Citation Relationships

Weaver CM, Hof PR, Wearne SL, Lindquist WB (2004) Automated algorithms for multiscale morphometry of neuronal dendrites. Neural Comput 16:1353-83 [PubMed]

References and models cited by this paper

References and models that cite this paper

Al-Kofahi KA, Lasek S, Szarowski DH, Pace CJ, Nagy G, Turner JN, Roysam B (2002) Rapid automated three-dimensional tracing of neurons from confocal image stacks. IEEE Trans Inf Technol Biomed 6:171-87 [PubMed]

Anderson SA, Classey JD, Condé F, Lund JS, Lewis DA (1995) Synchronous development of pyramidal neuron dendritic spines and parvalbumin-immunoreactive chandelier neuron axon terminals in layer III of monkey prefrontal cortex. Neuroscience 67:7-22 [PubMed]

Baer SM, Rinzel J (1991) Propagation of dendritic spikes mediated by excitable spines: a continuum theory. J Neurophysiol 65:874-90 [Journal] [PubMed]

Bartesaghi R, Severi S, Guidi S (2003) Effects of early environment on pyramidal neuron morphology in field CA1 of the guinea-pig. Neuroscience 116:715-32 [PubMed]

Bower J, Beeman D (1994) The Book of GENESIS: exploring realistic neural models with the GEneral NEural Simulation System

Cannon RC, Turner DA, Pyapali GK, Wheal HV (1998) An on-line archive of reconstructed hippocampal neurons. J Neurosci Methods 84:49-54 [PubMed]

Cohen AR, Roysam B, Turner JN (1994) Automated tracing and volume measurements of neurons from 3-D confocal fluorescence microscopy data. J Microsc 173:103-14 [PubMed]

de Lima AD, Voigt T, Morrison JH (1990) Morphology of the cells within the inferior temporal gyrus that project to the prefrontal cortex in the macaque monkey. J Comp Neurol 296:159-72 [Journal] [PubMed]

DeFelipe J, Fariñas I (1992) The pyramidal neuron of the cerebral cortex: morphological and chemical characteristics of the synaptic inputs. Prog Neurobiol 39:563-607 [PubMed]

Duan H, Wearne SL, Morrison JH, Hof PR (2002) Quantitative analysis of the dendritic morphology of corticocortical projection neurons in the macaque monkey association cortex. Neuroscience 114:349-59 [PubMed]

Duan H, Wearne SL, Rocher AB, Macedo A, Morrison JH, Hof PR (2003) Age-related dendritic and spine changes in corticocortically projecting neurons in macaque monkeys. Cereb Cortex 13:950-61 [PubMed]

Elston GN (2000) Pyramidal cells of the frontal lobe: all the more spinous to think with. J Neurosci 20:RC95 [PubMed]

Elston GN, Rockland KS (2002) The pyramidal cell of the sensorimotor cortex of the macaque monkey: phenotypic variation. Cereb Cortex 12:1071-8 [PubMed]

Elston GN, Rosa MG (1997) The occipitoparietal pathway of the macaque monkey: comparison of pyramidal cell morphology in layer III of functionally related cortical visual areas. Cereb Cortex 7:432-52 [PubMed]

Elston GN, Rosa MG (1998) Morphological variation of layer III pyramidal neurones in the occipitotemporal pathway of the macaque monkey visual cortex. Cereb Cortex 8:278-94 [PubMed]

Elston GN, Tweedale R, Rosa MG (1999) Cellular heterogeneity in cerebral cortex: a study of the morphology of pyramidal neurones in visual areas of the marmoset monkey. J Comp Neurol 415:33-51 [PubMed]

Elston GN, Tweedale R, Rosa MG (1999) Cortical integration in the visual system of the macaque monkey: large-scale morphological differences in the pyramidal neurons in the occipital, parietal and temporal lobes. Proc Biol Sci 266:1367-74 [Journal] [PubMed]

Elston GN, Tweedale R, Rosa MG (1999) Supragranular pyramidal neurones in the medial posterior parietal cortex of the macaque monkey: morphological heterogeneity in subdivisions of area 7. Neuroreport 10:1925-9 [PubMed]

Feldman ML (1984) Morphology of the neocortical pyramidal neuron. Cerebral cortex:Cellular components of the cerebral cortex, Peters A:Jones EC, ed. pp.123

Feldman ML, Peters A (1979) A technique for estimating total spine numbers on Golgi-impregnated dendrites. J Comp Neurol 188:527-42 [Journal] [PubMed]

Ford-Holevinski TS, Dahlberg TA, Agranoff BW (1986) A microcomputer-based image analyzer for quantitating neurite outgrowth. Brain Res 368:339-46 [PubMed]

Gilbert CD, Wiesel TN (1992) Receptive field dynamics in adult primary visual cortex. Nature 356:150-2 [Journal] [PubMed]

Glantz LA, Lewis DA (2000) Decreased dendritic spine density on prefrontal cortical pyramidal neurons in schizophrenia. Arch Gen Psychiatry 57:65-73 [PubMed]

Goddard NH, Beeman D, Cannon R, Cornelis H, Gewaltig MO, Hood G, Howell F, Rogister P, De_sch (2002) Neuro ML for plug and play neuronal modeling Neurocomputation 44:1077-1081

Goddard NH, Hucka M, Howell F, Cornelis H, Shankar K, Beeman D (2001) Towards NeuroML: model description methods for collaborative modelling in neuroscience. Philos Trans R Soc Lond B Biol Sci 356:1209-28 [Journal] [PubMed]

Harris KM, Jensen FE, Tsao B (1992) Three-dimensional structure of dendritic spines and synapses in rat hippocampus (CA1) at postnatal day 15 and adult ages: implications for the maturation of synaptic physiology and long-term potentiation. J Neurosci 12:2685-705 [PubMed]

Harris KM, Stevens JK (1988) Dendritic spines of rat cerebellar Purkinje cells: serial electron microscopy with reference to their biophysical characteristics. J Neurosci 8:4455-69 [PubMed]

Herzog A, Krell G, Michaelis B, Wang J, Zuschratter W, Braun K (1997) Restoration of three-dimensional quasi-binary images from confocal microscopy and its application to dendritic trees Three-dimensional microscopy: Image acquisition and processing IV, Proceedings of SPIE, Cogswell CJ:Conchello J:Wilson T, ed.

Hines ML (1994) The NEURON simulation program Neural Network Simulation Environments, Skrzypek J, ed. pp.147

Holmes WR (1989) The role of dendritic diameters in maximizing the effectiveness of synaptic inputs. Brain Res 478:127-37 [PubMed]

Hübener M, Schwarz C, Bolz J (1990) Morphological types of projection neurons in layer 5 of cat visual cortex. J Comp Neurol 301:655-74 [Journal] [PubMed]

Irwin SA, Idupulapati M, Gilbert ME, Harris JB, Chakravarti AB, Rogers EJ, Crisostomo RA, Larsen BP, Mehta A, Alcantara CJ, Patel B, Swain RA, Weiler IJ, Oostra BA, Greenough WT (2002) Dendritic spine and dendritic field characteristics of layer V pyramidal neurons in the visual cortex of fragile-X knockout mice. Am J Med Genet 111:140-6 [Journal] [PubMed]

Irwin SA, Patel B, Idupulapati M, Harris JB, Crisostomo RA, Larsen BP, Kooy F, Willems PJ, Cras P, Kozlowski PB, Swain RA, Weiler IJ, Greenough WT (2001) Abnormal dendritic spine characteristics in the temporal and visual cortices of patients with fragile-X syndrome: a quantitative examination. Am J Med Genet 98:161-7 [PubMed]

Jacobs B, Driscoll L, Schall M (1997) Life-span dendritic and spine changes in areas 10 and 18 of human cortex: a quantitative Golgi study. J Comp Neurol 386:661-80 [PubMed]

Jacobs B, Schall M, Prather M, Kapler E, Driscoll L, Baca S, Jacobs J, Ford K, Wainwright M, Treml M (2001) Regional dendritic and spine variation in human cerebral cortex: a quantitative golgi study. Cereb Cortex 11:558-71 [PubMed]

Koh IY, Lindquist WB, Zito K, Nimchinsky EA, Svoboda K (2002) An image analysis algorithm for dendritic spines. Neural Comput 14:1283-310 [Journal] [PubMed]

Koh YY (2001) Automated recognition algorithms for neural studies Unpublished doctoral dissertation, Stony Brook University

Kolb B, Gibb R, Gorny G (2003) Experience-dependent changes in dendritic arbor and spine density in neocortex vary qualitatively with age and sex. Neurobiol Learn Mem 79:1-10 [PubMed]

Krichmar JL, Nasuto SJ, Scorcioni R, Washington SD, Ascoli GA (2002) Effects of dendritic morphology on CA3 pyramidal cell electrophysiology: a simulation study. Brain Res 941:11-28 [PubMed]

Mainen ZF, Sejnowski TJ (1996) Influence of dendritic structure on firing pattern in model neocortical neurons. Nature 382:363-6 [Journal] [PubMed]

   Influence of dendritic structure on neocortical neuron firing patterns (Mainen and Sejnowski 1996) [Model]

Maravall M, Koh IY, Lindquist WB, Svoboda K (2004) Experience-dependent changes in basal dendritic branching of layer 2/3 pyramidal neurons during a critical period for developmental plasticity in rat barrel cortex. Cereb Cortex 14:655-64 [Journal] [PubMed]

Nimchinsky EA, Hof PR, Young WG, Morrison JH (1996) Neurochemical, morphologic, and laminar characterization of cortical projection neurons in the cingulate motor areas of the macaque monkey. J Comp Neurol 374:136-60 [Journal] [PubMed]

Nimchinsky EA, Oberlander AM, Svoboda K (2001) Abnormal development of dendritic spines in FMR1 knock-out mice. J Neurosci 21:5139-46 [PubMed]

Nimchinsky EA, Sabatini BL, Svoboda K (2002) Structure and function of dendritic spines. Annu Rev Physiol 64:313-53 [Journal] [PubMed]

Oh W, Lindquist WB (1999) Image thresholding by indicator kriging IEEE Trans Pattern Anal Mach Intell 21:590-602

Page TL, Einstein M, Duan H, He Y, Flores T, Rolshud D, Erwin JM, Wearne SL, Morrison JH, Hof PR (2002) Morphological alterations in neurons forming corticocortical projections in the neocortex of aged Patas monkeys. Neurosci Lett 317:37-41 [PubMed]

Purpura DP (1974) Dendritic spine "dysgenesis" and mental retardation. Science 186:1126-8 [PubMed]

Ramon_y_Cajal S (1893) Neue Darstellung vom histologischen Bau des Central nerven systems Arch Anat Entwickl :319-428

Rodriguez A, Ehlenberger D, Kelliher K, Einstein M, Henderson SC, Morrison JH, Hof PR, Wearne SL (2003) Automated reconstruction of three-dimensional neuronal morphology from laser scanning microscopy images. Methods 30:94-105 [PubMed]

Rumberger A, Schmidt M, Lohmann H, Hoffmann KP (1998) Correlation of electrophysiology, morphology, and functions in corticotectal and corticopretectal projection neurons in rat visual cortex. Exp Brain Res 119:375-90 [PubMed]

Rusakov DA, Stewart MG (1995) Quantification of dendritic spine populations using image analysis and a tilting disector. J Neurosci Methods 60:11-21 [PubMed]

Scheibel A, Conrad T, Perdue S, Tomiyasu U, Wechsler A (1990) A quantitative study of dendrite complexity in selected areas of the human cerebral cortex. Brain Cogn 12:85-101 [PubMed]

Scheibel AB, Paul LA, Fried I, Forsythe AB, Tomiyasu U, Wechsler A, Kao A, Slotnick J (1985) Dendritic organization of the anterior speech area. Exp Neurol 87:109-17 [PubMed]

Seib LM, Wellman CL (2003) Daily injections alter spine density in rat medial prefrontal cortex. Neurosci Lett 337:29-32 [PubMed]

Shapiro SS, Wilk MB (1965) An analysis of variance test for normality (complete samples) Biometrika 52:591-611

SHOLL DA (1953) Dendritic organization in the neurons of the visual and motor cortices of the cat. J Anat 87:387-406 [PubMed]

Soloway AS, Pucak ML, Melchitzky DS, Lewis DA (2002) Dendritic morphology of callosal and ipsilateral projection neurons in monkey prefrontal cortex. Neuroscience 109:461-71 [PubMed]

Stratford KJ, Mason AJR, Larkman AU, Major G, Jack JJB (1989) The modelling of pyramidal neurones in the visual cortex The Computing Neuron, Durbin R:Miall C:Mitchison G, ed. pp.296

Surkis A, Peskin CS, Tranchina D, Leonard CS (1998) Recovery of cable properties through active and passive modeling of subthreshold membrane responses from laterodorsal tegmental neurons. J Neurophysiol 80:2593-607 [Journal] [PubMed]

Tanzi E (1893) I fatti i le induzioni nellodierna istologia del sistema nervoso Riv Sper Freniatr Med Leg Alien Ment 19:419-422

Turner JN, Ancin H, Becker DE, Szarowski DH, Holmes M (1997) Automated image analysis technologies for biological 3D light microscopy Int J Imag Syst Tech 8:240-254

Turner JN, Shain W, Szarowski DH, Lasek S, Dowell N, Sipple B, Can A, Al-Kofahi K, Roysam B (2000) Three-dimensional light microscopy: Observation of thick objects J Histotechnol 23:205-217

Uylings HB, Ruiz-Marcos A, van Pelt J (1986) The metric analysis of three-dimensional dendritic tree patterns: a methodological review. J Neurosci Methods 18:127-51 [PubMed]

Wallace C, Hawrylak N, Greenough W (1991) Srudies of synapric srrucrural modificarion afrer long-rerm poranriarion and kindling. conrext for a molecular morphology. Long-term Potentiation: A Debate Of Current Issues, Baudry MD, ed. pp.189

Watzel R, Braun K, Hess A, Scheich H, Zuschratter W (1995) Detectionof dendritic spines in 3-dimensional images

Weaver CM (2003) Automated morphology of neural cells Unpublished doctoral dissertation, Stony Brook University

Weaver CM, Lindquist WB (2003) 3DMA-neuron users manual Available online at: neuron-3dma neuron.html

Weaver CM, Pinezich JD, Lindquist WB, Vazquez ME (2003) An algorithm for neurite outgrowth reconstruction. J Neurosci Methods 124:197-205 [PubMed]

Wilson CJ (1984) Passive cable properties of dendritic spines and spiny neurons. J Neurosci 4:281-97 [PubMed]

Wilson CJ (1988) Cellular mechanisms controlling the strength of synapses. J Electron Microsc Tech 10:293-313 [Journal] [PubMed]

Wilson CJ, Groves PM, Kitai ST, Linder JC (1983) Three-dimensional structure of dendritic spines in the rat neostriatum. J Neurosci 3:383-8 [PubMed]

Yamasaki T, Isokawa T, Matsui N, Ikeno H, Kanzaki R (2006) Reconstruction and simulation for three-dimensional morphological structure of insect neurons Neurocomputing 69:1043-1047

(72 refs)