Citation Relationships



Hines ML, Carnevale NT (1997) The NEURON simulation environment. Neural Comput 9:1179-209 [PubMed]

References and models cited by this paper

References and models that cite this paper

Aberra AS, Peterchev AV, Grill WM (2018) Biophysically realistic neuron models for simulation of cortical stimulation. J Neural Eng 15:066023 [Journal] [PubMed]

   Biophysically realistic neuron models for simulation of cortical stimulation (Aberra et al. 2018) [Model]

Acker CD, Hoyos E, Loew LM (2016) EPSPs Measured in Proximal Dendritic Spines of Cortical Pyramidal Neurons. eNeuro [Journal] [PubMed]

Aguiar P, Sousa M, Lima D (2010) NMDA channels together with L-type calcium currents and calcium-activated nonspecific cationic currents are sufficient to generate windup in WDR neurons. J Neurophysiol 104:1155-66 [Journal] [PubMed]

   Mathematical model for windup (Aguiar et al. 2010) [Model]

Aguiar P, Willshaw D (2004) Hippocampal mossy fibre boutons as dynamical synapses Neurocomputing 58:699-703

Akemann W, Knöpfel T (2006) Interaction of Kv3 potassium channels and resurgent sodium current influences the rate of spontaneous firing of Purkinje neurons. J Neurosci 26:4602-12 [Journal] [PubMed]

   Cerebellar purkinje cell: interacting Kv3 and Na currents influence firing (Akemann, Knopfel 2006) [Model]

Akemann W, Lundby A, Mutoh H, Knöpfel T (2009) Effect of voltage sensitive fluorescent proteins on neuronal excitability. Biophys J 96:3959-76 [Journal] [PubMed]

   Effect of voltage sensitive fluorescent proteins on neuronal excitability (Akemann et al. 2009) [Model]

Alle H, Roth A, Geiger JR (2009) Energy-efficient action potentials in hippocampal mossy fibers. Science 325:1405-8 [Journal] [PubMed]

   Action potential reconstitution from measured current waveforms (Alle et al. 2009) [Model]

Allen JM, Elbasiouny SM (2018) The effects of model composition design choices on high-fidelity simulations of motoneuron recruitment and firing behaviors. J Neural Eng 15:036024 [Journal] [PubMed]

Allken V, Chepkoech JL, Einevoll GT, Halnes G (2014) The subcellular distribution of T-type Ca2+ channels in interneurons of the lateral geniculate nucleus. PLoS One 9:e107780 [Journal] [PubMed]

   The subcellular distribution of T-type Ca2+ channels in LGN interneurons (Allken et al. 2014) [Model]

Amir R, Devor M (2003) Electrical excitability of the soma of sensory neurons is required for spike invasion of the soma, but not for through-conduction. Biophys J 84:2181-91 [Journal] [PubMed]

   Dorsal root ganglion (DRG) neuronal model (Amir, Devor 2003) [Model]

Amir R, Kocsis JD, Devor M (2005) Multiple interacting sites of ectopic spike electrogenesis in primary sensory neurons. J Neurosci 25:2576-85 [Journal] [PubMed]

Amir R, Liu CN, Kocsis JD, Devor M (2002) Oscillatory mechanism in primary sensory neurones. Brain 125:421-35 [PubMed]

Anderson JC, Binzegger T, Kahana O, Martin KA, Segev I (1999) Dendritic asymmetry cannot account for directional responses of neurons in visual cortex. Nat Neurosci 2:820-4 [Journal] [PubMed]

   Visual Cortex Neurons: Dendritic study (Anderson et al 1999) [Model]

Anderson WS, Kudela P, Cho J, Bergey GK, Franaszczuk PJ (2007) Studies of stimulus parameters for seizure disruption using neural network simulations. Biol Cybern 97:173-94 [Journal] [PubMed]

   Network model with neocortical architecture (Anderson et al 2007,2012; Azhar et al 2012) [Model]
   Studies of stimulus parameters for seizure disruption using NN simulations (Anderson et al. 2007) [Model]

Angelo K, London M, Christensen SR, Häusser M (2007) Local and global effects of I(h) distribution in dendrites of mammalian neurons. J Neurosci 27:8643-53 [Journal] [PubMed]

Anwar H, Roome CJ, Nedelescu H, Chen W, Kuhn B, De Schutter E (2014) Dendritic diameters affect the spatial variability of intracellular calcium dynamics in computer models. Front Cell Neurosci 8:168 [Journal] [PubMed]

   Calcium dynamics depend on dendritic diameters (Anwar et al. 2014) [Model]

Appukuttan S, Brain KL, Manchanda R (2015) A computational model of urinary bladder smooth muscle syncytium : validation and investigation of electrical properties. J Comput Neurosci 38:167-87 [Journal] [PubMed]

Appukuttan S, Brain KL, Manchanda R (2017) Modeling extracellular fields for a three-dimensional network of cells using NEURON. J Neurosci Methods 290:27-38 [Journal] [PubMed]

   Extracellular fields for a three-dimensional network of cells using NEURON (Appukuttan et al 2017) [Model]

Aradi I, Santhakumar V, Chen K, Soltesz I (2002) Postsynaptic effects of GABAergic synaptic diversity: regulation of neuronal excitability by changes in IPSC variance. Neuropharmacology 43:511-22 [PubMed]

Aradi I, Santhakumar V, Soltesz I (2004) Impact of heterogeneous perisomatic IPSC populations on pyramidal cell firing rates. J Neurophysiol 91:2849-58 [Journal] [PubMed]

Aradi I, Soltesz I (2002) Modulation of network behaviour by changes in variance in interneuronal properties. J Physiol 538:227-51 [PubMed]

Archie KA, Mel BW (2000) A model for intradendritic computation of binocular disparity. Nat Neurosci 3:54-63 [Journal] [PubMed]

   Visual Cortex Neurons: Dendritic computations (Archie, Mel 2000) [Model]

Ariav G, Polsky A, Schiller J (2003) Submillisecond precision of the input-output transformation function mediated by fast sodium dendritic spikes in basal dendrites of CA1 pyramidal neurons. J Neurosci 23:7750-8 [PubMed]

Arkhipov A, Gouwens NW, Billeh YN, Gratiy S, Iyer R, Wei Z, Xu Z, Abbasi-Asl R, Berg J, Buice M, Cain N, da Costa N, de Vries S, Denman D, Durand S, Feng D, Jarsky T, Lecoq J, Lee B, Li L, Mihalas S, Ocker GK, Olsen SR, Reid RC, Soler-Llavina G, Sorensen SA, Wang Q, Waters J, Scanziani M, Koch C (2018) Visual physiology of the layer 4 cortical circuit in silico. PLoS Comput Biol 14:e1006535 [Journal] [PubMed]

   Visual physiology of the layer 4 cortical circuit in silico (Arkhipov et al 2018) [Model]

Avella Gonzalez OJ, Mansvelder HD, van Pelt J, van Ooyen A (2015) H-Channels Affect Frequency, Power and Amplitude Fluctuations of Neuronal Network Oscillations. Front Comput Neurosci 9:141 [Journal] [PubMed]

   H-currents effect on the fluctuation of gamma/beta oscillations (Avella-Gonzalez et al., 2015) [Model]

Avella Gonzalez OJ, van Aerde KI, Mansvelder HD, van Pelt J, van Ooyen A (2014) Inter-network interactions: impact of connections between oscillatory neuronal networks on oscillation frequency and pattern. PLoS One 9:e100899 [Journal] [PubMed]

   A two networks model of connectivity-dependent oscillatory activity (Avella OJ et al. 2014) [Model]

Avella Gonzalez OJ, van Aerde KI, van Elburg RA, Poil SS, Mansvelder HD, Linkenkaer-Hansen K, van Pelt J, van Ooyen A (2012) External drive to inhibitory cells induces alternating episodes of high- and low-amplitude oscillations. PLoS Comput Biol 8:e1002666 [Journal] [PubMed]

   Single E-I oscillating network with amplitude modulation (Avella Gonzalez et al. 2012) [Model]

Badoual M, Zou Q, Davison AP, Rudolph M, Bal T, Frégnac Y, Destexhe A (2006) Biophysical and phenomenological models of multiple spike interactions in spike-timing dependent plasticity. Int J Neural Syst 16:79-97 [Journal] [PubMed]

   Biophysical and phenomenological models of spike-timing dependent plasticity (Badoual et al. 2006) [Model]

Bahmer A, Langner G (2010) Parameters for a model of an oscillating neuronal network in the cochlear nucleus defined by genetic algorithms. Biol Cybern 102:81-93 [Journal] [PubMed]

   Oscillating neurons in the cochlear nucleus (Bahmer Langner 2006a, b, and 2007) [Model]

Banitt Y, Martin KA, Segev I (2007) A biologically realistic model of contrast invariant orientation tuning by thalamocortical synaptic depression. J Neurosci 27:10230-9 [Journal] [PubMed]

   Contrast invariance by LGN synaptic depression (Banitt et al. 2007) [Model]

Bar-Yehuda D, Korngreen A (2008) Space-clamp problems when voltage clamping neurons expressing voltage-gated conductances. J Neurophysiol 99:1127-36 [Journal] [PubMed]

   Space clamp problems in neurons with voltage-gated conductances (Bar-Yehuda and Korngreen 2008) [Model]

Barela AJ, Waddy SP, Lickfett JG, Hunter J, Anido A, Helmers SL, Goldin AL, Escayg A (2006) An epilepsy mutation in the sodium channel SCN1A that decreases channel excitability. J Neurosci 26:2714-23 [Journal] [PubMed]

   Sodium channel mutations causing generalized epilepsy with febrile seizures + (Barela et al. 2006) [Model]

Bartos M, Vida I, Frotscher M, Geiger JR, Jonas P (2001) Rapid signaling at inhibitory synapses in a dentate gyrus interneuron network. J Neurosci 21:2687-98 [PubMed]

   Dentate Basket Cell: spatial summation of inhibitory synaptic inputs (Bartos et al 2001) [Model]

Bartos M, Vida I, Frotscher M, Meyer A, Monyer H, Geiger JR, Jonas P (2002) Fast synaptic inhibition promotes synchronized gamma oscillations in hippocampal interneuron networks. Proc Natl Acad Sci U S A 99:13222-7 [Journal] [PubMed]

   Gamma oscillations in hippocampal interneuron networks (Bartos et al 2002) [Model]

Bédard C, Béhuret S, Deleuze C, Bal T, Destexhe A (2012) Oversampling method to extract excitatory and inhibitory conductances from single-trial membrane potential recordings. J Neurosci Methods 210:3-14 [Journal] [PubMed]

   Oversampling method to extract excitatory and inhibitory conductances (Bedard et al. 2012) [Model]

Bédard C, Destexhe A (2008) A modified cable formalism for modeling neuronal membranes at high frequencies. Biophys J 94:1133-43 [Journal] [PubMed]

Bédard C, Kröger H, Destexhe A (2004) Modeling extracellular field potentials and the frequency-filtering properties of extracellular space. Biophys J 86:1829-42 [Journal] [PubMed]

   Modeling local field potentials (Bedard et al. 2004) [Model]

Bednar JA, Kelkar A, Miikkulainen R (2004) Scaling self-organizing maps to model large cortical networks. Neuroinformatics 2:275-302 [Journal] [PubMed]

   Scaling self-organizing maps to model large cortical networks (Bednar et al 2004) [Model]

Behabadi BF, Mel BW (2007) J4 at sweet 16: a new wrinkle? Neural Comput 19:2865-70 [Journal] [PubMed]

Behuret S, Deleuze C, Gomez L, Fregnac Y, Bal T (2013) Cortically-controlled population stochastic facilitation as a plausible substrate for guiding sensory transfer across the thalamic gateway PLoS Computational Biology 9(12):e1003401 [Journal] [PubMed]

   A Model Circuit of Thalamocortical Convergence (Behuret et al. 2013) [Model]

Bellinger SC, Miyazawa G, Steinmetz PN (2008) Submyelin potassium accumulation may functionally block subsets of local axons during deep brain stimulation: a modeling study. J Neural Eng 5:263-74 [Journal] [PubMed]

   Submyelin Potassium accumulation in Subthalamic neuron (STN) axons (Bellinger et al. 2008) [Model]

Berends M, Maex R, De Schutter E (2005) The effect of NMDA receptors on gain modulation. Neural Comput 17:2531-47 [Journal] [PubMed]

Bessaïh T, Leresche N, Lambert RC (2008) T current potentiation increases the occurrence and temporal fidelity of synaptically evoked burst firing in sensory thalamic neurons. Proc Natl Acad Sci U S A 105:11376-81 [Journal] [PubMed]

Bhadra N, Lahowetz EA, Foldes ST, Kilgore KL (2007) Simulation of high-frequency sinusoidal electrical block of mammalian myelinated axons. J Comput Neurosci 22:313-26 [Journal] [PubMed]

Bianchi D, De Michele P, Marchetti C, Tirozzi B, Cuomo S, Marie H, Migliore M (2014) Effects of increasing CREB-dependent transcription on the storage and recall processes in a hippocampal CA1 microcircuit. Hippocampus 24:165-77 [Journal] [PubMed]

   Effects of increasing CREB on storage and recall processes in a CA1 network (Bianchi et al. 2014) [Model]

Bird AD, Cuntz H (2016) Optimal Current Transfer in Dendrites. PLoS Comput Biol 12:e1004897 [Journal] [PubMed]

Birdno MJ, Cooper SE, Rezai AR, Grill WM (2007) Pulse-to-pulse changes in the frequency of deep brain stimulation affect tremor and modeled neuronal activity. J Neurophysiol 98:1675-84 [Journal] [PubMed]

Birdno MJ, Kuncel AM, Dorval AD, Turner DA, Gross RE, Grill WM (2012) Stimulus features underlying reduced tremor suppression with temporally patterned deep brain stimulation. J Neurophysiol 107:364-83 [Journal] [PubMed]

   Thalamic network model of deep brain stimulation in essential tremor (Birdno et al. 2012) [Model]

Bloss EB, Cembrowski MS, Karsh B, Colonell J, Fetter RD, Spruston N (2016) Structured Dendritic Inhibition Supports Branch-Selective Integration in CA1 Pyramidal Cells. Neuron 89:1016-30 [Journal] [PubMed]

   CA1 pyramidal neuron synaptic integration (Bloss et al. 2016) [Model]

Bloss EB, Cembrowski MS, Karsh B, Colonell J, Fetter RD, Spruston N (2018) Single excitatory axons form clustered synapses onto CA1 pyramidal cell dendrites. Nat Neurosci 21:353-363 [Journal] [PubMed]

   Single excitatory axons form clustered synapses onto CA1 pyramidal cell dendrites (Bloss et al 2018) [Model]

Booth V, Poe GR (2006) Input source and strength influences overall firing phase of model hippocampal CA1 pyramidal cells during theta: relevance to REM sleep reactivation and memory consolidation. Hippocampus 16:161-73 [Journal] [PubMed]

Borg-Graham LJ (2000) Additional efficient computation of branched nerve equations: adaptive time step and ideal voltage clamp. J Comput Neurosci 8:209-26 [PubMed]

Bossetti CA, Birdno MJ, Grill WM (2008) Analysis of the quasi-static approximation for calculating potentials generated by neural stimulation. J Neural Eng 5:44-53 [Journal] [PubMed]

Branco T, Häusser M (2011) Synaptic integration gradients in single cortical pyramidal cell dendrites. Neuron 69:885-92 [Journal] [PubMed]

   Dendritic Discrimination of Temporal Input Sequences (Branco et al. 2010) [Model]

Bras H, Lahjouji F, Korogod SM, Kulagina IB, Barbe A (2003) Heterogeneous synaptic covering and differential charge transfer sensitivity among the dendrites of a reconstructed abducens motor neurone: correlations between electron microscopic and computer simulation data. J Neurocytol 32:5-24 [PubMed]

Brecht M, Roth A, Sakmann B (2003) Dynamic receptive fields of reconstructed pyramidal cells in layers 3 and 2 of rat somatosensory barrel cortex. J Physiol 553:243-65 [Journal] [PubMed]

Brecht M, Sakmann B (2002) Dynamic representation of whisker deflection by synaptic potentials in spiny stellate and pyramidal cells in the barrels and septa of layer 4 rat somatosensory cortex. J Physiol 543:49-70 [PubMed]

Breen BJ, Gerken WC, Butera RJ (2003) Hybrid integrate-and-fire model of a bursting neuron. Neural Comput 15:2843-62 [Journal] [PubMed]

Brette R, Gerstner W (2005) Adaptive exponential integrate-and-fire model as an effective description of neuronal activity. J Neurophysiol 94:3637-42 [Journal] [PubMed]

   Adaptive exponential integrate-and-fire model (Brette & Gerstner 2005) [Model]

Brette R, Piwkowska Z, Monier C, Rudolph-Lilith M, Fournier J, Levy M, Frégnac Y, Bal T, Destexhe A (2008) High-resolution intracellular recordings using a real-time computational model of the electrode. Neuron 59:379-91 [Journal] [PubMed]

   High-Res. Recordings Using a Real-Time Computational Model of the Electrode (Brette et al. 2008) [Model]

Brette R, Rudolph M, Carnevale T, Hines M, Beeman D, Bower JM, Diesmann M, Morrison A, Goodman PH, Harris FC, Zirpe M, Natschläger T, Pecevski D, Ermentrout B, Djurfeldt M, Lansner A, Rochel O, Vieville T, Muller E, Davison AP, El Boustani S, Destexhe A (2007) Simulation of networks of spiking neurons: a review of tools and strategies. J Comput Neurosci 23:349-98 [Journal] [PubMed]

   Networks of spiking neurons: a review of tools and strategies (Brette et al. 2007) [Model]
   Thalamocortical Relay cell under current clamp in high-conductance state (Zeldenrust et al 2018) [Model]

Broser PJ, Schulte R, Lang S, Roth A, Helmchen F, Waters J, Sakmann B, Wittum G (2004) Nonlinear anisotropic diffusion filtering of three-dimensional image data from two-photon microscopy. J Biomed Opt 9:1253-64 [Journal] [PubMed]

Brown SA, Moraru II, Schaff JC, Loew LM (2011) Virtual NEURON: a strategy for merged biochemical and electrophysiological modeling. J Comput Neurosci 31:385-400 [Journal] [PubMed]

   A simplified cerebellar Purkinje neuron (the PPR model) (Brown et al. 2011) [Model]

Budd JM (2005) Theta oscillations by synaptic excitation in a neocortical circuit model. Proc Biol Sci 272:101-9 [Journal] [PubMed]

Bush PC, Prince DA, Miller KD (1999) Increased pyramidal excitability and NMDA conductance can explain posttraumatic epileptogenesis without disinhibition: a model. J Neurophysiol 82:1748-58 [Journal] [PubMed]

   Cortical network model of posttraumatic epileptogenesis (Bush et al 1999) [Model]

Butson CR, Maks CB, McIntyre CC (2006) Sources and effects of electrode impedance during deep brain stimulation. Clin Neurophysiol 117:447-54 [Journal] [PubMed]

Butson CR, McIntyre CC (2006) Role of electrode design on the volume of tissue activated during deep brain stimulation. J Neural Eng 3:1-8 [Journal] [PubMed]

Calin-Jageman RJ, Katz PS (2006) A distributed computing tool for generating neural simulation databases. Neural Comput 18:2923-7 [Journal] [PubMed]

   Distributed computing tool for NEURON, NEURONPM (screensaver) (Calin-Jageman and Katz 2006) [Model]

Calin-Jageman RJ, Tunstall MJ, Mensh BD, Katz PS, Frost WN (2007) Parameter space analysis suggests multi-site plasticity contributes to motor pattern initiation in Tritonia. J Neurophysiol 98:2382-98 [Journal] [PubMed]

   Updated Tritonia Swim CPG (Calin-Jagemann et al. 2007) [Model]

Camuñas-Mesa LA, Quiroga RQ (2013) A detailed and fast model of extracellular recordings. Neural Comput 25:1191-212 [Journal] [PubMed]

   A detailed and fast model of extracellular recordings (Camunas-Mesa & Qurioga 2013) [Model]

Cannon RC, O'Donnell C, Nolan MF (2010) Stochastic ion channel gating in dendritic neurons: morphology dependence and probabilistic synaptic activation of dendritic spikes. PLoS Comput Biol [Journal] [PubMed]

   Stochastic ion channels and neuronal morphology (Cannon et al. 2010) [Model]

Capurro A, Diambra L, Malta CP (2003) Model for the heart beat-to-beat timeseries during meditation Physica A 327:168-173

Carlin KP, Jones KE, Jiang Z, Jordan LM, Brownstone RM (2000) Dendritic L-type calcium currents in mouse spinal motoneurons: implications for bistability. Eur J Neurosci 12:1635-46 [PubMed]

   Dendritic L-type Ca currents in motoneurons (Carlin et al 2000) [Model]

Carrillo RR, Ros E, Barbour B, Boucheny C, Coenen O (2007) Event-driven simulation of neural population synchronization facilitated by electrical coupling. Biosystems 87:275-80 [Journal] [PubMed]

Carrillo RR, Ros E, Tolu S, Nieus T, D'Angelo E (2008) Event-driven simulation of cerebellar granule cells. Biosystems 94:10-7 [Journal] [PubMed]

Carvalho TP, Buonomano DV (2009) Differential effects of excitatory and inhibitory plasticity on synaptically driven neuronal input-output functions. Neuron 61:774-85 [Journal] [PubMed]

   Balance of excitation and inhibition (Carvalho and Buonomano 2009) [Model]

Casaleggio A, Hines ML, Migliore M (2014) Computational model of erratic arrhythmias in a cardiac cell network: the role of gap junctions. PLoS One 9:e100288 [Journal] [PubMed]

   Model of arrhythmias in a cardiac cells network (Casaleggio et al. 2014) [Model]

Cassarà AM, Hagberg GE, Bianciardi M, Migliore M, Maraviglia B (2008) Realistic simulations of neuronal activity: a contribution to the debate on direct detection of neuronal currents by MRI. Neuroimage 39:87-106 [Journal] [PubMed]

   CA1 pyramidal neuron: calculation of MRI signals (Cassara et al. 2008) [Model]

Cassarà AM, Maraviglia B (2008) Microscopic investigation of the resonant mechanism for the implementation of nc-MRI at ultra-low field MRI. Neuroimage 41:1228-41 [Journal] [PubMed]

   CA1 pyramidal neuron: calculation of MRI signals (Cassara et al. 2008) [Model]

Castelfranco AM, Hartline DK (2004) Corrections for space-clamp errors in measured parameters of voltage-dependent conductances in a cylindrical neurite. Biol Cybern 90:280-90 [Journal] [PubMed]

Cataldi M, Lariccia V, Marzaioli V, Cavaccini A, Curia G, Viggiano D, Canzoniero LM, di Renzo G, Avoli M, Annunziato L (2007) Zn(2+) slows down Ca(V)3.3 gating kinetics: implications for thalamocortical activity. J Neurophysiol 98:2274-84 [Journal] [PubMed]

Cathala L, Brickley S, Cull-Candy S, Farrant M (2003) Maturation of EPSCs and intrinsic membrane properties enhances precision at a cerebellar synapse. J Neurosci 23:6074-85 [PubMed]

Cavarretta F, Carnevale NT, Tegolo D, Migliore M (2014) Effects of low frequency electric fields on synaptic integration in hippocampal CA1 pyramidal neurons: implications for power line emissions. Front Cell Neurosci 8:310 [Journal] [PubMed]

   CA1 pyramidal neurons: effect of external electric field from power lines (Cavarretta et al. 2014) [Model]

Cavarretta F, Marasco A, Hines ML, Shepherd GM, Migliore M (2016) Glomerular and Mitral-Granule Cell Microcircuits Coordinate Temporal and Spatial Information Processing in the Olfactory Bulb. Front Comput Neurosci 10:67 [Journal] [PubMed]

   Parallel odor processing by mitral and middle tufted cells in the OB (Cavarretta et al 2016, 2018) [Model]

Chan CS, Shigemoto R, Mercer JN, Surmeier DJ (2004) HCN2 and HCN1 channels govern the regularity of autonomous pacemaking and synaptic resetting in globus pallidus neurons. J Neurosci 24:9921-32 [Journal] [PubMed]

Chemin J, Monteil A, Bourinet E, Nargeot J, Lory P (2001) Alternatively spliced alpha(1G) (Ca(V)3.1) intracellular loops promote specific T-type Ca(2+) channel gating properties. Biophys J 80:1238-50 [Journal] [PubMed]

Chemin J, Monteil A, Perez-Reyes E, Bourinet E, Nargeot J, Lory P (2002) Specific contribution of human T-type calcium channel isotypes (alpha(1G), alpha(1H) and alpha(1I)) to neuronal excitability. J Physiol 540:3-14 [Journal] [PubMed]

Chemin J, Monteil A, Perez-Reyes E, Nargeot J, Lory P (2001) Direct inhibition of T-type calcium channels by the endogenous cannabinoid anandamide. EMBO J 20:7033-40 [Journal] [PubMed]

Chen E, Stiefel KM, Sejnowski TJ, Bullock TH (2008) Model of traveling waves in a coral nerve network. J Comp Physiol A Neuroethol Sens Neural Behav Physiol 194:195-200 [Journal] [PubMed]

Chen N, Li B, Murphy TH, Raymond LA (2004) Site within N-Methyl-D-aspartate receptor pore modulates channel gating. Mol Pharmacol 65:157-64 [Journal] [PubMed]

Chen N, Ren J, Raymond LA, Murphy TH (2001) Changes in agonist concentration dependence that are a function of duration of exposure suggest N-methyl-D-aspartate receptor nonsaturation during synaptic stimulation. Mol Pharmacol 59:212-9 [Journal] [PubMed]

   NMDA receptor saturation (Chen et al 2001) [Model]

Chen WR, Shen GY, Shepherd GM, Hines ML, Midtgaard J (2002) Multiple modes of action potential initiation and propagation in mitral cell primary dendrite. J Neurophysiol 88:2755-64 [Journal] [PubMed]

   Olfactory Mitral cell: AP initiation modes (Chen et al 2002) [Model]

Chen X, Shu S, Kennedy DP, Willcox SC, Bayliss DA (2009) Subunit-specific effects of isoflurane on neuronal Ih in HCN1 knockout mice. J Neurophysiol 101:129-40 [Journal] [PubMed]

Chitwood RA, Hubbard A, Jaffe DB (1999) Passive electrotonic properties of rat hippocampal CA3 interneurones. J Physiol 515 ( Pt 3):743-56 [PubMed]

Chiu CQ, Lur G, Morse TM, Carnevale NT, Ellis-Davies GC, Higley MJ (2013) Compartmentalization of GABAergic inhibition by dendritic spines. Science 340:759-62 [Journal] [PubMed]

   Compartmentalization of GABAergic inhibition by dendritic spines (Chiu et al. 2013) [Model]

Chono K, Takagi H, Koyama S, Suzuki H, Ito E (2003) A cell model study of calcium influx mechanism regulated by calcium-dependent potassium channels in Purkinje cell dendrites. J Neurosci Methods 129:115-27 [PubMed]

Christensen TA, D'Alessandro G, Lega J, Hildebrand JG (2001) Morphometric modeling of olfactory circuits in the insect antennal lobe: I. Simulations of spiking local interneurons. Biosystems 61:143-53 [PubMed]

Cleland TA, Sethupathy P (2006) Non-topographical contrast enhancement in the olfactory bulb. BMC Neurosci 7:7 [Journal] [PubMed]

Coggan JS, Prescott SA, Bartol TM, Sejnowski TJ (2010) Imbalance of ionic conductances contributes to diverse symptoms of demyelination. Proc Natl Acad Sci U S A 107:20602-9 [Journal] [PubMed]

Cohen A, Shappir J, Yitzchaik S, Spira ME (2006) Experimental and theoretical analysis of neuron-transistor hybrid electrical coupling: the relationships between the electro-anatomy of cultured Aplysia neurons and the recorded field potentials. Biosens Bioelectron 22:656-63 [Journal] [PubMed]

Cohen MX (2014) Fluctuations in oscillation frequency control spike timing and coordinate neural networks. J Neurosci 34:8988-98 [Journal] [PubMed]

   Input strength and time-varying oscillation peak frequency (Cohen MX 2014) [Model]

Conde-Sousa E, Aguiar P (2013) A working memory model for serial order that stores information in the intrinsic excitability properties of neurons. J Comput Neurosci 35:187-99 [Journal] [PubMed]

   Storing serial order in intrinsic excitability: a working memory model (Conde-Sousa & Aguiar 2013) [Model]

Crane GJ, Hines ML, Neild TO (2001) Simulating the spread of membrane potential changes in arteriolar networks. Microcirculation 8:33-43 [PubMed]

   Arteriolar networks: Spread of potential (Crane et al 2001) [Model]

Crone JC, Vindiola MM, Yu AB, Boothe DL, Beeman D, Oie KS, Franaszczuk PJ (2019) Enabling Large-Scale Simulations With the GENESIS Neuronal Simulator Frontiers in Neuroinformatics 13:69 [Journal]

   ACnet23 primary auditory cortex model (Beeman et al 2019) [Model]
   Large scale neocortical model for PGENESIS (Crone et al 2019) [Model]

Crotty P, Levy WB (2006) Intersymbol interference in axonal transmission Neurocomputing 69:1006-1009 [Journal]

Crotty P, Sangrey T, Levy WB (2006) Metabolic energy cost of action potential velocity. J Neurophysiol 96:1237-46 [Journal] [PubMed]

Culmone V, Migliore M (2012) Progressive effect of beta amyloid peptides accumulation on CA1 pyramidal neurons: a model study suggesting possible treatments. Front Comput Neurosci 6:52 [Journal] [PubMed]

   CA1 pyramidal neurons: effects of Alzheimer (Culmone and Migliore 2012) [Model]

Cuntz H, Haag J, Borst A (2003) Neural image processing by dendritic networks. Proc Natl Acad Sci U S A 100:11082-5 [Journal] [PubMed]

Cuntz H, Haag J, Forstner F, Segev I, Borst A (2007) Robust coding of flow-field parameters by axo-axonal gap junctions between fly visual interneurons. Proc Natl Acad Sci U S A 104:10229-33 [Journal] [PubMed]

Cutsuridis V, Cobb S, Graham BP (2010) Encoding and retrieval in a model of the hippocampal CA1 microcircuit. Hippocampus 20:423-46 [Journal] [PubMed]

   Encoding and retrieval in a model of the hippocampal CA1 microcircuit (Cutsuridis et al. 2009) [Model]

Cutsuridis V, Poirazi P (2015) A computational study on how theta modulated inhibition can account for the long temporal windows in the entorhinal-hippocampal loop. Neurobiol Learn Mem 120:69-83 [Journal] [PubMed]

   Long time windows from theta modulated inhib. in entorhinal–hippo. loop (Cutsuridis & Poirazi 2015) [Model]

D'Angelo E, Nieus T, Maffei A, Armano S, Rossi P, Taglietti V, Fontana A, Naldi G (2001) Theta-frequency bursting and resonance in cerebellar granule cells: experimental evidence and modeling of a slow k+-dependent mechanism. J Neurosci 21:759-70 [PubMed]

   Bursting and resonance in cerebellar granule cells (D'Angelo et al. 2001) [Model]

Davison A (2004) Biologically-detailed network modelling (Chapter 10) Computation Neuroscience: A Comprehensive Approach, Feng J, ed. pp.287

Davison AP, Feng J, Brown D (2003) Dendrodendritic inhibition and simulated odor responses in a detailed olfactory bulb network model. J Neurophysiol 90:1921-35 [Journal] [PubMed]

   Olfactory Bulb Network (Davison et al 2003) [Model]

Debay D, Wolfart J, Le Franc Y, Le Masson G, Bal T (2004) Exploring spike transfer through the thalamus using hybrid artificial-biological neuronal networks. J Physiol Paris 98:540-58 [Journal] [PubMed]

Desjardins AE, Li YX, Reinker S, Miura RM, Neuman RS (2003) The influences of Ih on temporal summation in hippocampal CA1 pyramidal neurons: a modeling study. J Comput Neurosci 15:131-42 [PubMed]

Destexhe A (1998) Spike-and-wave oscillations based on the properties of GABAB receptors. J Neurosci 18:9099-111 [PubMed]

Destexhe A (1999) Can GABAA conductances explain the fast oscillation frequency of absence seizures in rodents? Eur J Neurosci 11:2175-81 [PubMed]

Destexhe A (2000) Modelling corticothalamic feedback and the gating of the thalamus by the cerebral cortex. J Physiol Paris 94:391-410 [PubMed]

Destexhe A (2009) Self-sustained asynchronous irregular states and Up-Down states in thalamic, cortical and thalamocortical networks of nonlinear integrate-and-fire neurons. J Comput Neurosci 27:493-506 [Journal] [PubMed]

   Asynchronous irregular and up/down states in excitatory and inhibitory NNs (Destexhe 2009) [Model]

Destexhe A, Badoual M, Piwkowska Z, Bal T, Rudolph M (2004) A novel method for characterizing synaptic noise in cortical neurons Neurocomputing 58:191-196

Destexhe A, Contreras D, Steriade M (1998) Mechanisms underlying the synchronizing action of corticothalamic feedback through inhibition of thalamic relay cells. J Neurophysiol 79:999-1016 [Journal] [PubMed]

   Pyramidal Neuron: Deep, Thalamic Relay and Reticular, Interneuron (Destexhe et al 1998, 2001) [Model]

Destexhe A, Contreras D, Steriade M (1999) Cortically-induced coherence of a thalamic-generated oscillation. Neuroscience 92:427-43 [PubMed]

Destexhe A, Huguenard JR (2000) Nonlinear thermodynamic models of voltage-dependent currents. J Comput Neurosci 9:259-70 [PubMed]

Destexhe A, Neubig M, Ulrich D, Huguenard J (1998) Dendritic low-threshold calcium currents in thalamic relay cells. J Neurosci 18:3574-88 [Journal] [PubMed]

   Low Threshold Calcium Currents in TC cells (Destexhe et al 1998) [Model]
   Low Threshold Calcium Currents in TC cells (Destexhe et al 1998) (Brian) [Model]
   Thalamocortical Relay cell under current clamp in high-conductance state (Zeldenrust et al 2018) [Model]

Destexhe A, Rudolph M (2004) Extracting information from the power spectrum of synaptic noise. J Comput Neurosci 17:327-45 [Journal] [PubMed]

Destexhe A, Rudolph M (2005) Extracting information from the power spectrum of voltage noise Neurocomputing 65:901-906 [Journal]

Destexhe A, Rudolph M, Fellous JM, Sejnowski TJ (2001) Fluctuating synaptic conductances recreate in vivo-like activity in neocortical neurons. Neuroscience 107:13-24 [PubMed]

   Fluctuating synaptic conductances recreate in-vivo-like activity (Destexhe et al 2001) [Model]
   Thalamocortical Relay cell under current clamp in high-conductance state (Zeldenrust et al 2018) [Model]

Destexhe A, Rudolph M, Paré D (2003) The high-conductance state of neocortical neurons in vivo. Nat Rev Neurosci 4:739-51 [Journal] [PubMed]

Destexhe A, Sejnowski TJ (2002) The initiation of bursts in thalamic neurons and the cortical control of thalamic sensitivity. Philos Trans R Soc Lond B Biol Sci 357:1649-57 [Journal] [PubMed]

Destexhe A, Sejnowski TJ (2003) Interactions between membrane conductances underlying thalamocortical slow-wave oscillations. Physiol Rev 83:1401-53 [Journal] [PubMed]

Devaux J, Gow A (2008) Tight junctions potentiate the insulative properties of small CNS myelinated axons. J Cell Biol 183:909-21 [Journal] [PubMed]

   Tight junction model of CNS myelinated axons (Devaux and Gow 2008) [Model]

Devor A, Yarom Y (2002) Electrotonic coupling in the inferior olivary nucleus revealed by simultaneous double patch recordings. J Neurophysiol 87:3048-58 [Journal] [PubMed]

Diba K, Koch C, Segev I (2006) Spike propagation in dendrites with stochastic ion channels. J Comput Neurosci 20:77-84 [Journal] [PubMed]

   Spike propagation in dendrites with stochastic ion channels (Diba et al. 2006) [Model]

Dietz M, Wang L, Greenberg D, McAlpine D (2016) Sensitivity to Interaural Time Differences Conveyed in the Stimulus Envelope: Estimating Inputs of Binaural Neurons Through the Temporal Analysis of Spike Trains. J Assoc Res Otolaryngol 17:313-30 [Journal] [PubMed]

DiGregorio DA, Nusser Z, Silver RA (2002) Spillover of glutamate onto synaptic AMPA receptors enhances fast transmission at a cerebellar synapse. Neuron 35:521-33 [PubMed]

Diwakar S, Lombardo P, Solinas S, Naldi G, D'Angelo E (2011) Local field potential modeling predicts dense activation in cerebellar granule cells clusters under LTP and LTD control. PLoS One 6:e21928 [Journal] [PubMed]

   Reconstructing cerebellar granule layer evoked LFP using convolution (ReConv) (Diwakar et al. 2011) [Model]

Doiron B, Longtin A, Berman N, Maler L (2001) Subtractive and divisive inhibition: effect of voltage-dependent inhibitory conductances and noise. Neural Comput 13:227-48 [PubMed]

Doiron B, Longtin A, Turner RW, Maler L (2001) Model of gamma frequency burst discharge generated by conditional backpropagation. J Neurophysiol 86:1523-45 [Journal] [PubMed]

Doiron B, Noonan L, Lemon N, Turner RW (2003) Persistent Na+ current modifies burst discharge by regulating conditional backpropagation of dendritic spikes. J Neurophysiol 89:324-37 [Journal] [PubMed]

Doischer D, Hosp JA, Yanagawa Y, Obata K, Jonas P, Vida I, Bartos M (2008) Postnatal differentiation of basket cells from slow to fast signaling devices. J Neurosci 28:12956-68 [Journal] [PubMed]

Dougalis AG, Matthews GAC, Liss B, Ungless MA (2017) Ionic currents influencing spontaneous firing and pacemaker frequency in dopamine neurons of the ventrolateral periaqueductal gray and dorsal raphe nucleus (vlPAG/DRN): A voltage-clamp and computational modelling study. J Comput Neurosci 42:275-305 [Journal] [PubMed]

   Dopamine neuron of the vent. periaqu. gray and dors. raphe nucleus (vlPAG/DRN) (Dougalis et al 2017) [Model]

Du JL, Yang XL (2002) Glycinergic synaptic transmission to bullfrog retinal bipolar cells is input-specific. Neuroscience 113:779-84 [PubMed]

Duijnhouwer J, Remme MWH, Ooyen VANA, Pelt VANJ (2001) Influence of dendritic topology on firing patterns in model neurons Neurocomputing 38:183-189

Durstewitz D, Gabriel T (2007) Dynamical basis of irregular spiking in NMDA-driven prefrontal cortex neurons. Cereb Cortex 17:894-908 [Journal] [PubMed]

   Irregular spiking in NMDA-driven prefrontal cortex neurons (Durstewitz and Gabriel 2006) [Model]

Dyhrfjeld-Johnsen J, Santhakumar V, Morgan RJ, Huerta R, Tsimring L, Soltesz I (2007) Topological determinants of epileptogenesis in large-scale structural and functional models of the dentate gyrus derived from experimental data. J Neurophysiol 97:1566-87 [Journal] [PubMed]

   Dentate gyrus (Morgan et al. 2007, 2008, Santhakumar et al. 2005, Dyhrfjeld-Johnsen et al. 2007) [Model]

Egger R, Narayanan RT, Guest JM, Bast A, Udvary D, Messore LF, Das S, de Kock CP, Oberlaender M (2020) Cortical Output Is Gated by Horizontally Projecting Neurons in the Deep Layers Neuron [Journal]

   Sensory-evoked responses of L5 pyramidal tract neurons (Egger et al 2020) [Model]

Egger R, Schmitt AC, Wallace DJ, Sakmann B, Oberlaender M, Kerr JN (2015) Robustness of sensory-evoked excitation is increased by inhibitory inputs to distal apical tuft dendrites. Proc Natl Acad Sci U S A 112:14072-7 [Journal] [PubMed]

   Distal inhibitory control of sensory-evoked excitation (Egger, Schmitt et al. 2015) [Model]

Elbasiouny SM, Bennett DJ, Mushahwar VK (2005) Simulation of dendritic CaV1.3 channels in cat lumbar motoneurons: spatial distribution. J Neurophysiol 94:3961-74 [Journal] [PubMed]

Elbasiouny SM, Bennett DJ, Mushahwar VK (2006) Simulation of Ca2+ persistent inward currents in spinal motoneurones: mode of activation and integration of synaptic inputs. J Physiol 570:355-74 [Journal] [PubMed]

Elbasiouny SM, Mushahwar VK (2007) Suppressing the excitability of spinal motoneurons by extracellularly applied electrical fields: insights from computer simulations. J Appl Physiol (1985) 103:1824-36 [Journal] [PubMed]

Elbasiouny SM, Mushahwar VK (2007) Modulation of motoneuronal firing behavior after spinal cord injury using intraspinal microstimulation current pulses: a modeling study. J Appl Physiol (1985) 103:276-86 [Journal] [PubMed]

Farrow K, Haag J, Borst A (2006) Nonlinear, binocular interactions underlying flow field selectivity of a motion-sensitive neuron. Nat Neurosci 9:1312-20 [Journal] [PubMed]

Fellous JM, Rudolph M, Destexhe A, Sejnowski TJ (2003) Synaptic background noise controls the input/output characteristics of single cells in an in vitro model of in vivo activity. Neuroscience 122:811-29 [PubMed]

Feng J, Zhang P (2001) Behavior of integrate-and-fire and Hodgkin-Huxley models with correlated inputs. Phys Rev E Stat Nonlin Soft Matter Phys 63:051902 [Journal] [PubMed]

Fernández de Sevilla D, Fuenzalida M, Porto Pazos AB, Buño W (2007) Selective shunting of the NMDA EPSP component by the slow afterhyperpolarization in rat CA1 pyramidal neurons. J Neurophysiol 97:3242-55 [Journal] [PubMed]

Ferrante M, Ascoli GA (2015) Distinct and synergistic feedforward inhibition of pyramidal cells by basket and bistratified interneurons. Front Cell Neurosci 9:439 [Journal] [PubMed]

   Feedforward inhibition in pyramidal cells (Ferrante & Ascoli 2015) [Model]

Ferrante M, Blackwell KT, Migliore M, Ascoli GA (2008) Computational models of neuronal biophysics and the characterization of potential neuropharmacological targets. Curr Med Chem 15:2456-71 [PubMed]

   Computational neuropharmacology of CA1 pyramidal neuron (Ferrante et al. 2008) [Model]

Ferrante M, Migliore M, Ascoli GA (2013) Functional impact of dendritic branch-point morphology. J Neurosci 33:2156-65 [Journal] [PubMed]

   Functional impact of dendritic branch point morphology (Ferrante et al., 2013) [Model]

Fineberg JD, Ritter DM, Covarrubias M (2012) Modeling-independent elucidation of inactivation pathways in recombinant and native A-type Kv channels. J Gen Physiol 140:513-27 [Journal] [PubMed]

   Neurophysiological impact of inactivation pathways in A-type K+ channels (Fineberg et al 2012) [Model]

Fink CG, Gliske S, Catoni N, Stacey WC (2015) Network Mechanisms Generating Abnormal and Normal Hippocampal High-Frequency Oscillations: A Computational Analysis. eNeuro [Journal] [PubMed]

   Normal ripples, abnormal ripples, and fast ripples in a hippocampal model (Fink et al. 2015) [Model]

Fischer BJ, Westover MB (2003) The neural multiple access channel. Neurocomputing 52-54:511-518

Fleidervish IA, Lasser-Ross N, Gutnick MJ, Ross WN (2010) Na+ imaging reveals little difference in action potential-evoked Na+ influx between axon and soma. Nat Neurosci 13:852-60 [Journal] [PubMed]

   Action potential-evoked Na+ influx are similar in axon and soma (Fleidervish et al. 2010) [Model]
   Action potential-evoked Na+ influx similar in axon and soma (Fleidervish et al. 2010) (Python) [Model]

Fleidervish IA, Libman L (2008) How cesium dialysis affects the passive properties of pyramidal neurons: implications for voltage clamp studies of persistent sodium current. Art. No. 035001 New Journal of Physics 10:1-13 [Journal]

Fleidervish IA, Libman L, Katz E, Gutnick MJ (2008) Endogenous polyamines regulate cortical neuronal excitability by blocking voltage-gated Na+ channels. Proc Natl Acad Sci U S A 105:18994-9 [Journal] [PubMed]

Földy C, Aradi I, Howard A, Soltesz I (2004) Diversity beyond variance: modulation of firing rates and network coherence by GABAergic subpopulations. Eur J Neurosci 19:119-30 [PubMed]

Forrest MD (2015) Simulation of alcohol action upon a detailed Purkinje neuron model and a simpler surrogate model that runs >400 times faster. BMC Neurosci 16:27 [Journal] [PubMed]

   Alcohol action in a detailed Purkinje neuron model and an efficient simplified model (Forrest 2015) [Model]

Foust AJ, Yu Y, Popovic M, Zecevic D, McCormick DA (2011) Somatic membrane potential and Kv1 channels control spike repolarization in cortical axon collaterals and presynaptic boutons. J Neurosci 31:15490-8 [Journal] [PubMed]

   Spike repolarization in axon collaterals (Foust et al. 2011) [Model]

Franks KM, Bartol TM, Sejnowski TJ (2001) An MCell model of calcium dynamics and frequency-dependence of calmodulin activation in dendritic spines Neurocomputing 38:9-16

Franks KM, Sejnowski TJ (2002) Complexity of calcium signaling in synaptic spines. Bioessays 24:1130-44 [Journal] [PubMed]

Fransen E (2007) Neural response profile design: Reducing epileptogenic activity by modifying neuron responses to synchronized input using novel potassium channels obtained by parameter search optimization Neurocomputing 70(10-12):1630-1634 [Journal]

Frey U, Egert U, Heer F, Hafizovic S, Hierlemann A (2009) Microelectronic system for high-resolution mapping of extracellular electric fields applied to brain slices. Biosens Bioelectron 24:2191-8 [Journal] [PubMed]

Gaines JL, Finn KE, Slopsema JP, Heyboer LA, Polasek KH (2018) A model of motor and sensory axon activation in the median nerve using surface electrical stimulation. J Comput Neurosci 45:29-43 [Journal] [PubMed]

   Human somatosensory and motor axon pair to compare thresholds (Gaines et al 2018) [Model]

Galati DF, Hiester BG, Jones KR (2016) Computer Simulations Support a Morphological Contribution to BDNF Enhancement of Action Potential Generation. Front Cell Neurosci 10:209 [Journal] [PubMed]

   BDNF morphological contributions to AP enhancement (Galati et al. 2016) [Model]

García-Grajales JA, Rucabado G, García-Dopico A, Peña JM, Jérusalem A (2015) Neurite, a finite difference large scale parallel program for the simulation of electrical signal propagation in neurites under mechanical loading. PLoS One 10:e0116532 [Journal] [PubMed]

   Neurite: electrophysiological-mechanical coupling simulation framework (Garcia-Grajales et al 2015) [Model]

Gasparini S, Migliore M, Magee JC (2004) On the initiation and propagation of dendritic spikes in CA1 pyramidal neurons. J Neurosci 24:11046-56 [Journal] [PubMed]

   CA1 pyramidal neuron: dendritic spike initiation (Gasparini et al 2004) [Model]

Gertler TS, Chan CS, Surmeier DJ (2008) Dichotomous anatomical properties of adult striatal medium spiny neurons. J Neurosci 28:10814-24 [Journal] [PubMed]

Gidon A, Segev I (2012) Principles governing the operation of synaptic inhibition in dendrites. Neuron 75:330-41 [Journal] [PubMed]

   Principles governing the operation of synaptic inhibition in dendrites (Gidon & Segev 2012) [Model]

Gillies A, Willshaw D (2006) Membrane channel interactions underlying rat subthalamic projection neuron rhythmic and bursting activity. J Neurophysiol 95:2352-65 [Journal] [PubMed]

   Rat subthalamic projection neuron (Gillies and Willshaw 2006) [Model]

Glabska H, Chintaluri C, Wójcik DK (2017) Collection of Simulated Data from a Thalamocortical Network Model. Neuroinformatics 15:87-99 [Journal] [PubMed]

   Collection of simulated data from a thalamocortical network model (Glabska, Chintaluri, Wojcik 2017) [Model]

Gleeson P, Steuber V, Silver RA (2007) neuroConstruct: a tool for modeling networks of neurons in 3D space. Neuron 54:219-35 [Journal] [PubMed]

Gold C, Henze DA, Koch C (2007) Using extracellular action potential recordings to constrain compartmental models. J Comput Neurosci 23:39-58 [Journal] [PubMed]

   Extracellular Action Potential Simulations (Gold et al 2007) [Model]

Gold C, Henze DA, Koch C, Buzsáki G (2006) On the origin of the extracellular action potential waveform: A modeling study. J Neurophysiol 95:3113-28 [Journal] [PubMed]

   Extracellular Action Potential Simulations (Gold et al 2007) [Model]

Golding NL, Kath WL, Spruston N (2001) Dichotomy of action-potential backpropagation in CA1 pyramidal neuron dendrites. J Neurophysiol 86:2998-3010 [Journal] [PubMed]

   Dichotomy of action-potential backpropagation in CA1 pyramidal neuron dendrites (Golding et al 2001) [Model]

Golding NL, Mickus TJ, Katz Y, Kath WL, Spruston N (2005) Factors mediating powerful voltage attenuation along CA1 pyramidal neuron dendrites. J Physiol 568:69-82 [Journal] [PubMed]

   Voltage attenuation in CA1 pyramidal neuron dendrites (Golding et al 2005) [Model]

Gorin M, Tsitoura C, Kahan A, Watznauer K, Drose DR, Arts M, Mathar R, O'Connor S, Hanganu-Opatz IL, Ben-Shaul Y, Spehr M (2016) Interdependent Conductances Drive Infraslow Intrinsic Rhythmogenesis in a Subset of Accessory Olfactory Bulb Projection Neurons. J Neurosci 36:3127-44 [Journal] [PubMed]

   Infraslow intrinsic rhythmogenesis in a subset of AOB projection neurons (Gorin et al 2016) [Model]

Gouwens NW, Wilson RI (2009) Signal propagation in Drosophila central neurons. J Neurosci 29:6239-49 [Journal] [PubMed]

   Drosophila projection neuron electrotonic structure (Gouwens and Wilson 2009) [Model]

Graham BP (2001) Pattern recognition in a compartmental model of a CA1 pyramidal neuron. Network 12:473-92 [Journal] [PubMed]

   Signal integration in a CA1 pyramidal cell (Graham 2001) [Model]

Graham BP, van Ooyen A (2006) Mathematical modelling and numerical simulation of the morphological development of neurons. BMC Neurosci 7 Suppl 1:S9 [Journal] [PubMed]

   Continuum model of tubulin-driven neurite elongation (Graham et al 2006) [Model]
   Compartmental models of growing neurites (Graham and van Ooyen 2004) [Model]

Graham BP, Wong AYC, Forsythe ID (2001) A computational model of synaptic transmission at the calyx of Held Neurocomputing 38:37-42 [Journal]

   Synaptic transmission at the calyx of Held (Graham et al 2001) [Model]

Grau-Serrat V, Carr CE, Simon JZ (2003) Modeling coincidence detection in nucleus laminaris. Biol Cybern 89:388-96 [Journal] [PubMed]

Grill WM, Simmons AM, Cooper SE, Miocinovic S, Montgomery EB, Baker KB, Rezai AR (2005) Temporal excitation properties of paresthesias evoked by thalamic microstimulation. Clin Neurophysiol 116:1227-34 [Journal] [PubMed]

Groen MR, Paulsen O, Pérez-Garci E, Nevian T, Wortel J, Dekker MP, Mansvelder HD, van Ooyen A, Meredith RM (2014) Development of dendritic tonic GABAergic inhibition regulates excitability and plasticity in CA1 pyramidal neurons. J Neurophysiol 112:287-99 [Journal] [PubMed]

Grosche J, Kettenmann H, Reichenbach A (2002) Bergmann glial cells form distinct morphological structures to interact with cerebellar neurons. J Neurosci Res 68:138-49 [Journal] [PubMed]

Grossman N, Simiaki V, Martinet C, Toumazou C, Schultz SR, Nikolic K (2013) The spatial pattern of light determines the kinetics and modulates backpropagation of optogenetic action potentials. J Comput Neurosci 34:477-88 [Journal] [PubMed]

Grunditz A, Holbro N, Tian L, Zuo Y, Oertner TG (2008) Spine neck plasticity controls postsynaptic calcium signals through electrical compartmentalization. J Neurosci 28:13457-66 [Journal] [PubMed]

   Spine neck plasticity controls postsynaptic calcium signals (Grunditz et al. 2008) [Model]

Grunditz A, Holbro N, Tian L, Zuo Y, Oertner TG (2008s) Supplementary data to Spine Neck Plasticity Controls Postsynaptic Calcium Signals through Electrical Compartmentalization J Neurosci 28(50):13457-13466 [Journal]

Gurkiewicz M, Korngreen A (2007) A numerical approach to ion channel modelling using whole-cell voltage-clamp recordings and a genetic algorithm. PLoS Comput Biol 3:e169 [Journal] [PubMed]

   Ion channel modeling with whole cell and a genetic algorithm (Gurkiewicz and Korngreen 2007) [Model]

Halnes G, Augustinaite S, Heggelund P, Einevoll GT, Migliore M (2011) A multi-compartment model for interneurons in the dorsal lateral geniculate nucleus. PLoS Comput Biol 7:e1002160 [Journal] [PubMed]

   A multi-compartment model for interneurons in the dLGN (Halnes et al. 2011) [Model]

Hardie JB, Pearce RA (2006) Active and passive membrane properties and intrinsic kinetics shape synaptic inhibition in hippocampal CA1 pyramidal neurons. J Neurosci 26:8559-69 [Journal] [PubMed]

Haug SJ, Segal SS (2005) Sympathetic neural inhibition of conducted vasodilatation along hamster feed arteries: complementary effects of alpha1- and alpha2-adrenoreceptor activation. J Physiol 563:541-55 [Journal] [PubMed]

Häusser M, Major G, Stuart GJ (2001) Differential shunting of EPSPs by action potentials. Science 291:138-41 [Journal] [PubMed]

Häusser M, Spruston N, Stuart GJ (2000) Diversity and dynamics of dendritic signaling. Science 290:739-44 [PubMed]

Hayashida Y, Yagi T (2002) Contribution of Ca2+ transporters to electrical response of a non-spiking retinal neuron Neurocomputing 44:7-12

Hayashida Y, Yagi T (2002) On the interaction between voltage-gated conductances and Ca(2+) regulation mechanisms in retinal horizontal cells. J Neurophysiol 87:172-82 [Journal] [PubMed]

Heck D, Borst A, Antkowiak B (2003) Passive spatial and temporal integration of excitatory synaptic inputs in cerebellar Purkinje cells of young rats. Neurosci Lett 341:79-83 [PubMed]

Helmstaedter M, Sakmann B, Feldmeyer D (2009) The relation between dendritic geometry, electrical excitability, and axonal projections of L2/3 interneurons in rat barrel cortex. Cereb Cortex 19:938-50 [Journal] [PubMed]

   Axonal Projection and Interneuron Types (Helmstaedter et al. 2008) [Model]

Hemond P, Epstein D, Boley A, Migliore M, Ascoli GA, Jaffe DB (2008) Distinct classes of pyramidal cells exhibit mutually exclusive firing patterns in hippocampal area CA3b. Hippocampus 18:411-24 [Journal] [PubMed]

   CA3 pyramidal neuron: firing properties (Hemond et al. 2008) [Model]

Hemond P, Migliore M, Ascoli GA, Jaffe DB (2009) The membrane response of hippocampal CA3b pyramidal neurons near rest: Heterogeneity of passive properties and the contribution of hyperpolarization-activated currents. Neuroscience 160:359-70 [Journal] [PubMed]

   Ca3 pyramidal neuron: membrane response near rest (Hemond et al. 2009) [Model]

Henderson D, Miller RF (2003) Evidence for low-voltage-activated (LVA) calcium currents in the dendrites of tiger salamander retinal ganglion cells. Vis Neurosci 20:141-52 [PubMed]

Herrmann U, Flanders M (1998) Directional tuning of single motor units. J Neurosci 18:8402-16 [PubMed]

Herzog RI, Cummins TR, Waxman SG (2001) Persistent TTX-resistant Na+ current affects resting potential and response to depolarization in simulated spinal sensory neurons. J Neurophysiol 86:1351-64 [Journal] [PubMed]

   TTX-R Na+ current effect on cell response (Herzog et al 2001) (MATLAB) [Model]
   TTX-R Na+ current effect on cell response (Herzog et al 2001) [Model]

Higley MJ, Contreras D (2006) Balanced excitation and inhibition determine spike timing during frequency adaptation. J Neurosci 26:448-57 [Journal] [PubMed]

Hilgetag CC, Barbas H (2005) Developmental mechanics of the primate cerebral cortex. Anat Embryol (Berl) 210:411-7 [Journal] [PubMed]

Hines M, Kumar S, Schürmann F (2011) Comparison of neuronal spike exchange methods on a Blue Gene/P supercomputer. Front Comput Neurosci 5:49 [Journal] [PubMed]

   Spike exchange methods for a Blue Gene/P supercomputer (Hines et al., 2011) [Model]

Hines ML, Carnevale NT (2001) NEURON: a tool for neuroscientists. Neuroscientist 7:123-35 [Journal] [PubMed]

   Spatial gridding and temporal accuracy in NEURON (Hines and Carnevale 2001) [Model]

Hines ML, Carnevale NT (2004) Discrete event simulation in the NEURON environment. Neurocomputing 58-60:1117-1122 [Journal]

   Discrete event simulation in the NEURON environment (Hines and Carnevale 2004) [Model]

Hines ML, Eichner H, Schürmann F (2008) Neuron splitting in compute-bound parallel network simulations enables runtime scaling with twice as many processors. J Comput Neurosci 25:203-10 [Journal] [PubMed]

   Cell splitting in neural networks extends strong scaling (Hines et al. 2008) [Model]

Hines ML, Markram H, Schürmann F (2008) Fully implicit parallel simulation of single neurons. J Comput Neurosci 25:439-48 [Journal] [PubMed]

   Fully Implicit Parallel Simulation of Single Neurons (Hines et al. 2008) [Model]

Hiratani N, Fukai T (2018) Redundancy in synaptic connections enables neurons to learn optimally. Proc Natl Acad Sci U S A 115:E6871-E6879 [Journal] [PubMed]

   A model of optimal learning with redundant synaptic connections (Hiratani & Fukai 2018) [Model]

Hô N, Destexhe A (2000) Synaptic background activity enhances the responsiveness of neocortical pyramidal neurons. J Neurophysiol 84:1488-96 [Journal] [PubMed]

Hoch T, Wenning G, Obermayer K (2003) Optimal noise-aided signal transmission through populations of neurons. Phys Rev E Stat Nonlin Soft Matter Phys 68:011911 [Journal] [PubMed]

Holmes WR, Ambros-Ingerson J, Grover LM (2006) Fitting experimental data to models that use morphological data from public databases. J Comput Neurosci 20:349-65 [Journal] [PubMed]

Holmes WR, Grover LM (2006) Quantifying the magnitude of changes in synaptic level parameters with long-term potentiation. J Neurophysiol 96:1478-91 [Journal] [PubMed]

Hong S, Ratté S, Prescott SA, De Schutter E (2012) Single neuron firing properties impact correlation-based population coding. J Neurosci 32:1413-28 [Journal] [PubMed]

   A model for how correlation depends on the neuronal excitability type (Hong et al. 2012) [Model]

Houweling AR, Bazhenov M, Timofeev I, Grenier F, Steriade M, Sejnowski TJ (2002) Frequency-selective augmenting responses by short-term synaptic depression in cat neocortex. J Physiol 542:599-617 [PubMed]

Houweling AR, Bazhenov M, Timofeev I, Steriade M, Sejnowski TJ (1999) Cortical and thalamic components of augmenting responses: A modeling study Neurocomputing 26-27:735-742

Houweling AR, Modi RH, Ganter P, Fellous JM, Sejnowski TJ (2001) Models of frequency preferences of prefrontal cortical neurons. Neurocomputing 38:231-238

Howard AL, Neu A, Morgan RJ, Echegoyen JC, Soltesz I (2007) Opposing modifications in intrinsic currents and synaptic inputs in post-traumatic mossy cells: evidence for single-cell homeostasis in a hyperexcitable network. J Neurophysiol 97:2394-409 [Journal] [PubMed]

Hsu CL, Zhao X, Milstein AD, Spruston N (2018) Persistent sodium current mediates the steep voltage dependence of spatial coding in hippocampal pyramidal neurons Neuron 99:1-16 [Journal]

   CA1 pyramidal neuron: Persistent Na current mediates steep synaptic amplification (Hsu et al 2018) [Model]

Hu W, Tian C, Li T, Yang M, Hou H, Shu Y (2009) Distinct contributions of Na(v)1.6 and Na(v)1.2 in action potential initiation and backpropagation. Nat Neurosci 12:996-1002 [Journal] [PubMed]

   Action Potential initiation and backpropagation in Neocortical L5 Pyramidal Neuron (Hu et al. 2009) [Model]

Iancu OD, Zhang JM, Roberts PD, Bell CC (2007) Postsynaptic modulation of electrical EPSP size investigated using a compartmental model Neurocomputing 70:1685-1688 [Journal]

Iavarone E, Yi J, Shi Y, Zandt BJ, O'Reilly C, Van Geit W, Rössert C, Markram H, Hill SL (2019) Experimentally-constrained biophysical models of tonic and burst firing modes in thalamocortical neurons. PLoS Comput Biol 15:e1006753 [Journal] [PubMed]

   Thalamocortical relay neuron models constrained by experiment and optimization (Iavarone et al 2019) [Model]

Igras E, Foweraker JP, Ware A, Hulliger M (1998) Computer simulation of rhythm-generating networks. Ann N Y Acad Sci 860:483-5 [PubMed]

Inoue M, Hashimoto Y, Kudo Y, Miyakawa H (2001) Dendritic attenuation of synaptic potentials in the CA1 region of rat hippocampal slices detected with an optical method. Eur J Neurosci 13:1711-21 [PubMed]

Inoue M, lin H, Imanaga I, Ogawa K, Warashina A (2004) InsP3 receptor type 2 and oscillatory and monophasic Ca2+ transients in rat adrenal chromaffin cells. Cell Calcium 35:59-70 [PubMed]

Jacobson GA, Diba K, Yaron-Jakoubovitch A, Oz Y, Koch C, Segev I, Yarom Y (2005) Subthreshold voltage noise of rat neocortical pyramidal neurones. J Physiol 564:145-60 [Journal] [PubMed]

Jaffe DB, Brenner R (2018) A computational model for how the fast afterhyperpolarization paradoxically increases gain in regularly firing neurons. J Neurophysiol 119:1506-1520 [Journal] [PubMed]

   Paradoxical effect of fAHP amplitude on gain in dentate gyrus granule cells (Jaffe & Brenner 2018) [Model]

Jaffe DB, Carnevale NT (1999) Passive normalization of synaptic integration influenced by dendritic architecture. J Neurophysiol 82:3268-85 [Journal] [PubMed]

Jaffe DB, Wang B, Brenner R (2011) Shaping of action potentials by type I and type II large-conductance Ca²+-activated K+ channels. Neuroscience 192:205-18 [Journal] [PubMed]

   Shaping of action potentials by different types of BK channels (Jaffe et al., 2011) [Model]

Jamieson J, Boyd HD, McLachlan EM (2003) Simulations to derive membrane resistivity in three phenotypes of guinea pig sympathetic postganglionic neuron. J Neurophysiol 89:2430-40 [Journal] [PubMed]

Jarsky T, Roxin A, Kath WL, Spruston N (2005) Conditional dendritic spike propagation following distal synaptic activation of hippocampal CA1 pyramidal neurons. Nat Neurosci 8:1667-76 [Journal] [PubMed]

   CA1 pyramidal neuron synaptic integration (Jarsky et al. 2005) [Model]

Jedlicka P, Hoon M, Papadopoulos T, Vlachos A, Winkels R, Poulopoulos A, Betz H, Deller T, Brose N, Varoqueaux F, Schwarzacher SW (2011) Increased dentate gyrus excitability in neuroligin-2-deficient mice in vivo. Cereb Cortex 21:357-67 [Journal] [PubMed]

Johnson MD, McIntyre CC (2008) Quantifying the neural elements activated and inhibited by globus pallidus deep brain stimulation. J Neurophysiol 100:2549-63 [Journal] [PubMed]

   GPi/GPe neuron models (Johnson and McIntyre 2008) [Model]

Jones KE, Carlin KP, Rempel J, Jordan LM, Brownstone RM (2000) Simulation techniques for localising and identifying the kinetics of calcium channels in dendritic neurones Neurocomputing 32:173-180

Jones PW, Gabbiani F (2012) Impact of neural noise on a sensory-motor pathway signaling impending collision. J Neurophysiol 107:1067-79 [Journal] [PubMed]

   LGMD Variability and logarithmic compression in dendrites (Jones and Gabbiani, 2012, 2012B) [Model]

Justus D, Dalügge D, Bothe S, Fuhrmann F, Hannes C, Kaneko H, Friedrichs D, Sosulina L, Schwarz I, Elliott DA, Schoch S, Bradke F, Schwarz MK, Remy S (2017) Glutamatergic synaptic integration of locomotion speed via septoentorhinal projections. Nat Neurosci 20:16-19 [Journal] [PubMed]

   Synaptic integration by MEC neurons (Justus et al. 2017) [Model]

Kager H, Wadman WJ, Somjen GG (2000) Simulated seizures and spreading depression in a neuron model incorporating interstitial space and ion concentrations. J Neurophysiol 84:495-512 [Journal] [PubMed]

Kager H, Wadman WJ, Somjen GG (2002) Conditions for the triggering of spreading depression studied with computer simulations. J Neurophysiol 88:2700-12 [Journal] [PubMed]

Kager H, Wadman WJ, Somjen GG (2007) Seizure-like afterdischarges simulated in a model neuron. J Comput Neurosci 22:105-28 [Journal] [PubMed]

Kampa BM, Stuart GJ (2006) Calcium spikes in basal dendrites of layer 5 pyramidal neurons during action potential bursts. J Neurosci 26:7424-32 [Journal] [PubMed]

   Calcium spikes in basal dendrites (Kampa and Stuart 2006) [Model]

Kanold PO, Manis PB (2001) A physiologically based model of discharge pattern regulation by transient K+ currents in cochlear nucleus pyramidal cells. J Neurophysiol 85:523-38 [Journal] [PubMed]

   CN pyramidal fusiform cell (Kanold, Manis 2001) [Model]

Kaplan BA, Lansner A (2014) A spiking neural network model of self-organized pattern recognition in the early mammalian olfactory system. Front Neural Circuits 8:5 [Journal] [PubMed]

   Self-organized olfactory pattern recognition (Kaplan & Lansner 2014) [Model]

Karmarkar UR, Najarian MT, Buonomano DV (2002) Mechanisms and significance of spike-timing dependent plasticity. Biol Cybern 87:373-82 [Journal] [PubMed]

Katz Y, Menon V, Nicholson DA, Geinisman Y, Kath WL, Spruston N (2009) Synapse distribution suggests a two-stage model of dendritic integration in CA1 pyramidal neurons. Neuron 63:171-7 [Journal] [PubMed]

   A two-stage model of dendritic integration in CA1 pyramidal neurons (Katz et al. 2009) [Model]

Keren N, Peled N, Korngreen A (2005) Constraining compartmental models using multiple voltage recordings and genetic algorithms. J Neurophysiol 94:3730-42 [Journal] [PubMed]

Khaliq ZM, Gouwens NW, Raman IM (2003) The contribution of resurgent sodium current to high-frequency firing in Purkinje neurons: an experimental and modeling study. J Neurosci 23:4899-912 [PubMed]

   Cerebellar Purkinje Cell: resurgent Na current and high frequency firing (Khaliq et al 2003) [Model]

Khatri SN, Wu WC, Yang Y, Pugh JR (2019) Mechanisms of GABAB receptor enhancement of extrasynaptic GABAA receptor currents in cerebellar granule cells. Sci Rep 9:16683 [Journal] [PubMed]

Kim H (2017) Impact of the localization of dendritic calcium persistent inward current on the input-output properties of spinal motoneuron pool: a computational study. J Appl Physiol (1985) 123:1166-1187 [Journal] [PubMed]

   Locational influence of dendritic PIC on input-output properties of spinal motoneurons (Kim 2017) [Model]

Kim H (2017) Muscle length-dependent contribution of motoneuron Cav1.3 channels to force production in model slow motor unit. J Appl Physiol (1985) 123:88-105 [Journal] [PubMed]

   A model of slow motor unit (Kim, 2017) [Model]

Kim H, Jones KE, Heckman CJ (2014) Asymmetry in signal propagation between the soma and dendrites plays a key role in determining dendritic excitability in motoneurons. PLoS One 9:e95454 [Journal] [PubMed]

   Locational influence of dendritic PIC on input-output properties of spinal motoneurons (Kim 2017) [Model]

Kim J, Nadal MS, Clemens AM, Baron M, Jung SC, Misumi Y, Rudy B, Hoffman DA (2008) Kv4 accessory protein DPPX (DPP6) is a critical regulator of membrane excitability in hippocampal CA1 pyramidal neurons. J Neurophysiol 100:1835-47 [Journal] [PubMed]

Kim JK, Fiorillo CD (2017) Theory of optimal balance predicts and explains the amplitude and decay time of synaptic inhibition. Nat Commun 8:14566 [Journal] [PubMed]

   Optimal balance predicts/explains amplitude and decay time of iPSGs (Kim & Fiorillo 2017) [Model]

Kim Y, Hsu CL, Cembrowski MS, Mensh BD, Spruston N (2015) Dendritic sodium spikes are required for long-term potentiation at distal synapses on hippocampal pyramidal neurons. Elife [Journal] [PubMed]

   CA1 pyramidal neuron: Dendritic Na+ spikes are required for LTP at distal synapses (Kim et al 2015) [Model]

Kobayashi R, Tsubo Y, Shinomoto S (2009) Made-to-order spiking neuron model equipped with a multi-timescale adaptive threshold. Front Comput Neurosci 3:9 [Journal] [PubMed]

   Multi-timescale adaptive threshold model (Kobayashi et al 2009) (NEURON) [Model]
   Multi-timescale adaptive threshold model (Kobayashi et al 2009) [Model]

Kochubey S, Savtchenko L (2008) Geometrical size of the neuronal network plays a key role in synchronization of its activity Neurophysiology 40(3):224-227 [Journal]

Koene RA, Tijms B, van Hees P, Postma F, de Ridder A, Ramakers GJ, van Pelt J, van Ooyen A (2009) NETMORPH: a framework for the stochastic generation of large scale neuronal networks with realistic neuron morphologies. Neuroinformatics 7:195-210 [Journal] [PubMed]

   NETMORPH: creates NNs with realistic neuron morphologies (Koene et al. 2009, van Ooyen et al. 2014) [Model]

Komendantov AO, Ascoli GA (2009) Dendritic excitability and neuronal morphology as determinants of synaptic efficacy. J Neurophysiol 101:1847-66 [Journal] [PubMed]

Koos T, Tepper JM, Wilson CJ (2004) Comparison of IPSCs evoked by spiny and fast-spiking neurons in the neostriatum. J Neurosci 24:7916-22 [Journal] [PubMed]

Kopell N, Borgers C, Pervouchine D, Malerba P, Tort ABL (2010) Gamma and theta rhythms in biophysical models of hippocampal circuits Hippocampal Microcircuits: A Computational Modeller`s Resource Book. Ch. 15., Cutsuridis V, Graham BF, Cobb S, Vida I, ed. [Journal]

   Gamma and theta rythms in biophysical models of hippocampus circuits (Kopell et al. 2011) [Model]

Kovalsky Y, Amir R, Devor M (2008) Subthreshold oscillations facilitate neuropathic spike discharge by overcoming membrane accommodation. Exp Neurol 210:194-206 [Journal] [PubMed]

Kovalsky Y, Amir R, Devor M (2009) Simulation in sensory neurons reveals a key role for delayed Na+ current in subthreshold oscillations and ectopic discharge: implications for neuropathic pain. J Neurophysiol 102:1430-42 [Journal] [PubMed]

   Dorsal root ganglion (DRG) neuronal model (Kovalsky et al. 2009) [Model]

Kozloski J, Wagner J (2011) An Ultrascalable Solution to Large-scale Neural Tissue Simulation. Front Neuroinform 5:15 [Journal] [PubMed]

Kretzberg J, Kretschmer F, Marin-Burgin A (2007) Effects of multiple spike-initiation zones in touch sensory cells of the leech , Volume 70, Issues 10-12, June 2007, Pages 1645-1651 Neurocomputing 70:1645-1651 [Journal]

Kubota Y, Karube F, Nomura M, Gulledge AT, Mochizuki A, Schertel A, Kawaguchi Y (2011) Conserved properties of dendritic trees in four cortical interneuron subtypes. Sci Rep 1:89 [Journal] [PubMed]

   Four cortical interneuron subtypes (Kubota et al. 2011) [Model]

Kubota Y, Kondo S, Nomura M, Hatada S, Yamaguchi N, Mohamed AA, Karube F, Lübke J, Kawaguchi Y (2015) Functional effects of distinct innervation styles of pyramidal cells by fast spiking cortical interneurons. Elife [Journal] [PubMed]

   A Layer V CCS type pyramidal cell, inhibitory synapse current conduction (Kubota Y et al., 2015) [Model]

Kufel DS, Wojcik GM (2018) Analytical modelling of temperature effects on an AMPA-type synapse. J Comput Neurosci 44:379-391 [Journal] [PubMed]

   Analytical modelling of temperature effects on an AMPA-type synapse (Kufel & Wojcik 2018) [Model]

Kuo JJ, Lee RH, Zhang L, Heckman CJ (2006) Essential role of the persistent sodium current in spike initiation during slowly rising inputs in mouse spinal neurones. J Physiol 574:819-34 [Journal] [PubMed]

Kuznetsova AY, Huertas MA, Kuznetsov AS, Paladini CA, Canavier CC (2010) Regulation of firing frequency in a computational model of a midbrain dopaminergic neuron. J Comput Neurosci 28:389-403 [Journal] [PubMed]

   Regulation of firing frequency in a midbrain dopaminergic neuron model (Kuznetsova et al. 2010) [Model]

Lasiene J, Shupe L, Perlmutter S, Horner P (2008) No evidence for chronic demyelination in spared axons after spinal cord injury in a mouse. J Neurosci 28:3887-96 [Journal] [PubMed]

Le Franc Y, Le Masson G (2010) Multiple firing patterns in deep dorsal horn neurons of the spinal cord: computational analysis of mechanisms and functional implications. J Neurophysiol 104:1978-96 [Journal] [PubMed]

Le Masson G, Przedborski S, Abbott LF (2014) A computational model of motor neuron degeneration. Neuron 83:975-88 [Journal] [PubMed]

Lee DC, Jensen AL, Schiefer MA, Morgan CW, Grill WM (2005) Structural mechanisms to produce differential dendritic gains. Brain Res 1033:117-27 [Journal] [PubMed]

Lee SC, Hayashida Y, Ishida AT (2003) Availability of low-threshold Ca2+ current in retinal ganglion cells. J Neurophysiol 90:3888-901 [Journal] [PubMed]

   Availability of low-threshold Ca2+ current in retinal ganglion cells (Lee SC et al. 2003) [Model]

Letzkus JJ, Kampa BM, Stuart GJ (2006) Learning rules for spike timing-dependent plasticity depend on dendritic synapse location. J Neurosci 26:10420-9 [Journal] [PubMed]

   STDP depends on dendritic synapse location (Letzkus et al. 2006) [Model]

Leys SP, Mackie GO, Meech RW (1999) Impulse conduction in a sponge. J Exp Biol 202 (Pt 9):1139-50 [PubMed]

Lezmy J, Lipinsky M, Khrapunsky Y, Patrich E, Shalom L, Peretz A, Fleidervish IA, Attali B (2017) M-current inhibition rapidly induces a unique CK2-dependent plasticity of the axon initial segment. Proc Natl Acad Sci U S A 114:E10234-E10243 [Journal] [PubMed]

Liebmann L, Karst H, Sidiropoulou K, van Gemert N, Meijer OC, Poirazi P, Joëls M (2008) Differential effects of corticosterone on the slow afterhyperpolarization in the basolateral amygdala and CA1 region: possible role of calcium channel subunits. J Neurophysiol 99:958-68 [Journal] [PubMed]

Lin X, Hant J (2001) Computer-simulation studies on roles of potassium currents in neurotransmission of the auditory nerve. Hear Res 152:90-9 [PubMed]

Lin Z, Lin Y, Schorge S, Pan JQ, Beierlein M, Lipscombe D (1999) Alternative splicing of a short cassette exon in alpha1B generates functionally distinct N-type calcium channels in central and peripheral neurons. J Neurosci 19:5322-31 [PubMed]

Lindroos R, Dorst MC, Du K, Filipovic M, Keller D, Ketzef M, Kozlov AK, Kumar A, Lindahl M, Nair AG, Pérez-Fernández J, Grillner S, Silberberg G, Hellgren Kotaleski J (2018) Basal Ganglia Neuromodulation Over Multiple Temporal and Structural Scales-Simulations of Direct Pathway MSNs Investigate the Fast Onset of Dopaminergic Effects and Predict the Role of Kv4.2. Front Neural Circuits 12:3 [Journal] [PubMed]

   Striatal D1R medium spiny neuron, including a subcellular DA cascade (Lindroos et al 2018) [Model]

Lindsay AE, Lindsay KA, Rosenberg JR (2005) Increased computational accuracy in multi-compartmental cable models by a novel approach for precise point process localization. J Comput Neurosci 19:21-38 [Journal] [PubMed]

   Increased computational accuracy in multi-compartmental cable models (Lindsay et al. 2005) [Model]

Liu CY, Xiao C, Fraser SE, Lester HA, Koos DS (2012) Electrophysiological characterization of Grueneberg ganglion olfactory neurons: spontaneous firing, sodium conductance, and hyperpolarization-activated currents. J Neurophysiol 108:1318-34 [Journal] [PubMed]

   Model of repetitive firing in Grueneberg ganglion olfactory neurons (Liu et al., 2012) [Model]

Liu Z, Ren J, Murphy TH (2003) Decoding of synaptic voltage waveforms by specific classes of recombinant high-threshold Ca(2+) channels. J Physiol 553:473-88 [Journal] [PubMed]

London M, Meunier C, Segev I (1999) Signal transfer in passive dendrites with nonuniform membrane conductance. J Neurosci 19:8219-33 [PubMed]

London M, Schreibman A, Häusser M, Larkum ME, Segev I (2002) The information efficacy of a synapse. Nat Neurosci 5:332-40 [Journal] [PubMed]

London M, Segev I (2001) Synaptic scaling in vitro and in vivo. Nat Neurosci 4:853-5 [Journal] [PubMed]

   CA1 Pyramidal Neuron: Synaptic Scaling (London, Segev 2001) [Model]

López-Jury L, Meza RC, Brown MTC, Henny P, Canavier CC (2018) Morphological and Biophysical Determinants of the Intracellular and Extracellular Waveforms in Nigral Dopaminergic Neurons: A Computational Study. J Neurosci 38:8295-8310 [Journal] [PubMed]

   Determinants of the intracellular and extracellular waveforms in DA neurons (Lopez-Jury et al 2018) [Model]

Lopreore CL, Bartol TM, Coggan JS, Keller DX, Sosinsky GE, Ellisman MH, Sejnowski TJ (2008) Computational modeling of three-dimensional electrodiffusion in biological systems: application to the node of Ranvier. Biophys J 95:2624-35 [Journal] [PubMed]

Lowe G (2002) Inhibition of backpropagating action potentials in mitral cell secondary dendrites. J Neurophysiol 88:64-85 [Journal] [PubMed]

Luthman J, Hoebeek FE, Maex R, Davey N, Adams R, De Zeeuw CI, Steuber V (2011) STD-dependent and independent encoding of input irregularity as spike rate in a computational model of a cerebellar nucleus neuron. Cerebellum 10:667-82 [Journal] [PubMed]

   Robust transmission in the inhibitory Purkinje Cell to Cerebellar Nuclei pathway (Abbasi et al 2017) [Model]
   STD-dependent and independent encoding of Input irregularity as spike rate (Luthman et al. 2011) [Model]

Magee JC, Cook EP (2001) Synaptic scaling in vitro and in vivo - Reply Nature Neuroscience 4:854-855

Magistretti J, Castelli L, Forti L, D'Angelo E (2006) Kinetic and functional analysis of transient, persistent and resurgent sodium currents in rat cerebellar granule cells in situ: an electrophysiological and modelling study. J Physiol 573:83-106 [Journal] [PubMed]

Mahapatra C, Brain KL, Manchanda R (2018) A biophysically constrained computational model of the action potential of mouse urinary bladder smooth muscle. PLoS One 13:e0200712 [Journal] [PubMed]

   Action potential of mouse urinary bladder smooth muscle (Mahapatra et al 2018) [Model]

Mahnam A, Hashemi SM, Grill WM (2008) Computational evaluation of methods for measuring the spatial extent of neural activation. J Neurosci Methods 173:153-64 [Journal] [PubMed]

Mäki-Marttunen T, Halnes G, Devor A, Metzner C, Dale AM, Andreassen OA, Einevoll GT (2018) A stepwise neuron model fitting procedure designed for recordings with high spatial resolution: Application to layer 5 pyramidal cells. J Neurosci Methods 293:264-283 [Journal] [PubMed]

   Layer V pyramidal cell model with reduced morphology (Mäki-Marttunen et al 2018) [Model]

Mäki-Marttunen T, Krull F, Bettella F, Hagen E, Næss S, Ness TV, Moberget T, Elvsåshagen T, Metzner C, Devor A, Edwards AG, Fyhn M, Djurovic S, Dale AM, Andreassen OA, Einevoll GT (2019) Alterations in Schizophrenia-Associated Genes Can Lead to Increased Power in Delta Oscillations. Cereb Cortex 29:875-891 [Journal] [PubMed]

   SCZ-associated variant effects on L5 pyr cell NN activity and delta osc. (Maki-Marttunen et al 2018) [Model]

Mandge D, Manchanda R (2015) Computational studies on bladder small dorsal root ganglion neurons: Modelling BK channels. Conf Proc IEEE Eng Med Biol Soc 2015:5376-9 [Journal] [PubMed]

Mandge D, Manchanda R (2018) A biophysically detailed computational model of urinary bladder small DRG neuron soma. PLoS Comput Biol 14:e1006293 [Journal] [PubMed]

   Computational model of bladder small DRG neuron soma (Mandge & Manchanda 2018) [Model]

Manis PB, Campagnola L (2018) A biophysical modelling platform of the cochlear nucleus and other auditory circuits: From channels to networks. Hear Res 360:76-91 [Journal] [PubMed]

   Modelling platform of the cochlear nucleus and other auditory circuits (Manis & Compagnola 2018) [Model]

Marasco A, Limongiello A, Migliore M (2012) Fast and accurate low-dimensional reduction of biophysically detailed neuron models. Sci Rep 2:928 [Journal] [PubMed]

   Ca1 pyramidal neuron: reduction model (Marasco et al. 2012) [Model]

Marasco A, Limongiello A, Migliore M (2013) Using Strahler's analysis to reduce up to 200-fold the run time of realistic neuron models. Sci Rep 3:2934 [Journal] [PubMed]

   Using Strahler`s analysis to reduce realistic models (Marasco et al, 2013) [Model]

Marcelin B, Chauvière L, Becker A, Migliore M, Esclapez M, Bernard C (2009) h channel-dependent deficit of theta oscillation resonance and phase shift in temporal lobe epilepsy. Neurobiol Dis 33:436-47 [Journal] [PubMed]

   CA1 pyramidal neuron: h channel-dependent deficit of theta oscill. resonance (Marcelin et al. 2008) [Model]

Markaki M, Orphanoudakis S, Poirazi P (2005) Modelling reduced excitability in aged CA1 neurons as a calcium-dependent process Neurocomputing 65-66:305-314 [Journal]

   Modelling reduced excitability in aged CA1 neurons as a Ca-dependent process (Markaki et al. 2005) [Model]

Markram H, Muller E, Ramaswamy S, Reimann MW, Abdellah M, Sanchez CA, Ailamaki A, Alonso-Nanclares L, Antille N, Arsever S, Kahou GA, Berger TK, Bilgili A, Buncic N, Chalimourda A, Chindemi G, Courcol JD, Delalondre F, Delattre V, Druckmann S, Dumusc R, Dynes J, Eilemann S, Gal E, Gevaert ME, Ghobril JP, Gidon A, Graham JW, Gupta A, Haenel V, Hay E, Heinis T, Hernando JB, Hines M, Kanari L, Keller D, Kenyon J, Khazen G, Kim Y, King JG, Kisvarday Z, Kumbhar P, Lasserre S, Le Bé JV, Magalhães BR, Merchán-Pérez A, Meystre J, Morrice BR, Muller J, Muñoz-Céspedes A, Muralidhar S, Muthurasa K, Nachbaur D, Newton TH, Nolte M, Ovcharenko A, Palacios J, Pastor L, Perin R, Ranjan R, Riachi I, Rodríguez JR, Riquelme JL, Rössert C, Sfyrakis K, Shi Y, Shillcock JC, Silberberg G, Silva R, Tauheed F, Telefont M, Toledo-Rodriguez M, Tränkler T, Van Geit W, Díaz JV, Walker R, Wang Y, Zaninetta SM (2015) Reconstruction and Simulation of Neocortical Microcircuitry. Cell 163:456-92 [Journal] [PubMed]

   The neocortical microcircuit collaboration portal (Markram et al. 2015) [Model]

Martinello K, Giacalone E, Migliore M, Brown DA, Shah MM (2019) The subthreshold-active KV7 current regulates neurotransmission by limiting spike-induced Ca2+ influx in hippocampal mossy fiber synaptic terminals. Commun Biol 2:145 [Journal] [PubMed]

   Hippocampal Mossy Fiber bouton: presynaptic KV7 channel function (Martinello et al 2019) [Model]

Martínez-Cañada P, Morillas C, Pino B, Ros E, Pelayo F (2016) A Computational Framework for Realistic Retina Modeling. Int J Neural Syst 26:1650030 [Journal] [PubMed]

   COREM: configurable retina simulator (Martínez-Cañada et al., 2016) [Model]

Masurkar AV, Chen WR (2011) Calcium currents of olfactory bulb juxtaglomerular cells: profile and multiple conductance plateau potential simulation. Neuroscience 192:231-46 [Journal] [PubMed]

   Calcium and potassium currents of olfactory bulb juxtaglomerular cells (Masurkar and Chen 2011) [Model]

Masurkar AV, Chen WR (2011) Potassium currents of olfactory bulb juxtaglomerular cells: characterization, simulation, and implications for plateau potential firing. Neuroscience 192:247-62 [Journal] [PubMed]

   Calcium and potassium currents of olfactory bulb juxtaglomerular cells (Masurkar and Chen 2011) [Model]

McColgan T, Liu J, Kuokkanen PT, Carr CE, Wagner H, Kempter R (2017) Dipolar extracellular potentials generated by axonal projections. Elife [Journal] [PubMed]

   Dipolar extracellular potentials generated by axonal projections (McColgan et al 2017) [Model]

McDougal RA, Shepherd GM (2015) 3D-printer visualization of neuron models. Front Neuroinform 9:18 [Journal] [PubMed]

   3D-printer visualization of NEURON models (McDougal and Shepherd, 2015) [Model]

McIntyre CC, Grill WM (1999) Excitation of central nervous system neurons by nonuniform electric fields. Biophys J 76:878-88 [Journal] [PubMed]

McIntyre CC, Grill WM (2000) Selective microstimulation of central nervous system neurons. Ann Biomed Eng 28:219-33 [PubMed]

McIntyre CC, Grill WM (2002) Extracellular stimulation of central neurons: influence of stimulus waveform and frequency on neuronal output. J Neurophysiol 88:1592-604 [Journal] [PubMed]

McIntyre CC, Grill WM, Sherman DL, Thakor NV (2004) Cellular effects of deep brain stimulation: model-based analysis of activation and inhibition. J Neurophysiol 91:1457-69 [Journal] [PubMed]

McTavish TS, Migliore M, Shepherd GM, Hines ML (2012) Mitral cell spike synchrony modulated by dendrodendritic synapse location. Front Comput Neurosci 6:3 [Journal] [PubMed]

   Synchrony by synapse location (McTavish et al. 2012) [Model]

Meffin H, Burkitt AN, Grayden DB (2004) An analytical model for the "large, fluctuating synaptic conductance state" typical of neocortical neurons in vivo. J Comput Neurosci 16:159-75 [Journal] [PubMed]

Mehaffey WH, Doiron B, Maler L, Turner RW (2005) Deterministic multiplicative gain control with active dendrites. J Neurosci 25:9968-77 [Journal] [PubMed]

Melnick IV, Santos SF, Safronov BV (2004) Mechanism of spike frequency adaptation in substantia gelatinosa neurones of rat. J Physiol 559:383-95 [Journal] [PubMed]

   Spike frequency adaptation in spinal sensory neurones (Melnick et al 2004) [Model]

Melnick IV, Santos SF, Szokol K, Szûcs P, Safronov BV (2004) Ionic basis of tonic firing in spinal substantia gelatinosa neurons of rat. J Neurophysiol 91:646-55 [Journal] [PubMed]

   Tonic firing in substantia gelatinosa neurons (Melnick et al 2004) [Model]

Melozzi F, Woodman MM, Jirsa VK, Bernard C (2017) The Virtual Mouse Brain: A Computational Neuroinformatics Platform to Study Whole Mouse Brain Dynamics eNeuro [Journal]

   The Virtual Mouse Brain (TVMB) (Melozzi et al. 2017) [Model]

Menon V, Musial TF, Liu A, Katz Y, Kath WL, Spruston N, Nicholson DA (2013) Balanced synaptic impact via distance-dependent synapse distribution and complementary expression of AMPARs and NMDARs in hippocampal dendrites. Neuron 80:1451-63 [Journal] [PubMed]

   Distance-dependent synaptic strength in CA1 pyramidal neurons (Menon et al. 2013) [Model]

Menon V, Spruston N, Kath WL (2009) A state-mutating genetic algorithm to design ion-channel models. Proc Natl Acad Sci U S A 106:16829-34 [Journal] [PubMed]

   Hippocampus CA1 pyramidal model with Na channel exhibiting slow inactivation (Menon et al. 2009) [Model]

Mercer JN, Chan CS, Tkatch T, Held J, Surmeier DJ (2007) Nav1.6 sodium channels are critical to pacemaking and fast spiking in globus pallidus neurons. J Neurosci 27:13552-66 [Journal] [PubMed]

   Nav1.6 sodium channel model in globus pallidus neurons (Mercer et al. 2007) [Model]

Meuth P, Meuth SG, Jacobi D, Broicher T, Pape HC, Budde T (2005) Get the rhythm: modeling neuronal activity. J Undergrad Neurosci Educ 4:A1-A11 [Journal] [PubMed]

   Thalamic neuron: Modeling rhythmic neuronal activity (Meuth et al. 2005) [Model]

Meuth SG, Bittner S, Meuth P, Simon OJ, Budde T, Wiendl H (2008) TWIK-related acid-sensitive K+ channel 1 (TASK1) and TASK3 critically influence T lymphocyte effector functions. J Biol Chem 283:14559-70 [Journal] [PubMed]

Meza RC, López-Jury L, Canavier CC, Henny P (2018) Role of the Axon Initial Segment in the Control of Spontaneous Frequency of Nigral Dopaminergic Neurons In Vivo. J Neurosci 38:733-744 [Journal] [PubMed]

   Role of the AIS in the control of spontaneous frequency of dopaminergic neurons (Meza et al 2017) [Model]

Miceli F, Soldovieri MV, Ambrosino P, Barrese V, Migliore M, Cilio MR, Taglialatela M (2013) Genotype-phenotype correlations in neonatal epilepsies caused by mutations in the voltage sensor of K(v)7.2 potassium channel subunits. Proc Natl Acad Sci U S A 110:4386-91 [Journal] [PubMed]

   CA1 pyramidal neuron: effects of R213Q and R312W Kv7.2 mutations (Miceli et al. 2013) [Model]

Miceli F, Soldovieri MV, Ambrosino P, De Maria M, Migliore M, Migliore R, Taglialatela M (2015) Early-onset epileptic encephalopathy caused by gain-of-function mutations in the voltage sensor of Kv7.2 and Kv7.3 potassium channel subunits. J Neurosci 35:3782-93 [Journal] [PubMed]

   Early-onset epileptic encephalopathy (Miceli et al. 2015) [Model]

Miceli F, Soldovieri MV, Lugli L, Bellini G, Ambrosino P, Migliore M, del Giudice EM, Ferrari F, Pascotto A, Taglialatela M (2009) Neutralization of a unique, negatively-charged residue in the voltage sensor of K V 7.2 subunits in a sporadic case of benign familial neonatal seizures. Neurobiol Dis 34:501-10 [Journal] [PubMed]

   CA1 pyramidal neurons: effects of a Kv7.2 mutation (Miceli et al. 2009) [Model]

Miceli S, Ness TV, Einevoll GT, Schubert D (2017) Impedance Spectrum in Cortical Tissue: Implications for Propagation of LFP Signals on the Microscopic Level Eneuro 4:1-15 [Journal]

   Impedance spectrum in cortical tissue: implications for LFP signal propagation (Miceli et al. 2017) [Model]

Migliore M (2003) On the integration of subthreshold inputs from Perforant Path and Schaffer Collaterals in hippocampal CA1 pyramidal neurons. J Comput Neurosci 14:185-92 [PubMed]

   CA1 pyramidal neuron: integration of subthreshold inputs from PP and SC (Migliore 2003) [Model]

Migliore M, Cannia C, Canavier CC (2008) A modeling study suggesting a possible pharmacological target to mitigate the effects of ethanol on reward-related dopaminergic signaling. J Neurophysiol 99:2703-7 [Journal] [PubMed]

   Nigral dopaminergic neurons: effects of ethanol on Ih (Migliore et al. 2008) [Model]

Migliore M, Cannia C, Lytton WW, Markram H, Hines ML (2006) Parallel network simulations with NEURON. J Comput Neurosci 21:119-29 [Journal] [PubMed]

   Parallel network simulations with NEURON (Migliore et al 2006) [Model]

Migliore M, Cavarretta F, Hines ML, Shepherd GM (2014) Distributed organization of a brain microcircuit analyzed by three-dimensional modeling: the olfactory bulb. Front Comput Neurosci 8:50 [Journal] [PubMed]

   3D model of the olfactory bulb (Migliore et al. 2014) [Model]

Migliore M, De Blasi I, Tegolo D, Migliore R (2011) A modeling study suggesting how a reduction in the context-dependent input on CA1 pyramidal neurons could generate schizophrenic behavior. Neural Netw 24:552-9 [Journal] [PubMed]

   CA1 pyramidal neuron: schizophrenic behavior (Migliore et al. 2011) [Model]

Migliore M, De Simone G, Migliore R (2015) Effect of the initial synaptic state on the probability to induce long-term potentiation and depression. Biophys J 108:1038-46 [Journal] [PubMed]

   Effect of the initial synaptic state on the probability to induce LTP and LTD (Migliore et al. 2015) [Model]

Migliore M, Ferrante M, Ascoli GA (2005) Signal propagation in oblique dendrites of CA1 pyramidal cells. J Neurophysiol 94:4145-55 [Journal] [PubMed]

   CA1 pyramidal neuron: signal propagation in oblique dendrites (Migliore et al 2005) [Model]

Migliore M, Hines ML, McTavish TS, Shepherd GM (2010) Functional roles of distributed synaptic clusters in the mitral-granule cell network of the olfactory bulb. Front Integr Neurosci 4:122 [Journal] [PubMed]

   Olfactory bulb cluster formation (Migliore et al. 2010) [Model]

Migliore M, Hines ML, Shepherd GM (2005) The role of distal dendritic gap junctions in synchronization of mitral cell axonal output. J Comput Neurosci 18:151-61 [Journal] [PubMed]

   Olfactory bulb mitral cell: synchronization by gap junctions (Migliore et al 2005) [Model]

Migliore M, Hoffman DA, Magee JC, Johnston D (1999) Role of an A-type K+ conductance in the back-propagation of action potentials in the dendrites of hippocampal pyramidal neurons. J Comput Neurosci 7:5-15 [PubMed]

   CA1 pyramidal neuron (Migliore et al 1999) [Model]

Migliore M, Inzirillo C, Shepherd GM (2007) Learning mechanism for column formation in the olfactory bulb. Front Integr Neurosci 1:12 [Journal] [PubMed]

   Olfactory bulb mitral and granule cell column formation (Migliore et al. 2007) [Model]

Migliore M, Messineo L, Cardaci M (2000) A model of the effects of cognitive load on the subjective estimation and production of time intervals. Biosystems 58:187-93 [PubMed]

Migliore M, Messineo L, Cardaci M, Ayala GF (2001) Quantitative modeling of perception and production of time intervals. J Neurophysiol 86:2754-60 [Journal] [PubMed]

   Estimation and Production of Time Intervals (Migliore et al 2001) [Model]

Migliore M, Messineo L, Ferrante M (2004) Dendritic Ih selectively blocks temporal summation of unsynchronized distal inputs in CA1 pyramidal neurons. J Comput Neurosci 16:5-13 [PubMed]

   CA1 pyramidal neuron: effects of Ih on distal inputs (Migliore et al 2004) [Model]

Migliore M, Novara G, Tegolo D (2008) Single neuron binding properties and the magical number 7. Hippocampus 18:1122-30 [Journal] [PubMed]

   CA1 pyramidal neurons: binding properties and the magical number 7 (Migliore et al. 2008) [Model]

Migliore M, Shepherd GM (2002) Emerging rules for the distributions of active dendritic conductances. Nat Rev Neurosci 3:362-70 [Journal] [PubMed]

   Modulation of temporal integration window (Migliore, Shepherd 2002) [Model]

Migliore M, Shepherd GM (2008) Dendritic action potentials connect distributed dendrodendritic microcircuits. J Comput Neurosci 24:207-21 [Journal] [PubMed]

   Olfactory bulb mitral and granule cell: dendrodendritic microcircuits (Migliore and Shepherd 2008) [Model]

Migliore R, De Simone G, Leinekugel X, Migliore M (2017) The possible consequences for cognitive functions of external electric fields at power line frequency on hippocampal CA1 pyramidal neurons. Eur J Neurosci 45:1024-1031 [Journal] [PubMed]

   Effects of electric fields on cognitive functions (Migliore et al 2016) [Model]

Minneci F, Janahmadi M, Migliore M, Dragicevic N, Avossa D, Cherubini E (2007) Signaling properties of stratum oriens interneurons in the hippocampus of transgenic mice expressing EGFP in a subset of somatostatin-containing cells. Hippocampus 17:538-53 [Journal] [PubMed]

   CA1 oriens alveus interneurons: signaling properties (Minneci et al. 2007) [Model]

Miocinovic S, Grill WM (2004) Sensitivity of temporal excitation properties to the neuronal element activated by extracellular stimulation. J Neurosci Methods 132:91-9 [PubMed]

Miocinovic S, Parent M, Butson CR, Hahn PJ, Russo GS, Vitek JL, McIntyre CC (2006) Computational analysis of subthalamic nucleus and lenticular fasciculus activation during therapeutic deep brain stimulation. J Neurophysiol 96:1569-80 [Journal] [PubMed]

   DBS of a multi-compartment model of subthalamic nucleus projection neurons (Miocinovic et al. 2006) [Model]

Miyasho T, Takagi H, Suzuki H, Watanabe S, Inoue M, Kudo Y, Miyakawa H (2001) Low-threshold potassium channels and a low-threshold calcium channel regulate Ca2+ spike firing in the dendrites of cerebellar Purkinje neurons: a modeling study. Brain Res 891:106-15 [PubMed]

   Cerebellar purkinje cell: K and Ca channels regulate APs (Miyasho et al 2001) [Model]

Mo CH, Gu M, Koch C (2004) A learning rule for local synaptic interactions between excitation and shunting inhibition. Neural Comput 16:2507-32 [Journal] [PubMed]

Mo CH, Koch C (2003) Modeling reverse-phi motion-selective neurons in cortex: double synaptic-veto mechanism. Neural Comput 15:735-59 [Journal] [PubMed]

Moffitt MA, McIntyre CC, Grill WM (2004) Prediction of myelinated nerve fiber stimulation thresholds: limitations of linear models. IEEE Trans Biomed Eng 51:229-36 [Journal] [PubMed]

Mohapatra DP, Misonou H, Pan SJ, Held JE, Surmeier DJ, Trimmer JS (2009) Regulation of intrinsic excitability in hippocampal neurons by activity-dependent modulation of the KV2.1 potassium channel. Channels (Austin) 3:46-56 [Journal] [PubMed]

Mondragón-González SL, Burguière E (2017) Bio-inspired benchmark generator for extracellular multi-unit recordings. Sci Rep 7:43253 [Journal] [PubMed]

Moraud EM, Capogrosso M, Formento E, Wenger N, DiGiovanna J, Courtine G, Micera S (2016) Mechanisms Underlying the Neuromodulation of Spinal Circuits for Correcting Gait and Balance Deficits after Spinal Cord Injury. Neuron 89:814-28 [Journal] [PubMed]

   Muscle spindle feedback circuit (Moraud et al, 2016) [Model]

Morgan RJ, Soltesz I (2008) Nonrandom connectivity of the epileptic dentate gyrus predicts a major role for neuronal hubs in seizures. Proc Natl Acad Sci U S A 105:6179-84 [Journal] [PubMed]

   Dentate gyrus (Morgan et al. 2007, 2008, Santhakumar et al. 2005, Dyhrfjeld-Johnsen et al. 2007) [Model]

Moriyoshi Y, Takeuchi T (1991) [Exocrine pancreatic function tests]. Rinsho Byori Suppl 89:49-57 [PubMed]

Morrison A, Mehring C, Geisel T, Aertsen AD, Diesmann M (2005) Advancing the boundaries of high-connectivity network simulation with distributed computing. Neural Comput 17:1776-801 [Journal] [PubMed]

Mörschel K, Breit M, Queisser G (2017) Generating Neuron Geometries for Detailed Three-Dimensional Simulations Using AnaMorph. Neuroinformatics 15:247-269 [Journal] [PubMed]

   Generating neuron geometries for detailed 3D simulations using AnaMorph (Morschel et al 2017) [Model]

Morse TM (2008) ModelDB in computational neuroscience education - a research tool as interactive educational media. Brains Minds Media, Lorenz S, Egelhaaf M, ed. pp.bmm1409 [Journal] [PubMed]

Morse TM, Carnevale NT, Mutalik PG, Migliore M, Shepherd GM (2010) Abnormal Excitability of Oblique Dendrites Implicated in Early Alzheimer's: A Computational Study. Front Neural Circuits [Journal] [PubMed]

   Amyloid beta (IA block) effects on a model CA1 pyramidal cell (Morse et al. 2010) [Model]

Moubarak E, Engel D, Dufour MA, Tapia M, Tell F, Goaillard JM (2019) Robustness to Axon Initial Segment Variation Is Explained by Somatodendritic Excitability in Rat Substantia Nigra Dopaminergic Neurons. J Neurosci 39:5044-5063 [Journal] [PubMed]

   Dopaminergic subtantia nigra neuron (Moubarak et al 2019) [Model]

Mourdoukoutas AP, Truong DQ, Adair DK, Simon BJ, Bikson M (2018) High-Resolution Multi-Scale Computational Model for Non-Invasive Cervical Vagus Nerve Stimulation. Neuromodulation 21:261-268 [Journal] [PubMed]

Muller E, Buesing L, Schemmel J, Meier K (2007) Spike-frequency adapting neural ensembles: beyond mean adaptation and renewal theories. Neural Comput 19:2958-3010 [Journal] [PubMed]

Murphy BK, Miller KD (2003) Multiplicative gain changes are induced by excitation or inhibition alone. J Neurosci 23:10040-51 [PubMed]

Narayanan R, Chattarji S (2010) Computational analysis of the impact of chronic stress on intrinsic and synaptic excitability in the hippocampus. J Neurophysiol 103:3070-83 [Journal] [PubMed]

   Impact of dendritic atrophy on intrinsic and synaptic excitability (Narayanan & Chattarji, 2010) [Model]

Nenadic Z, Burdick JW (2006) A control algorithm for autonomous optimization of extracellular recordings. IEEE Trans Biomed Eng 53:941-55 [Journal] [PubMed]

Neubig M, Destexhe A (1999) Low threshold calcium T-current IV curve geometry is alterable through the distribution of T-channels in thalamic relay neurons Neurocomputing 26-27:215-221

Neubig M, Destexhe A (2000) The dendritic organization of thalamocortical relay neurons and the dual functions of their inhibitory synaptic input Thalamus Regul Syst

Neymotin S, Uhlrich DJ, Manning KA, Lytton WW (2008) Data mining of time-domain features from neural extracellular field data Applic. of Comput. Intel. in Bioinf. and Biomed.: Current Trends and Open Problems 151:119-140 [Journal]

   NEURON interfaces to MySQL and the SPUD feature extraction algorithm (Neymotin et al. 2008) [Model]

Neymotin SA, Lazarewicz MT, Sherif M, Contreras D, Finkel LH, Lytton WW (2011) Ketamine disrupts ? modulation of ? in a computer model of hippocampus. J Neurosci 31:11733-43 [Journal] [PubMed]

   Ketamine disrupts theta modulation of gamma in a computer model of hippocampus (Neymotin et al 2011) [Model]

Nicholson DA, Trana R, Katz Y, Kath WL, Spruston N, Geinisman Y (2006) Distance-dependent differences in synapse number and AMPA receptor expression in hippocampal CA1 pyramidal neurons. Neuron 50:431-42 [Journal] [PubMed]

O'Connor S, Angelo K, Jacob TJC (2012) Burst firing versus synchrony in a gap junction connected olfactory bulb mitral cell network model Frontiers in Computational Neuroscience 6:75:1-18 [Journal] [PubMed]

   Olfactory bulb mitral cell gap junction NN model: burst firing and synchrony (O`Connor et al. 2012) [Model]

Ohana O, Sakmann B (1998) Transmitter release modulation in nerve terminals of rat neocortical pyramidal cells by intracellular calcium buffers. J Physiol 513 ( Pt 1):135-48 [PubMed]

Oltedal L, Mørkve SH, Veruki ML, Hartveit E (2007) Patch-clamp investigations and compartmental modeling of rod bipolar axon terminals in an in vitro thin-slice preparation of the mammalian retina. J Neurophysiol 97:1171-87 [Journal] [PubMed]

   Recording from rod bipolar axon terminals in situ (Oltedal et al 2007) [Model]

Orio P, Parra A, Madrid R, González O, Belmonte C, Viana F (2012) Role of Ih in the firing pattern of mammalian cold thermoreceptor endings. J Neurophysiol 108:3009-23 [Journal] [PubMed]

   Role of Ih in firing patterns of cold thermoreceptors (Orio et al., 2012) [Model]

Ostroumov K (2007) A new stochastic tridimensional model of neonatal rat spinal motoneuron for investigating compartmentalization of neuronal conductances and their influence on firing. J Neurosci Methods 163:362-72 [Journal] [PubMed]

   Stochastic 3D model of neonatal rat spinal motoneuron (Ostroumov 2007) [Model]

Overstreet CK, Klein JD, Helms Tillery SI (2013) Computational modeling of direct neuronal recruitment during intracortical microstimulation in somatosensory cortex. J Neural Eng 10:066016 [Journal] [PubMed]

   Direct recruitment of S1 pyramidal cells and interneurons via ICMS (Overstreet et al., 2013) [Model]

Ovsepian SV, Steuber V, Le Berre M, O'Hara L, O'Leary VB, Dolly JO (2013) A defined heteromeric KV1 channel stabilizes the intrinsic pacemaking and regulates the output of deep cerebellar nuclear neurons to thalamic targets. J Physiol 591:1771-91 [Journal] [PubMed]

   KV1 channel governs cerebellar output to thalamus (Ovsepian et al. 2013) [Model]

Ozer M, Graham LJ, Erkaymaz O, Uzuntarla M (2007) Impact of synaptic noise and conductance state on spontaneous cortical firing. Neuroreport 18:1371-4 [Journal] [PubMed]

Padmashri R, Ganguly A, Mondal PP, Rajan K, Sikdar SK (2006) Kynurenate treatment of autaptic hippocampal microcultures affect localized voltage-dependent calcium diffusion in the dendrites. Cell Calcium 39:247-58 [Journal] [PubMed]

Palmer LM, Stuart GJ (2009) Membrane potential changes in dendritic spines during action potentials and synaptic input. J Neurosci 29:6897-903 [Journal] [PubMed]

   Membrane potential changes in dendritic spines during APs and synaptic input (Palmer & Stuart 2009) [Model]

Parasuram H, Nair B, D'Angelo E, Hines M, Naldi G, Diwakar S (2016) Computational Modeling of Single Neuron Extracellular Electric Potentials and Network Local Field Potentials using LFPsim. Front Comput Neurosci 10:65 [Journal] [PubMed]

   Modeling single neuron LFPs and extracellular potentials with LFPsim (Parasuram et al. 2016) [Model]

Parekh R, Ascoli GA (2013) Neuronal morphology goes digital: a research hub for cellular and system neuroscience. Neuron 77:1017-38 [Journal] [PubMed]

   Neuronal morphology goes digital ... (Parekh & Ascoli 2013) [Model]

Perreault MC, Raastad M (2006) Contribution of morphology and membrane resistance to integration of fast synaptic signals in two thalamic cell types. J Physiol 577:205-20 [Journal] [PubMed]

Poirazi P, Brannon T, Mel BW (2003) Arithmetic of subthreshold synaptic summation in a model CA1 pyramidal cell. Neuron 37:977-87 [PubMed]

   CA1 pyramidal neuron: as a 2-layer NN and subthreshold synaptic summation (Poirazi et al 2003) [Model]

Poirazi P, Brannon T, Mel BW (2003) Pyramidal neuron as two-layer neural network. Neuron 37:989-99 [PubMed]

   CA1 pyramidal neuron: as a 2-layer NN and subthreshold synaptic summation (Poirazi et al 2003) [Model]

Poirazi P, Brannon T, Mel BW (2003ab-sup) Online Supplement: About the Model Neuron 37 Online:1-20 [Journal]

   CA1 pyramidal neuron: as a 2-layer NN and subthreshold synaptic summation (Poirazi et al 2003) [Model]

Poleg-Polsky A, Diamond JS (2011) Imperfect Space Clamp Permits Electrotonic Interactions between Inhibitory and Excitatory Synaptic Conductances, Distorting Voltage Clamp Recordings. PLoS ONE 6(4):e119463-. [Journal]

   Interacting synaptic conductances during, distorting, voltage clamp (Poleg-Polsky and Diamond 2011) [Model]

Poolos NP, Migliore M, Johnston D (2002) Pharmacological upregulation of h-channels reduces the excitability of pyramidal neuron dendrites. Nat Neurosci 5:767-74 [Journal] [PubMed]

   CA1 pyramidal neuron: effects of Lamotrigine on dendritic excitability (Poolos et al 2002) [Model]

Popovic MA, Gao X, Carnevale NT, Zecevic D (2014) Cortical dendritic spine heads are not electrically isolated by the spine neck from membrane potential signals in parent dendrites. Cereb Cortex 24:385-95 [Journal] [PubMed]

Pospischil M, Piwkowska Z, Bal T, Destexhe A (2009) Extracting synaptic conductances from single membrane potential traces. Neuroscience 158:545-52 [Journal] [PubMed]

   Python demo of the VmT method to extract conductances from single Vm traces (Pospischil et al. 2009) [Model]

Pospischil M, Piwkowska Z, Rudolph M, Bal T, Destexhe A (2007) Calculating event-triggered average synaptic conductances from the membrane potential. J Neurophysiol 97:2544-52 [Journal] [PubMed]

   Code to calc. spike-trig. ave (STA) conduct. from Vm (Pospischil et al. 2007, Rudolph et al. 2007) [Model]

Pospischil M, Toledo-Rodriguez M, Monier C, Piwkowska Z, Bal T, Frégnac Y, Markram H, Destexhe A (2008) Minimal Hodgkin-Huxley type models for different classes of cortical and thalamic neurons. Biol Cybern 99:427-41 [Journal] [PubMed]

   Hodgkin-Huxley models of different classes of cortical neurons (Pospischil et al. 2008) [Model]

Postlethwaite M, Hennig MH, Steinert JR, Graham BP, Forsythe ID (2007) Acceleration of AMPA receptor kinetics underlies temperature-dependent changes in synaptic strength at the rat calyx of Held. J Physiol 579:69-84 [PubMed]

   Modeling temperature changes in AMPAR kinetics (Postlethwaite et al 2007) [Model]

Pouille F, McTavish TS, Hunter LE, Restrepo D, Schoppa NE (2017) Intraglomerular gap junctions enhance interglomerular synchrony in a sparsely connected olfactory bulb network. J Physiol 595:5965-5986 [Journal] [PubMed]

Prescott SA, De Koninck Y (2005) Integration time in a subset of spinal lamina I neurons is lengthened by sodium and calcium currents acting synergistically to prolong subthreshold depolarization. J Neurosci 25:4743-54 [Journal] [PubMed]

   Tonic neuron in spinal lamina I: prolongation of subthreshold depol. (Prescott and De Koninck 2005) [Model]

Prescott SA, Sejnowski TJ, De Koninck Y (2006) Reduction of anion reversal potential subverts the inhibitory control of firing rate in spinal lamina I neurons: towards a biophysical basis for neuropathic pain. Mol Pain 2:32 [Journal] [PubMed]

Proddutur A, Yu J, Elgammal FS, Santhakumar V (2013) Seizure-induced alterations in fast-spiking basket cell GABA currents modulate frequency and coherence of gamma oscillation in network simulations. Chaos 23:046109 [Journal] [PubMed]

   Basket cell extrasynaptic inhibition modulates network oscillations (Proddutur et al., 2013) [Model]

Publio R, Oliveira RF, Roque AC (2006) A realistic model of rod photoreceptor for use in a retina network model Neurocomputing 69:1020-1024 [Journal]

   Rod photoreceptor (Barnes and Hille 1989, Publio et al. 2006, Kourennyi and Liu et al. 2004) [Model]

Publio R, Oliveira RF, Roque AC (2009) A computational study on the role of gap junctions and rod Ih conductance in the enhancement of the dynamic range of the retina. PLoS One 4:e6970 [Journal] [PubMed]

   A network model of the vertebrate retina (Publio et al. 2009) [Model]

Radecki DZ, Johnson EL, Brown AK, Meshkin NT, Perrine SA, Gow A (2018) Corticohippocampal Dysfunction In The OBiden Mouse Model Of Primary Oligodendrogliopathy. Sci Rep 8:16116 [Journal] [PubMed]

Remme MWH, Rinzel J, Schreiber S (2018) Function and energy consumption constrain neuronal biophysics in a canonical computation: Coincidence detection. PLoS Comput Biol 14:e1006612 [Journal] [PubMed]

   Function and energy constrain neuronal biophysics in coincidence detection (Remme et al 2018) [Model]

Richert M, Nageswaran JM, Dutt N, Krichmar JL (2011) An efficient simulation environment for modeling large-scale cortical processing. Front Neuroinform 5:19 [Journal] [PubMed]

   Efficient simulation environment for modeling large-scale cortical processing (Richert et al. 2011) [Model]

Romani A, Marchetti C, Bianchi D, Leinekugel X, Poirazi P, Migliore M, Marie H (2013) Computational modeling of the effects of amyloid-beta on release probability at hippocampal synapses. Front Comput Neurosci 7:1 [Journal] [PubMed]

   Amyloid-beta effects on release probability and integration at CA3-CA1 synapses (Romani et al. 2013) [Model]

Ros E, Carrillo R, Ortigosa EM, Barbour B, Agís R (2006) Event-driven simulation scheme for spiking neural networks using lookup tables to characterize neuronal dynamics. Neural Comput 18:2959-93 [Journal] [PubMed]

Roth A, Häusser M (2001) Compartmental models of rat cerebellar Purkinje cells based on simultaneous somatic and dendritic patch-clamp recordings. J Physiol 535:445-72 [PubMed]

Rubin DB, Cleland TA (2006) Dynamical mechanisms of odor processing in olfactory bulb mitral cells. J Neurophysiol 96:555-68 [Journal] [PubMed]

   Dynamical model of olfactory bulb mitral cell (Rubin, Cleland 2006) [Model]

Rudolph M, Destexhe A (2001) Do neocortical pyramidal neurons display stochastic resonance? J Comput Neurosci 11:19-42 [PubMed]

Rudolph M, Destexhe A (2003) Tuning neocortical pyramidal neurons between integrators and coincidence detectors. J Comput Neurosci 14:239-51 [PubMed]

Rudolph M, Destexhe A (2003) Characterization of subthreshold voltage fluctuations in neuronal membranes. Neural Comput 15:2577-618 [Journal] [PubMed]

Rudolph M, Destexhe A (2003) A fast-conducting, stochastic integrative mode for neocortical neurons in vivo. J Neurosci 23:2466-76 [PubMed]

Rudolph M, Destexhe A (2003) The discharge variability of neocortical neurons during high-conductance states. Neuroscience 119:855-73 [PubMed]

Rudolph M, Destexhe A (2004) Inferring network activity from synaptic noise. J Physiol Paris 98:452-66 [Journal] [PubMed]

Rudolph M, Destexhe A (2005) An extended analytic expression for the membrane potential distribution of conductance-based synaptic noise. Neural Comput 17:2301-15 [Journal] [PubMed]

   Steady-state Vm distribution of neurons subject to synaptic noise (Rudolph, Destexhe 2005) [Model]

Rudolph M, Destexhe A (2006) Event-based simulation strategy for conductance-based synaptic interactions and plasticity Neurocomputing 69:1130-1133

Rudolph M, Destexhe A (2006) On the use of analytical expressions for the voltage distribution to analyze intracellular recordings. Neural Comput 18:2917-22 [Journal] [PubMed]

Rudolph M, Destexhe A (2006) Analytical integrate-and-fire neuron models with conductance-based dynamics for event-driven simulation strategies. Neural Comput 18:2146-210 [Journal] [PubMed]

Rudolph M, Pospischil M, Timofeev I, Destexhe A (2007) Inhibition determines membrane potential dynamics and controls action potential generation in awake and sleeping cat cortex. J Neurosci 27:5280-90 [Journal] [PubMed]

   Code to calc. spike-trig. ave (STA) conduct. from Vm (Pospischil et al. 2007, Rudolph et al. 2007) [Model]

Rumsey CC, Abbott LF (2004) Synaptic equalization by anti-STDP Neurocomputing 58:359-364 [PubMed]

Rumsey CC, Abbott LF (2004) Equalization of synaptic efficacy by activity- and timing-dependent synaptic plasticity. J Neurophysiol 91:2273-80 [Journal] [PubMed]

Safronov BV, Wolff M, Vogel W (2000) Excitability of the soma in central nervous system neurons. Biophys J 78:2998-3010 [Journal] [PubMed]

   Excitability of the soma in central nervous system neurons (Safronov et al 2000) [Model]

Saghatelyan A, Roux P, Migliore M, Rochefort C, Desmaisons D, Charneau P, Shepherd GM, Lledo PM (2005) Activity-dependent adjustments of the inhibitory network in the olfactory bulb following early postnatal deprivation. Neuron 46:103-16 [Journal] [PubMed]

   Olfactory bulb granule cell: effects of odor deprivation (Saghatelyan et al 2005) [Model]

Sangrey TD, Friesen WO, Levy WB (2004) Analysis of the optimal channel density of the squid giant axon using a reparameterized Hodgkin-Huxley model. J Neurophysiol 91:2541-50 [Journal] [PubMed]

Santhakumar V, Aradi I, Soltesz I (2005) Role of mossy fiber sprouting and mossy cell loss in hyperexcitability: a network model of the dentate gyrus incorporating cell types and axonal topography. J Neurophysiol 93:437-53 [Journal] [PubMed]

   Dentate gyrus network model (Santhakumar et al 2005) [Model]
   Dentate gyrus (Morgan et al. 2007, 2008, Santhakumar et al. 2005, Dyhrfjeld-Johnsen et al. 2007) [Model]

Saraga F, Ng L, Skinner FK (2006) Distal gap junctions and active dendrites can tune network dynamics. J Neurophysiol 95:1669-82 [Journal] [PubMed]

   Hippocampal basket cell gap junction network dynamics (Saraga et al. 2006) [Model]

Saraga F, Skinner FK (2002) Dynamics and diversity in interneurons: a model exploration with slowly inactivating potassium currents. Neuroscience 113:193-203 [PubMed]

Saraga F, Skinner FK (2003) Spike initiation in a hippocampal interneuron model Neurocomputing 52-4:185-189

Saraga F, Skinner FK (2004) Location, location, location (and density) of gap junctions in multi-compartment models. Neurocomputing 58-60:713-719 [Journal]

Saraga F, Wu CP, Zhang L, Skinner FK (2003) Active dendrites and spike propagation in multi-compartment models of oriens-lacunosum/moleculare hippocampal interneurons. J Physiol 552:673-89 [Journal] [PubMed]

   Active dendrites and spike propagation in a hippocampal interneuron (Saraga et al 2003) [Model]

Saraga F, Zhang XL, Zhang L, Carlen PL, Skinner FK (2006) Exploring gap junction location and density in electrically coupled hippocampal oriens interneurons Neurocomputing 69:1048-1052

Saudargiene A, Cobb S, Graham BP (2015) A computational study on plasticity during theta cycles at Schaffer collateral synapses on CA1 pyramidal cells in the hippocampus. Hippocampus 25:208-18 [Journal] [PubMed]

   CA1 pyramidal neuron: synaptic plasticity during theta cycles (Saudargiene et al. 2015) [Model]

Schaefer AT, Helmstaedter M, Sakmann B, Korngreen A (2003) Correction of conductance measurements in non-space-clamped structures: 1. Voltage-gated K+ channels. Biophys J 84:3508-28 [Journal] [PubMed]

   Correcting space clamp in dendrites (Schaefer et al. 2003 and 2007) [Model]

Schaefer AT, Helmstaedter M, Schmitt AC, Bar-Yehuda D, Almog M, Ben-Porat H, Sakmann B, Korngreen A (2007) Dendritic voltage-gated K+ conductance gradient in pyramidal neurones of neocortical layer 5B from rats. J Physiol 579:737-52 [Journal] [PubMed]

   Correcting space clamp in dendrites (Schaefer et al. 2003 and 2007) [Model]

Schaefer AT, Larkum ME, Sakmann B, Roth A (2003) Coincidence detection in pyramidal neurons is tuned by their dendritic branching pattern. J Neurophysiol 89:3143-54 [Journal] [PubMed]

   Pyramidal neuron coincidence detection tuned by dendritic branching pattern (Schaefer et al 2003) [Model]

Schiller J, Major G, Koester HJ, Schiller Y (2000) NMDA spikes in basal dendrites of cortical pyramidal neurons. Nature 404:285-9 [Journal] [PubMed]

Schoppa NE, Westbrook GL (2002) AMPA autoreceptors drive correlated spiking in olfactory bulb glomeruli. Nat Neurosci 5:1194-202 [Journal] [PubMed]

Schulz JM, Knoflach F, Hernandez MC, Bischofberger J (2018) Dendrite-targeting interneurons control synaptic NMDA-receptor activation via nonlinear a5-GABAA receptors. Nat Commun 9:3576 [Journal] [PubMed]

   CA1 pyramidal neuron: nonlinear a5-GABAAR controls synaptic NMDAR activation (Schulz et al 2018) [Model]
   Single compartment: nonlinear a5-GABAAR controls synaptic NMDAR activation (Schulz et al 2018) [Model]

Scorcioni R, Lazarewicz MT, Ascoli GA (2004) Quantitative morphometry of hippocampal pyramidal cells: differences between anatomical classes and reconstructing laboratories. J Comp Neurol 473:177-93 [Journal] [PubMed]

Segev I, London M (2000) Untangling dendrites with quantitative models. Science 290:744-50 [PubMed]

Shah MM, Migliore M, Brown DA (2011) Differential effects of Kv7 (M-) channels on synaptic integration in distinct subcellular compartments of rat hippocampal pyramidal neurons. J Physiol 589:6029-38 [Journal] [PubMed]

   CA1 pyramidal neurons: effects of Kv7 (M-) channels on synaptic integration (Shah et al. 2011) [Model]

Shao J, Tsao TH, Butera R (2006) Bursting without slow kinetics: a role for a small world? Neural Comput 18:2029-35 [Journal] [PubMed]

Shao LR, Halvorsrud R, Borg-Graham L, Storm JF (1999) The role of BK-type Ca2+-dependent K+ channels in spike broadening during repetitive firing in rat hippocampal pyramidal cells. J Physiol 521 Pt 1:135-46 [PubMed]

Shen GY, Chen WR, Midtgaard J, Shepherd GM, Hines ML (1999) Computational analysis of action potential initiation in mitral cell soma and dendrites based on dual patch recordings. J Neurophysiol 82:3006-20 [Journal] [PubMed]

   Action potential initiation in the olfactory mitral cell (Shen et al 1999) [Model]

Shen W, Hernandez-Lopez S, Tkatch T, Held JE, Surmeier DJ (2004) Kv1.2-containing K+ channels regulate subthreshold excitability of striatal medium spiny neurons. J Neurophysiol 91:1337-49 [Journal] [PubMed]

Sherfey JS, Soplata AE, Ardid S, Roberts EA, Stanley DA, Pittman-Polletta BR, Kopell NJ (2018) DynaSim: A MATLAB Toolbox for Neural Modeling and Simulation. Front Neuroinform 12:10 [Journal] [PubMed]

   DynaSim: a MATLAB toolbox for neural modeling and simulation (Sherfey et al 2018) [Model]

Shimazaki R, Boccaccio A, Mazzatenta A, Pinato G, Migliore M, Menini A (2006) Electrophysiological properties and modeling of murine vomeronasal sensory neurons in acute slice preparations. Chem Senses 31:425-35 [Journal] [PubMed]

   Vomeronasal sensory neuron (Shimazaki et al 2006) [Model]

Shu Y, Duque A, Yu Y, Haider B, McCormick DA (2007) Properties of action-potential initiation in neocortical pyramidal cells: evidence from whole cell axon recordings. J Neurophysiol 97:746-60 [Journal] [PubMed]

   Intracortical synaptic potential modulation by presynaptic somatic potential (Shu et al. 2006, 2007) [Model]

Sidiropoulou K, Joels M, Poirazi P (2007) Modeling stress-induced adaptations in Ca2+ dynamics Neurocomputing 70:1640-1644 [Journal]

Sidiropoulou K, Poirazi P (2012) Predictive features of persistent activity emergence in regular spiking and intrinsic bursting model neurons. PLoS Comput Biol 8:e1002489 [Journal] [PubMed]

   Layer V PFC pyramidal neuron used to study persistent activity (Sidiropoulou & Poirazi 2012) [Model]

Sikora MA, Gottesman J, Miller RF (2005) A computational model of the ribbon synapse. J Neurosci Methods 145:47-61 [Journal] [PubMed]

   Ribbon Synapse (Sikora et al 2005) [Model]

Simon JZ, Carr CE, Shamma SA (1999) A Dendritic Model of Coincidence Detection in the Avian Brainstem. Neurocomputing 26-27:263-9 [Journal]

   Coincidence detection in avian brainstem (Simon et al 1999) [Model]

Siu D (2004) Activity-dependent hepatocyte growth factor expression and its role in organogenesis and cancer growth suppression. Med Hypotheses 63:62-70 [Journal] [PubMed]

Sohal VS, Cox CL, Huguenard JR (1998) Localization of CCK receptors in thalamic reticular neurons: a modeling study. J Neurophysiol 79:2820-4 [Journal] [PubMed]

Sohal VS, Huguenard JR (1998) Long-range connections synchronize rather than spread intrathalamic oscillations: computational modeling and in vitro electrophysiology. J Neurophysiol 80:1736-51 [Journal] [PubMed]

Sohal VS, Huguenard JR (2002) Reciprocal inhibition controls the oscillatory state in thalamic networks Neurocomputing 44:653-659

Sohal VS, Huguenard JR (2003) Inhibitory interconnections control burst pattern and emergent network synchrony in reticular thalamus. J Neurosci 23:8978-88 [PubMed]

Sohal VS, Huguenard JR (2005) Inhibitory coupling specifically generates emergent gamma oscillations in diverse cell types. Proc Natl Acad Sci U S A 102:18638-43 [Journal] [PubMed]

Sohal VS, Huntsman MM, Huguenard JR (2000) Reciprocal inhibitory connections regulate the spatiotemporal properties of intrathalamic oscillations. J Neurosci 20:1735-45 [PubMed]

Sohal VS, Huntsman MM, Huguenard JR (2000) Reciprocal inhibitory connections produce desynchronizing phase lags during intrathalamic oscillations Neurocomputing 32:509-516

Somjen GG (2001) Mechanisms of spreading depression and hypoxic spreading depression-like depolarization. Physiol Rev 81:1065-96 [Journal] [PubMed]

Somjen GG, Kager H, Wadman WJ (2009) Calcium sensitive non-selective cation current promotes seizure-like discharges and spreading depression in a model neuron. J Comput Neurosci 26:139-47 [Journal] [PubMed]

Song D, Wang Z, Berger TW (2002) Contribution of T-type VDCC to TEA-induced long-term synaptic modification in hippocampal CA1 and dentate gyrus. Hippocampus 12:689-97 [Journal] [PubMed]

Song W, Xiao Y, Chen H, Ashpole NM, Piekarz AD, Ma P, Hudmon A, Cummins TR, Shou W (2012) The human Nav1.5 F1486 deletion associated with long QT syndrome leads to impaired sodium channel inactivation and reduced lidocaine sensitivity. J Physiol 590:5123-39 [Journal] [PubMed]

Sousa M, Szucs P, Lima D, Aguiar P (2014) The pronociceptive dorsal reticular nucleus contains mostly tonic neurons and shows a high prevalence of spontaneous activity in block preparation. J Neurophysiol 111:1507-18 [Journal] [PubMed]

   DRt neuron model (Sousa et al., 2014) [Model]

Spera E, Migliore M, Unsworth N, Tegolo D (2016) On the cellular mechanisms underlying working memory capacity in humans Neural Network World 4:335-359 [Journal]

   Model of CA1 activity during working memory task (Spera et al. 2016) [Model]

Spiga S, Lintas A, Migliore M, Diana M (2010) Altered architecture and functional consequences of the mesolimbic dopamine system in cannabis dependence. Addict Biol 15:266-76 [Journal] [PubMed]

   NAcc medium spiny neuron: effects of cannabinoid withdrawal (Spiga et al. 2010) [Model]

Spirou GA, Rager J, Manis PB (2005) Convergence of auditory-nerve fiber projections onto globular bushy cells. Neuroscience 136:843-63 [Journal] [PubMed]

Stacey WC, Krieger A, Litt B (2011) Network recruitment to coherent oscillations in a hippocampal computer model. J Neurophysiol 105:1464-81 [Journal] [PubMed]

   Network recruitment to coherent oscillations in a hippocampal model (Stacey et al. 2011) [Model]

Stacey WC, Lazarewicz MT, Litt B (2009) Synaptic noise and physiological coupling generate high-frequency oscillations in a hippocampal computational model. J Neurophysiol 102:2342-57 [Journal] [PubMed]

   High frequency oscillations in a hippocampal computational model (Stacey et al. 2009) [Model]

Steephen JE, Manchanda R (2009) Differences in biophysical properties of nucleus accumbens medium spiny neurons emerging from inactivation of inward rectifying potassium currents. J Comput Neurosci 27:453-70 [Journal] [PubMed]

   Effects of KIR current inactivation in NAc Medium Spiny Neurons (Steephen and Manchanda 2009) [Model]

Steinmetz PN, Manwani A, Koch C, London M, Segev I (2000) Subthreshold voltage noise due to channel fluctuations in active neuronal membranes. J Comput Neurosci 9:133-48 [PubMed]

Sterratt D, Graham B, Gillies A, Willshaw D (2011) Principles of Computational Modelling in Neuroscience, Cambridge University Press :1-401 [Journal]

   Principles of Computational Modelling in Neuroscience (Book) (Sterratt et al. 2011) [Model]

Sterratt DC, van Ooyen A (2004) Does a dendritic democracy need a ruler? Neurocomputing 58:437-442 [Journal]

Steuber V, Jaeger D (2013) Modeling the generation of output by the cerebellar nuclei. Neural Netw 47:112-9 [Journal] [PubMed]

   Robust transmission in the inhibitory Purkinje Cell to Cerebellar Nuclei pathway (Abbasi et al 2017) [Model]

Stiefel KM, Gutkin BS, Sejnowski TJ (2009) The effects of cholinergic neuromodulation on neuronal phase-response curves of modeled cortical neurons. J Comput Neurosci 26:289-301 [Journal] [PubMed]

   Cortical pyramidal neuron, phase response curve (Stiefel et al 2009) [Model]

Stiefel KM, Sejnowski TJ (2007) Mapping function onto neuronal morphology. J Neurophysiol 98:513-26 [Journal] [PubMed]

   Mapping function onto neuronal morphology (Stiefel and Sejnowski 2007) [Model]

Stiefel KM, Wespatat V, Singer W, Tennigkeit F (2001) A computational model of the interaction of membrane potential oscillations with inhibitory synaptic input in cortical cells Neurocomputing 38:389-395

Stuart G, Spruston N (1998) Determinants of voltage attenuation in neocortical pyramidal neuron dendrites. J Neurosci 18:3501-10 [PubMed]

   Pyramidal Neuron Deep: attenuation in dendrites (Stuart, Spruston 1998) [Model]

Stuart GJ, Häusser M (2001) Dendritic coincidence detection of EPSPs and action potentials. Nat Neurosci 4:63-71 [Journal] [PubMed]

Sun Q, Srinivas KV, Sotayo A, Siegelbaum SA (2014) Dendritic Na+ spikes enable cortical input to drive action potential output from hippocampal CA2 pyramidal neurons. Elife [Journal] [PubMed]

Sundt D, Gamper N, Jaffe DB (2015) Spike propagation through the dorsal root ganglia in an unmyelinated sensory neuron: a modeling study. J Neurophysiol 114:3140-53 [Journal] [PubMed]

   A model of the T-junction of a C-fiber sensory neuron (Sundt et al. 2015) [Model]

Takagi H, Kawasaki M (2003) Modeling of time disparity detection by the Hodgkin-Huxley equations. J Comp Physiol A Neuroethol Sens Neural Behav Physiol 189:257-62 [Journal] [PubMed]

Tejada J, Arisi GM, García-Cairasco N, Roque AC (2012) Morphological alterations in newly born dentate gyrus granule cells that emerge after status epilepticus contribute to make them less excitable. PLoS One 7:e40726 [Journal] [PubMed]

   Dentate gyrus network model (Tejada et al 2014) [Model]

Teka W, Stockton D, Santamaria F (2016) Power-law dynamics of membrane conductances increase spiking diversity in a Hodgkin-Huxley model PLoS Comput Biol 12(3):e1004776 [Journal]

   Hodgkin–Huxley model with fractional gating (Teka et al. 2016) [Model]

Telenczuk M, Brette R, Destexhe A, Telenczuk B (2018) Contribution of the Axon Initial Segment to Action Potentials Recorded Extracellularly. eNeuro [Journal] [PubMed]

   Contribution of the axon initial segment to APs recorded extracellularly (Telenczuk et al 2018) [Model]

Telenczuk M, Fontaine B, Brette R (2017) The basis of sharp spike onset in standard biophysical models. PLoS One 12:e0175362 [Journal] [PubMed]

   The basis of sharp spike onset in standard biophysical models (Telenczuk et al 2017) [Model]

Thomson AM, Destexhe A (1999) Dual intracellular recordings and computational models of slow inhibitory postsynaptic potentials in rat neocortical and hippocampal slices. Neuroscience 92:1193-215 [PubMed]

Tiesinga PH, Fellous JM, José JV, Sejnowski TJ (2001) Computational model of carbachol-induced delta, theta, and gamma oscillations in the hippocampus. Hippocampus 11:251-74 [Journal] [PubMed]

Tikidji-Hamburyan RA, Martínez JJ, White JA, Canavier CC (2015) Resonant Interneurons Can Increase Robustness of Gamma Oscillations. J Neurosci 35:15682-95 [Journal] [PubMed]

   PIR gamma oscillations in network of resonators (Tikidji-Hamburyan et al. 2015) [Model]

Tikidji-Hamburyan RA, Narayana V, Bozkus Z, El-Ghazawi TA (2017) Software for Brain Network Simulations: A Comparative Study Front. Neuroinform. [Journal]

   Brain networks simulators - a comparative study (Tikidji-Hamburyan et al 2017) [Model]

Tomsett RJ, Ainsworth M, Thiele A, Sanayei M, Chen X, Gieselmann MA, Whittington MA, Cunningham MO, Kaiser M (2015) Virtual Electrode Recording Tool for EXtracellular potentials (VERTEX): comparing multi-electrode recordings from simulated and biological mammalian cortical tissue. Brain Struct Funct 220:2333-53 [Journal] [PubMed]

   Large-scale model of neocortical slice in vitro exhibiting persistent gamma (Tomsett et al. 2014) [Model]

Tort AB, Rotstein HG, Dugladze T, Gloveli T, Kopell NJ (2007) On the formation of gamma-coherent cell assemblies by oriens lacunosum-moleculare interneurons in the hippocampus. Proc Natl Acad Sci U S A 104:13490-5 [Journal] [PubMed]

   Gamma and theta rythms in biophysical models of hippocampus circuits (Kopell et al. 2011) [Model]

Traboulsie A, Chemin J, Kupfer E, Nargeot J, Lory P (2006) T-type calcium channels are inhibited by fluoxetine and its metabolite norfluoxetine. Mol Pharmacol 69:1963-8 [Journal] [PubMed]

Tsay D, Yuste R (2002) Role of dendritic spines in action potential backpropagation: a numerical simulation study. J Neurophysiol 88:2834-45 [Journal] [PubMed]

Tzilivaki A, Kastellakis G, Poirazi P (2019) Challenging the point neuron dogma: FS basket cells as 2-stage nonlinear integrators Nature Communications 10(1):3664 [Journal] [PubMed]

   Fast Spiking Basket cells (Tzilivaki et al 2019) [Model]

Urakubo H, Aihara T, Kuroda S, Watanabe M, Kondo S (2004) Spatial localization of synapses required for supralinear summation of action potentials and EPSPs. J Comput Neurosci 16:251-65 [Journal] [PubMed]

Vabnick I, Trimmer JS, Schwarz TL, Levinson SR, Risal D, Shrager P (1999) Dynamic potassium channel distributions during axonal development prevent aberrant firing patterns. J Neurosci 19:747-58 [PubMed]

van der Velden L, van Hooft JA, Chameau P (2012) Altered dendritic complexity affects firing properties of cortical layer 2/3 pyramidal neurons in mice lacking the 5-HT3A receptor. J Neurophysiol 108:1521-8 [Journal] [PubMed]

   Altered complexity in layer 2/3 pyramidal neurons (Luuk van der Velden et al. 2012) [Model]

van Elburg RA, van Ooyen A (2010) Impact of dendritic size and dendritic topology on burst firing in pyramidal cells. PLoS Comput Biol 6:e1000781 [Journal] [PubMed]

   Impact of dendritic size and topology on pyramidal cell burst firing (van Elburg and van Ooyen 2010) [Model]

van Ooyen A, Duijnhouwer J, Remme MW, van Pelt J (2002) The effect of dendritic topology on firing patterns in model neurons. Network 13:311-25 [PubMed]

van Welie I, Remme MW, van Hooft JA, Wadman WJ (2006) Different levels of Ih determine distinct temporal integration in bursting and regular-spiking neurons in rat subiculum. J Physiol 576:203-14 [Journal] [PubMed]

   Ih levels roles in bursting and regular-spiking subiculum pyramidal neurons (van Welie et al 2006) [Model]

Vetter P, Roth A, Häusser M (2001) Propagation of action potentials in dendrites depends on dendritic morphology. J Neurophysiol 85:926-37 [Journal] [PubMed]

   Dendritica (Vetter et al 2001) [Model]

Vida I, Bartos M, Jonas P (2006) Shunting inhibition improves robustness of gamma oscillations in hippocampal interneuron networks by homogenizing firing rates. Neuron 49:107-17 [Journal] [PubMed]

Wang J, Chen S, Nolan MF, Siegelbaum SA (2002) Activity-dependent regulation of HCN pacemaker channels by cyclic AMP: signaling through dynamic allosteric coupling. Neuron 36:451-61 [PubMed]

   Activity dependent regulation of pacemaker channels by cAMP (Wang et al 2002) [Model]

Wang XD, Hao J, Poo MM, Zhang XH (2006) How does a neuron perform subtraction? - Arithmetic rules of synaptic integration of excitation and inhibition Advances in Neural Networks-ISNN 2006 3971:7-14

Wang Z, Song D, Berger TW (2002) Contribution of NMDA receptor channels to the expression of LTP in the hippocampal dentate gyrus. Hippocampus 12:680-8 [Journal] [PubMed]

Warashina A (2006) Mode of mitochondrial Ca2+ clearance and its influence on secretory responses in stimulated chromaffin cells. Cell Calcium 39:35-46 [Journal] [PubMed]

Warashina A, Ogura T (2004) Modeling of stimulation-secretion coupling in a chromaffin cell. Pflugers Arch 448:161-74 [Journal] [PubMed]

Watanabe S, Hoffman DA, Migliore M, Johnston D (2002) Dendritic K+ channels contribute to spike-timing dependent long-term potentiation in hippocampal pyramidal neurons. Proc Natl Acad Sci U S A 99:8366-71 [Journal] [PubMed]

   CA1 pyramidal neuron: conditional boosting of dendritic APs (Watanabe et al 2002) [Model]

Weaver CM, Wearne SL (2006) The role of action potential shape and parameter constraints in optimization of compartment models Neurocomputing 69:1053-1057 [Journal]

   AP shape and parameter constraints in optimization of compartment models (Weaver and Wearne 2006) [Model]

Wenning G, Obermayer K (2003) Activity driven adaptive stochastic resonance. Phys Rev Lett 90:120602 [Journal] [PubMed]

Wetmore DZ, Mukamel EA, Schnitzer MJ (2008) Lock-and-key mechanisms of cerebellar memory recall based on rebound currents. J Neurophysiol 100:2328-47 [Journal] [PubMed]

Williams SR, Stuart GJ (2003) Role of dendritic synapse location in the control of action potential output. Trends Neurosci 26:147-54 [Journal] [PubMed]

Wilmes KA, Sprekeler H, Schreiber S (2016) Inhibition as a Binary Switch for Excitatory Plasticity in Pyramidal Neurons. PLoS Comput Biol 12:e1004768 [Journal] [PubMed]

   Inhibition of bAPs and Ca2+ spikes in a multi-compartment pyramidal neuron model (Wilmes et al 2016) [Model]

Winters BD, Jin SX, Ledford KR, Golding NL (2017) Amplitude Normalization of Dendritic EPSPs at the Soma of Binaural Coincidence Detector Neurons of the Medial Superior Olive. J Neurosci 37:3138-3149 [Journal] [PubMed]

Wissmann R, Bildl W, Oliver D, Beyermann M, Kalbitzer HR, Bentrop D, Fakler B (2003) Solution structure and function of the "tandem inactivation domain" of the neuronal A-type potassium channel Kv1.4. J Biol Chem 278:16142-50 [Journal] [PubMed]

Wolf JA, Moyer JT, Lazarewicz MT, Contreras D, Benoit-Marand M, O'Donnell P, Finkel LH (2005) NMDA/AMPA ratio impacts state transitions and entrainment to oscillations in a computational model of the nucleus accumbens medium spiny projection neuron. J Neurosci 25:9080-95 [Journal] [PubMed]

   Afferent Integration in the NAcb MSP Cell (Wolf et al. 2005) [Model]

Wolfart J, Debay D, Le Masson G, Destexhe A, Bal T (2005) Synaptic background activity controls spike transfer from thalamus to cortex. Nat Neurosci 8:1760-7 [Journal] [PubMed]

Wong AY, Graham BP, Billups B, Forsythe ID (2003) Distinguishing between presynaptic and postsynaptic mechanisms of short-term depression during action potential trains. J Neurosci 23:4868-77 [PubMed]

Wu SN (2004) Simulations of the cardiac action potential based on the Hodgkin-Huxley kinetics with the use of Microsoft Excel spreadsheets. Chin J Physiol 47:15-22 [PubMed]

   Cardiac action potential based on Luo-Rudy phase 1 model (Luo and Rudy 1991), (Wu 2004) [Model]

Xiang Z, Huguenard JR, Prince DA (2002) Synaptic inhibition of pyramidal cells evoked by different interneuronal subtypes in layer v of rat visual cortex. J Neurophysiol 88:740-50 [Journal] [PubMed]

Yamasaki T, Isokawa T, Matsui N, Ikeno H, Kanzaki R (2006) Reconstruction and simulation for three-dimensional morphological structure of insect neurons Neurocomputing 69:1043-1047

Yang GR, Murray JD, Wang XJ (2016) A dendritic disinhibitory circuit mechanism for pathway-specific gating. Nat Commun 7:12815 [Journal] [PubMed]

   A dendritic disinhibitory circuit mechanism for pathway-specific gating (Yang et al. 2016) [Model]

Yim MY, Hanuschkin A, Wolfart J (2015) Intrinsic rescaling of granule cells restores pattern separation ability of a dentate gyrus network model during epileptic hyperexcitability. Hippocampus 25:297-308 [Journal] [PubMed]

   Dentate gyrus network model pattern separation and granule cell scaling in epilepsy (Yim et al 2015) [Model]

Yin N, Yang H, Yao W, Ding G (2017) A mathematical model of histamine-mediated neural activation during acupuncture. Biomech Model Mechanobiol 16:1659-1668 [Journal] [PubMed]

Yousif NAB, Denham M (2004) Action potential backpropagation in a model thalamocortical relay cell Neurocomputing 58-60:393-400 [Journal]

Yu J, Proddutur A, Elgammal FS, Ito T, Santhakumar V (2013) Status epilepticus enhances tonic GABA currents and depolarizes GABA reversal potential in dentate fast-spiking basket cells. J Neurophysiol 109:1746-63 [Journal] [PubMed]

   Status epilepticus alters dentate basket cell tonic inhibition (Yu J et al 2013) [Model]

Yu Y, McTavish TS, Hines ML, Shepherd GM, Valenti C, Migliore M (2013) Sparse distributed representation of odors in a large-scale olfactory bulb circuit. PLoS Comput Biol 9:e1003014 [Journal] [PubMed]

   Large scale model of the olfactory bulb (Yu et al., 2013) [Model]

Yu Y, Migliore M, Hines ML, Shepherd GM (2014) Sparse coding and lateral inhibition arising from balanced and unbalanced dendrodendritic excitation and inhibition. J Neurosci 34:13701-13 [Journal] [PubMed]

Yu Y, Shu Y, McCormick DA (2008) Cortical action potential backpropagation explains spike threshold variability and rapid-onset kinetics. J Neurosci 28:7260-72 [Journal] [PubMed]

   AP back-prop. explains threshold variability and rapid rise (McCormick et al. 2007, Yu et al. 2008) [Model]

Zang Y, Dieudonné S, De Schutter E (2018) Voltage- and Branch-Specific Climbing Fiber Responses in Purkinje Cells Cell Reports 24(6):1536-1549 [Journal] [PubMed]

   Voltage- and Branch-specific Climbing Fiber Responses in Purkinje Cells (Zang et al 2018) [Model]

Zhang TC, Janik JJ, Grill WM (2014) Modeling effects of spinal cord stimulation on wide-dynamic range dorsal horn neurons: influence of stimulation frequency and GABAergic inhibition. J Neurophysiol 112:552-67 [Journal] [PubMed]

   Effects of spinal cord stimulation on WDR dorsal horn network (Zhang et al 2014) [Model]

Zheng Y, Liu P, Bai L, Trimmer JS, Bean BP, Ginty DD (2019) Deep Sequencing of Somatosensory Neurons Reveals Molecular Determinants of Intrinsic Physiological Properties Neuron [Journal]

   DRG neuron models investigate how ion channel levels regulate firing properties (Zheng et al 2019) [Model]

Zhou Y, Carney LH, Colburn HS (2005) A model for interaural time difference sensitivity in the medial superior olive: interaction of excitatory and inhibitory synaptic inputs, channel dynamics, and cellular morphology. J Neurosci 25:3046-58 [Journal] [PubMed]

   A model for interaural time difference sensitivity in the medial superior olive (Zhou et al 2005) [Model]

Zhou Y, Colburn HS (2010) A modeling study of the effects of membrane afterhyperpolarization on spike interval statistics and on ILD encoding in the lateral superior olive. J Neurophysiol 103:2355-71 [Journal] [PubMed]

   Effects of the membrane AHP on the Lateral Superior Olive (LSO) (Zhou & Colburn 2010) [Model]

Zhu JJ, Lytton WW, Xue JT, Uhlrich DJ (1999) An intrinsic oscillation in interneurons of the rat lateral geniculate nucleus. J Neurophysiol 81:702-11 [Journal] [PubMed]

   Thalamic interneuron multicompartment model (Zhu et al. 1999) [Model]

Zou Q, Bornat Y, Tomas J, Renaud S, Destexhe A (2006) Real-time simulations of networks of Hodgkin-Huxley neurons using analog circuits Neurocomputing 69:1137-1140

Zsiros V, Aradi I, Maccaferri G (2007) Propagation of postsynaptic currents and potentials via gap junctions in GABAergic networks of the rat hippocampus. J Physiol 578:527-44 [Journal] [PubMed]

Zylbertal A, Kahan A, Ben-Shaul Y, Yarom Y, Wagner S (2015) Prolonged Intracellular Na+ Dynamics Govern Electrical Activity in Accessory Olfactory Bulb Mitral Cells. PLoS Biol 13:e1002319 [Journal] [PubMed]

   AOB mitral cell: persistent activity without feedback (Zylbertal et al., 2015) [Model]

Zylbertal A, Yarom Y, Wagner S (2017) Synchronous Infra-Slow Bursting in the Mouse Accessory Olfactory Bulb Emerge from Interplay between Intrinsic Neuronal Dynamics and Network Connectivity. J Neurosci 37:2656-2672 [Journal] [PubMed]

   A network of AOB mitral cells that produces infra-slow bursting (Zylbertal et al. 2017) [Model]

Zylbertal A, Yarom Y, Wagner S (2017) The Slow Dynamics of Intracellular Sodium Concentration Increase the Time Window of Neuronal Integration: A Simulation Study Front. Comput. Neurosci. 11(85):1-16 [Journal] [PubMed]

   Cortical Layer 5b pyr. cell with [Na+]i mechanisms, from Hay et al 2011 (Zylbertal et al 2017) [Model]

(556 refs)