeling Int. J. Neural Syst. 9(05):391-395

Herault J (1996) A model of colour processing in the retina of vertebrates: From photoreceptors to colour opposition and colour constancy phenomena Neurocomputing 12:113-129

Herault J, Durette B (2007) Modeling visual perception for image processing Computational and ambient intelligence : 9th international work-conference on artificial neural networks, IWANN 2007, Sandoval F:Prieto A:Cabestany J:Gra na M, ed. pp.662

Herz AV, Gollisch T, Machens CK, Jaeger D (2006) Modeling single-neuron dynamics and computations: a balance of detail and abstraction. Science 314:80-5 [Journal] [PubMed]

Hille B (2001) Ionic Channels of Excitable Membranes

Hines ML, Carnevale NT (1997) The NEURON simulation environment. Neural Comput 9:1179-209 [PubMed]

HODGKIN AL, HUXLEY AF (1952) A quantitative description of membrane current and its application to conduction and excitation in nerve. J Physiol 117:500-44 [Journal] [PubMed]

   Squid axon (Hodgkin, Huxley 1952) (LabAXON) [Model]
   Squid axon (Hodgkin, Huxley 1952) (NEURON) [Model]
   Squid axon (Hodgkin, Huxley 1952) (SNNAP) [Model]
   Squid axon (Hodgkin, Huxley 1952) used in (Chen et al 2010) (R language) [Model]
   Squid axon (Hodgkin, Huxley 1952) (SBML, XPP, other) [Model]

Kastner DB, Baccus SA (2011) Coordinated dynamic encoding in the retina using opposing forms of plasticity. Nat Neurosci 14:1317-22 [Journal] [PubMed]

Kim KJ, Rieke F (2001) Temporal contrast adaptation in the input and output signals of salamander retinal ganglion cells. J Neurosci 21:287-99 [PubMed]

Kim KJ, Rieke F (2003) Slow Na+ inactivation and variance adaptation in salamander retinal ganglion cells. J Neurosci 23:1506-16 [PubMed]

Lee BB, Dacey DM, Smith VC, Pokorny J (2003) Dynamics of sensitivity regulation in primate outer retina: the horizontal cell network. J Vis 3:513-26 [Journal] [PubMed]

Lee BB, Martin PR, Grünert U (2010) Retinal connectivity and primate vision. Prog Retin Eye Res 29:622-39 [Journal] [PubMed]

Lee BB, Shapley RM, Hawken MJ, Sun H (2012) Spatial distributions of cone inputs to cells of the parvocellular pathway investigated with cone-isolating gratings. J Opt Soc Am A Opt Image Sci Vis 29:A223-32 [Journal] [PubMed]

Li Z (1992) Different retinal ganglion cells have different functional goals Int. J. Neural Syst. 3(03):237-248

Manookin MB, Demb JB (2006) Presynaptic mechanism for slow contrast adaptation in mammalian retinal ganglion cells. Neuron 50:453-64 [Journal] [PubMed]

Mante V, Bonin V, Carandini M (2008) Functional mechanisms shaping lateral geniculate responses to artificial and natural stimuli. Neuron 58:625-38 [Journal] [PubMed]

Martinez-Canada P,Morillas C,Nieves JL,Pino B,Pelayo F (2015) First stage of a human visual system simulator: The retina Computational Color Imaging :118-127

Martinez-Canada P,Morillas C,Pino B,Pelayo F (2015) Towards a generic simulation tool of retina models Artificial Computation in Biology and Medicine :47-57

Martinez-Canada P,Morillas C,Romero S,Pelayo F (2015) Modeling retina adaptation with multiobjective parameter fitting Advances in Comput. Intell. :175-184

Morillas CA, Romero SF, Martínez A, Pelayo FJ, Ros E, Fernández E (2007) A design framework to model retinas. Biosystems 87:156-63 [Journal] [PubMed]

Olveczky BP, Baccus SA, Meister M (2003) Segregation of object and background motion in the retina. Nature 423:401-8 [Journal] [PubMed]

Olveczky BP, Baccus SA, Meister M (2007) Retinal adaptation to object motion. Neuron 56:689-700 [Journal] [PubMed]

Ozuysal Y, Baccus SA (2012) Linking the computational structure of variance adaptation to biophysical mechanisms. Neuron 73:1002-15 [Journal] [PubMed]

Packer OS, Dacey DM (2002) Receptive field structure of H1 horizontal cells in macaque monkey retina. J Vis 2:272-92 [Journal] [PubMed]

Purpura K, Tranchina D, Kaplan E, Shapley RM (1990) Light adaptation in the primate retina: analysis of changes in gain and dynamics of monkey retinal ganglion cells. Vis Neurosci 4:75-93 [PubMed]

Rieke F (2001) Temporal contrast adaptation in salamander bipolar cells. J Neurosci 21:9445-54 [PubMed]

Silver RA (2010) Neuronal arithmetic. Nat Rev Neurosci 11:474-89 [Journal] [PubMed]

Smith VC, Pokorny J, Lee BB, Dacey DM (2001) Primate horizontal cell dynamics: an analysis of sensitivity regulation in the outer retina. J Neurophysiol 85:545-58 [Journal] [PubMed]

Smith VC, Pokorny J, Lee BB, Dacey DM (2008) Sequential processing in vision: The interaction of sensitivity regulation and temporal dynamics. Vision Res 48:2649-56 [Journal] [PubMed]

Srinivas N,Deb K (1994) Multiobjective optimization using nondominated sorting in genetic algorithms Evol. Comput. 2(3):221-248

Sterratt D, Graham B, Gillies A, Willshaw D (2011) Principles of Computational Modelling in Neuroscience, Cambridge University Press :1-401 [Journal]

   Principles of Computational Modelling in Neuroscience (Book) (Sterratt et al. 2011) [Model]

Suh B, Baccus SA (2014) Building blocks of temporal filters in retinal synapses. PLoS Biol 12:e1001973 [Journal] [PubMed]

Tan S, Dale J, Johnston A (2003) Performance of three recursive algorithms for fast space-variant gaussian filtering Real-time Imaging 9:215-228

Torre V, Poggio T (1978) A synaptic mechanism possibly underlying directional selectivity to motion Proc Roy Soc Lond B 202:409-416

Tranchina D, Gordon J, Shapley RM (1984) Retinal light adaptation--evidence for a feedback mechanism. Nature 310:314-6 [PubMed]

Triggs B,Sdika M (2006) Boundary conditions for young-van vliet recursive filtering IEEE Trans. Signal Process 54(6):2365-2367

Tschumperle D (2012) The cimg library IPOL 2012 Meeting on Image Processing Libraries :1-4

Tsodyks M,Wu S (2013) Short-term synaptic plasticity Scholarpedia 8(10):3153

Van Geit W, De Schutter E, Achard P (2008) Automated neuron model optimization techniques: a review. Biol Cybern 99:241-51 [Journal] [PubMed]

van Hateren H (2005) A cellular and molecular model of response kinetics and adaptation in primate cones and horizontal cells. J Vis 5:331-47 [Journal] [PubMed]

van Hateren JH, Rüttiger L, Sun H, Lee BB (2002) Processing of natural temporal stimuli by macaque retinal ganglion cells. J Neurosci 22:9945-60 [PubMed]

Victor JD (1987) The dynamics of the cat retinal X cell centre. J Physiol 386:219-46 [PubMed]

Wohrer A, Kornprobst P (2009) Virtual Retina: a biological retina model and simulator, with contrast gain control. J Comput Neurosci 26:219-49 [Journal] [PubMed]

   Virtual Retina: biological retina simulator, with contrast gain control (Wohrer and Kornprobst 2009) [Model]

Young RA (1987) The Gaussian derivative model for spatial vision: I. Retinal mechanisms. Spat Vis 2:273-93 [PubMed]

Zaghloul KA, Boahen K (2004) Optic nerve signals in a neuromorphic chip I: Outer and inner retina models. IEEE Trans Biomed Eng 51:657-66 [PubMed]

Zaghloul KA, Boahen K, Demb JB (2003) Different circuits for ON and OFF retinal ganglion cells cause different contrast sensitivities. J Neurosci 23:2645-54 [PubMed]

Zaghloul KA, Boahen K, Demb JB (2005) Contrast adaptation in subthreshold and spiking responses of mammalian Y-type retinal ganglion cells. J Neurosci 25:860-8 [Journal] [PubMed]

Zucker RS, Regehr WG (2002) Short-term synaptic plasticity. Annu Rev Physiol 64:355-405 [Journal] [PubMed]

Martínez-Cañada P, Mobarhan MH, Halnes G, Fyhn M, Morillas C, Pelayo F, Einevoll GT (2018) Biophysical network modeling of the dLGN circuit: Effects of cortical feedback on spatial response properties of relay cells. PLoS Comput Biol 14:e1005930 [Journal] [PubMed]

   Cortical feedback alters visual response properties of dLGN relay cells (Martínez-Cañada et al 2018) [Model]

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