Papers that obtained or contributed code in ModelDB

These papers state (in text) they used or contributed code to ModelDB or both
or they mention ModelDB in a neuroinformatics infrastructure context.

1Lemaire L, Desroches M, Krupa M, Pizzamiglio L, Scalmani P, Mantegazza M (2021) Modeling NaV1.1/SCN1A sodium channel mutations in a microcircuit with realistic ion concentration dynamics suggests differential GABAergic mechanisms leading to hyperexcitability in epilepsy and hemiplegic migraine PLoS Computational Biology 17(7):e1009239submitted materials
2Li C, Gulledge AT (2021) NMDA receptors enhance the fidelity of synaptic integration eNeurosubmitted materials
3Ricci G, Magosso E, Ursino M (2021) The relationship between oscillations in brain regions and functional connectivity: a critical analysis with the aid of neural mass models Brain Sciences (accepted)submitted materials
4Schreglmann S, Wang D, Peach R, Li J, Zhang X, Latorre A, Rhodes E, Panella E, Boyden ES, Barahona M, Santaniello S, Bhatia KP, Rothwell J, Grossman N (2021) Non-invasive suppression of essential tremor via phase-locked disruption of its temporal coherence Nature Communications 12:363 [PubMed]submitted materials
5Sinha A, Metzner C, Davey N, Adams R, Schumker M, Steuber V (2021) Growth Rules for the Repair of Asynchronous Irregular Neuronal Networks after Peripheral Lesions PLoS Computational Biologysubmitted materials
6Zang Y, De Schutter E (2021) The Cellular Electrophysiological Properties Underlying Multiplexed Coding in Purkinje Cells. J Neurosci [PubMed]submitted materials
7Assisi C, Stopfer M, Bazhenov M (2020) Optimality of sparse olfactory representations is not affected by network plasticity. PLoS Comput Biol 16:e1007461 [PubMed]submitted materials
8Bingham CS, Mergenthal A, Bouteiller JC, Song D, Lazzi G, Berger TW (2020) ROOTS: An Algorithm to Generate Biologically Realistic Cortical Axons and an Application to Electroceutical Modeling Frontiers in Computational Neuroscience 14:13submitted materials
9Brennan EKW, Sudhakar SK, Jedrasiak-Cape I, John TT, Ahmed OJ (2020) Hyperexcitable Neurons Enable Precise and Persistent Information Encoding in the Superficial Retrosplenial Cortex. Cell Rep 30:1598-1612.e8 [PubMed]submitted materials
10Bush D, Burgess N (2020) Advantages and detection of phase coding in the absence of rhythmicity. Hippocampus [PubMed]submitted materials
11Capllonch-Juan M, Sepulveda F (2020) Modelling the effects of ephaptic coupling on selectivity and response patterns during artificial stimulation of peripheral nerves. PLoS Comput Biol 16:e1007826 [PubMed]submitted materials
12Chartove JA, McCarthy MM, Pittman-Polletta BR, Kopell NJ (2020) A biophysical model of striatal microcircuits suggests gamma and beta oscillations interleaved at delta/theta frequencies mediate periodicity in motor control PLOS Computational Biology 16:1-30submitted materials
13Cohen CCH, Popovic MA, Klooster J, Weil M, Möbius W, Nave K, Kole MHP (2020) Saltatory Conduction along Myelinated Axons Involves a Periaxonal Nanocircuit Cellsubmitted materials
14Costa RM, Baxter DA, Byrne JH (2020) Computational model of the distributed representation of operant reward memory: combinatoric engagement of intrinsic and synaptic plasticity mechanisms Learning & Memory 27:236-249submitted materials
15Crevecoeur F, Thonnard JL, Lefèvre P (2020) A Very Fast Time Scale of Human Motor Adaptation: Within Movement Adjustments of Internal Representations during Reaching. eNeuro [PubMed]submitted materials
16Eckmann S, Klimmasch L, Shi BE, Triesch J (2020) Active efficient coding explains the development of binocular vision and its failure in amblyopia. Proc Natl Acad Sci U S A [PubMed]submitted materials
17Egger R, Narayanan RT, Guest JM, Bast A, Udvary D, Messore LF, Das S, de Kock CP, Oberlaender M (2020) Cortical Output Is Gated by Horizontally Projecting Neurons in the Deep Layers Neuronsubmitted materials
18Giacopelli G, Migliore M, Tegolo D (2020) Graph-theoretical derivation of brain structural connectivity Applied Mathematics and Computation 377:125150submitted materials
19Hazan L, Ziv NE (2020) Activity dependent and independent determinants of synaptic size diversity. J Neurosci [PubMed]submitted materials
20Imam N, Cleland TA (2020) Rapid online learning and robust recall in a neuromorphic olfactory circuit Nature Machine Intelligence 2:181-191submitted materials
21Lupascu CA, Morabito A, Ruggeri F, Parisi C, Pimpinella D, Pizzarelli R, Meli G, Marinelli S, Cherubini E, Cattaneo A, Migliore M (2020) Computational modeling of inhibitory transsynaptic signaling in hippocampal and cortical neurons expressing intrabodies against gephyrin Frontiers in Cellular Neuroscience 14:173submitted materials
22Maes A, Barahona M, Clopath C (2020) Learning spatiotemporal signals using a recurrent spiking network that discretizes time. PLoS Comput Biol 16:e1007606 [PubMed]submitted materials
23Mäki-Marttunen T, Iannella N, Edwards AG, Einevoll GT, Blackwell KT (2020) A unified computational model for cortical post-synaptic plasticity. Elife [PubMed]submitted materials
24Mulcahy G, Atwood B, Kuznetsov A (2020) Basal ganglia role in learning rewarded actions and executing previously learned choices: Healthy and diseased states. PLoS One 15:e0228081 [PubMed]submitted materials
25Pedrosa V, Clopath C (2020) The interplay between somatic and dendritic inhibition promotes the emergence and stabilization of place fields. PLoS Comput Biol 16:e1007955 [PubMed]submitted materials
26Ray S, Aldworth ZN, Stopfer MA (2020) Feedback inhibition and its control in an insect olfactory circuit. Elife [PubMed]both
27Sadeh S, Clopath C (2020) Theory of neuronal perturbome in cortical networks PNAS (accepted)submitted materials
28Sadeh S, Clopath C (2020) Patterned perturbation of inhibition can reveal the dynamical structure of neural processing eLife 9:e52757submitted materials
29Sharma SK, Mondal A, Mondal A, Upadhyay RK, Hens C (2020) Emergence of bursting in a network of memory dependent excitable and spiking leech-heart neurons. J R Soc Interface 17:20190859 [PubMed]submitted materials
30Sherif AM, Neymotin SA, Lytton WW (2020) In silico hippocampal modeling for multi-target pharmacotherapy in schizophrenia Nature Schizophrenia, acceptedboth
31Shuman T, Aharoni D, Cai DJ, Lee CR, Chavlis S, Page-Harley L, Vetere LM, Feng Y, Yang CY, Mollinedo-Gajate I, Chen L, Pennington ZT, Taxidis J, Flores SE, Cheng K, Javaherian M, Kaba CC, Rao N, La-Vu M, Pandi I, Shtrahman M, Bakhurin KI, Masmanidis SC, Khakh BS, Poirazi P, Silva AJ, Golshani P (2020) Breakdown of spatial coding and interneuron synchronization in epileptic mice. Nat Neurosci 23:229-238 [PubMed]submitted materials
32Ursino M, Magosso E, Lopane G, Calandra-Buonaura G, Cortelli P, Contin M (2020) Mathematical modeling and parameter estimation of levodopa motor response in patients with parkinson disease. PLoS One 15:e0229729 [PubMed]submitted materials
33Yousif N, Bain PG, Nandi D, Borisyuk R (2020) A Population Model of Deep Brain Stimulation in Movement Disorders From Circuits to Cells. Front Hum Neurosci 14:55 [PubMed]submitted materials
34Ache JM, Polsky J, Alghailani S, Parekh R, Breads P, Peek MY, Bock DD, von Reyn CR, Card GM (2019) Neural Basis for Looming Size and Velocity Encoding in the Drosophila Giant Fiber Escape Pathway. Curr Biol 29:1073-1081.e4 [PubMed]obtained materials
35Adams W, Graham JN, Han X, Riecke H (2019) Top-down inputs drive neuronal network rewiring and context-enhanced sensory processing in olfaction. PLoS Comput Biol 15:e1006611 [PubMed]submitted materials
36Ait Ouares K, Filipis L, Tzilivaki A, Poirazi P, Canepari M (2019) Two Distinct Sets of Ca2+ and K+ Channels Are Activated at Different Membrane Potentials by the Climbing Fiber Synaptic Potential in Purkinje Neuron Dendrites. J Neurosci 39:1969-1981 [PubMed]both
37Andreozzi E, Carannante I, D'Addio G, Cesarelli M, Balbi P (2019) Phenomenological models of NaV1.5. A side by side, procedural, hands-on comparison between Hodgkin-Huxley and kinetic formalisms Scientific Reports 9:17493 [PubMed]submitted materials
38Bono J, Clopath C (2019) Synaptic plasticity onto inhibitory neurons as a mechanism for ocular dominance plasticity. PLoS Comput Biol 15:e1006834 [PubMed]submitted materials
39Chrysanthidis N, Fiebig F, Lansner A (2019) Introducing double bouquet cells into a modular cortical associative memory model Journal of Computational Neurosciencesubmitted materials
40Cowan AE, Mendes P, Blinov ML (2019) ModelBricks--modules for reproducible modeling improving model annotation and provenance npj Systems Biology and Applications 5:37mentions
41Crevecoeur F, Scott SH, Cluff T (2019) Robust control in human reaching movements: a model-free strategy to compensate for unpredictable disturbances. J Neurosci [PubMed]submitted materials
42Denizot A, Arizono M, Nägerl UV, Soula H, Berry H (2019) Simulation of calcium signaling in fine astrocytic processes: Effect of spatial properties on spontaneous activity. PLoS Comput Biol 15:e1006795 [PubMed]submitted materials
43Dewell RB, Gabbiani F (2019) Active membrane conductances and morphology of a collision detection neuron broaden its impedance profile and improve discrimination of input synchrony. J Neurophysiol [PubMed]both
44Feng F, Headley DB , Amir A, Kanta V, Chen Z, Pare D, Nair S (2019) Gamma oscillations in the basolateral amygdala: biophysical mechanisms and computational consequences eNeurosubmitted materials
45Gall D, Dupont G (2019) Tonic Activation of Extrasynaptic NMDA Receptors Decreases Intrinsic Excitability and Promotes Bistability in a Model of Neuronal Activity. Int J Mol Sci [PubMed]submitted materials
46Günay C, Doloc-Mihu A, Lamb DG, Calabrese RL (2019) Synaptic Strengths Dominate Phasing of Motor Circuit: Intrinsic Conductances of Neuron Types Need Not Vary across Animals. eNeuro [PubMed]obtained materials
47Harris JJ, Engl E, Attwell D, Jolivet RB (2019) Energy-efficient information transfer at thalamocortical synapses. PLoS Comput Biol 15:e1007226 [PubMed]obtained materials
48Iavarone E, Yi J, Shi Y, Zandt BJ, O'Reilly C, Van Geit W, Rössert C, Markram H, Hill SL (2019) Experimentally-constrained biophysical models of tonic and burst firing modes in thalamocortical neurons. PLoS Comput Biol 15:e1006753 [PubMed]both
49Ibañez S, Luebke JI, Chang W, Draguljic D, Weaver CM (2019) Network Models Predict That Pyramidal Neuron Hyperexcitability and Synapse Loss in the dlPFC Lead to Age-Related Spatial Working Memory Impairment in Rhesus Monkeys. Front Comput Neurosci 13:89 [PubMed]submitted materials
50Khatri SN, Wu WC, Yang Y, Pugh JR (2019) Mechanisms of GABAB receptor enhancement of extrasynaptic GABAA receptor currents in cerebellar granule cells. Sci Rep 9:16683 [PubMed]obtained materials
51Kobayashi R, Kurita S, Kurth A, Kitano K, Mizuseki K, Diesmann M, Richmond BJ, Shinomoto S (2019) Reconstructing neuronal circuitry from parallel spike trains. Nat Commun 10:4468 [PubMed]submitted materials
52Lian Y, Grayden DB, Kameneva T, Meffin H, Burkitt AN (2019) Toward a Biologically Plausible Model of LGN-V1 Pathways Based on Efficient Coding Frontiers in Neural Circuits 13:13submitted materials
53Linster C, Kelsch W (2019) A computational model of oxytocin modulation of olfactory recognition memory. eNeuro [PubMed]submitted materials
54Liu Y, Milton J, Campbell SA (2019) Outgrowing seizures in Childhood Absence Epilepsy: time delays and bistability. J Comput Neurosci [PubMed]submitted materials
55Lombardi A, Jedlicka P, Luhmann HJ, Kilb W (2019) Interactions Between Membrane Resistance, GABA-A Receptor Properties, Bicarbonate Dynamics and Cl-Transport Shape Activity-Dependent Changes of Intracellular Cl- Concentration Int J of Mol Sci [PubMed]submitted materials
56Mäki-Marttunen T, Devor A, Phillips WA, Dale AM, Andreassen OA, Einevoll GT (2019) Computational modeling of genetic contributions to excitability and neural coding in layer V pyramidal cells: applications to schizophrenia pathology Front. Comput. Neurosci. 13:66submitted materials
57Malik-Sheriff RS, Glont M, Nguyen TVN, Tiwari K, Roberts MG, Xavier A, Vu MT, Men J, Maire M, Kananathan S, Fairbanks EL, Meyer JP, Arankalle C, Varusai TM, Knight-Schrijver V, Li L, Dueñas-Roca C, Dass G, Keating SM, Park YM, Buso N, Rodriguez N, Hucka M, Hermjakob H (2019) BioModels-15 years of sharing computational models in life science. Nucleic Acids Res [PubMed]mentions
58Martinello K, Giacalone E, Migliore M, Brown DA, Shah MM (2019) The subthreshold-active KV7 current regulates neurotransmission by limiting spike-induced Ca2+ influx in hippocampal mossy fiber synaptic terminals. Commun Biol 2:145 [PubMed]submitted materials
59McDougal RA, Dalal I, Morse TM, Shepherd GM (2019) Automated Metadata Suggestion During Repository Submission. Neuroinformatics 17(3):361-371 [PubMed]submitted materials
60McKinnon ML, Tian K, Li Y, Sokoloff AJ, Galvin ML, Choi MH, Prinz A, Hochman S (2019) Dramatically Amplified Thoracic Sympathetic Postganglionic Excitability and Integrative Capacity Revealed with Whole-Cell Patch-Clamp Recordings. eNeuro [PubMed]submitted materials
61Moubarak E, Engel D, Dufour MA, Tapia M, Tell F, Goaillard JM (2019) Robustness to Axon Initial Segment Variation Is Explained by Somatodendritic Excitability in Rat Substantia Nigra Dopaminergic Neurons. J Neurosci 39:5044-5063 [PubMed]submitted materials
62Muddapu VR, Mandali A, Chakravarthy VS, Ramaswamy S (2019) A Computational Model of Loss of Dopaminergic Cells in Parkinson's Disease Due to Glutamate-Induced Excitotoxicity. Front Neural Circuits 13:11 [PubMed]submitted materials
63Muller SZ, Zadina AN, Abbott LF, Sawtell NB (2019) Continual Learning in a Multi-Layer Network of an Electric Fish. Cell [PubMed]submitted materials
64Nicola W, Clopath C (2019) A diversity of interneurons and Hebbian plasticity facilitate rapid compressible learning in the hippocampus. Nat Neurosci 22:1168-1181 [PubMed]submitted materials
65Park J, Papoutsi A, Ash RT, Marin MA, Poirazi P, Smirnakis SM (2019) Contribution of apical and basal dendrites to orientation encoding in mouse V1 L2/3 pyramidal neurons Nature Communications 10:5372submitted materials
66Pousinha PA, Mouska X, Bianchi D, Temido-Ferreira M, Rajão-Saraiva J, Gomes R, Fernandez SP, Salgueiro-Pereira AR, Gandin C, Raymond EF, Barik J, Goutagny R, Bethus I, Lopes LV, Migliore M, Marie H (2019) The Amyloid Precursor Protein C-Terminal Domain Alters CA1 Neuron Firing, Modifying Hippocampus Oscillations and Impairing Spatial Memory Encoding. Cell Rep 29:317-331.e5 [PubMed]both
67Rubin JE, Smith JC (2019) Robustness of respiratory rhythm generation across dynamic regimes. PLoS Comput Biol 15:e1006860 [PubMed]submitted materials
68Rumbell T, Kozloski J (2019) Dimensions of control for subthreshold oscillations and spontaneous firing in dopamine neurons PLOS Computational Biology 15:1-34submitted materials
69Soldado-Magraner S, Brandalise F, Honnuraiah S, Pfeiffer M, Moulinier M, Gerber U, Douglas R (2019) Conditioning by Subthreshold Synaptic Input Changes the Intrinsic Firing Pattern of CA3 Hippocampal Neurons. J Neurophysiol [PubMed]submitted materials
70Solinas SMG, Edelmann E, Leßmann V, Migliore M (2019) A kinetic model for Brain-Derived Neurotrophic Factor mediated spike timing-dependent LTP. PLoS Comput Biol 15:e1006975 [PubMed]both
71Stockton DB, Prinz AA, Santamaria F (2019) Provenance and Reproducibility in the Automation of a Standard Computational Neuroscience Pipeline Proceedings of the 2Nd International Workshop on Practical Reproducible Evaluation of Computer Systems :7-12mentions
72Suryanarayana SM, Hellgren Kotaleski J, Grillner S, Gurney KN (2019) Roles for globus pallidus externa revealed in a computational model of action selection in the basal ganglia. Neural Netw 109:113-136 [PubMed]submitted materials
73Tanaka T, Nakamura KC (2019) Focal inputs are a potential origin of local field potential (LFP) in the brain regions without laminar structure. PLoS One 14:e0226028 [PubMed]both
74Tejada J, Roque AC (2019) Conductance-based models and the fragmentation problem: A case study based on hippocampal CA1 pyramidal cell models and epilepsy. Epilepsy Behav :106841 [PubMed]obtained materials
75Tikidji-Hamburyan RA, Leonik CA, Canavier CC (2019) Phase response theory explains cluster formation in sparsely but strongly connected inhibitory neural networks and effects of jitter due to sparse connectivity. J Neurophysiol 121:1125-1142 [PubMed]submitted materials
76Turi GF, Li W, Chavlis S, Pandi I, O’Hare J, Priestley JB, Grosmark AD, Liao Z, Ladow M, Zhang JF, Zemelman BV, Poirazi P, Losonczy A (2019) Vasoactive Intestinal Polypeptide-Expressing Interneurons in the Hippocampus Support Goal-Oriented Spatial Learning Neuronsubmitted materials
77Tzilivaki A, Kastellakis G, Poirazi P (2019) Challenging the point neuron dogma: FS basket cells as 2-stage nonlinear integrators Nature Communications 10(1):3664 [PubMed]submitted materials
78Viertel R, Borisyuk A (2019) A Computational model of the mammalian external tufted cell. J Theor Biol 462:109-121 [PubMed]submitted materials
79Wilmes KA, Clopath C (2019) Inhibitory microcircuits for top-down plasticity of sensory representations. Nat Commun 10:5055 [PubMed]submitted materials
80Zhang X, Santaniello S (2019) Role of cerebellar GABAergic dysfunctions in the origins of essential tremor Proceedings of the National Academy of Sciencessubmitted materials
81Zheng Y, Liu P, Bai L, Trimmer JS, Bean BP, Ginty DD (2019) Deep Sequencing of Somatosensory Neurons Reveals Molecular Determinants of Intrinsic Physiological Properties Neuronsubmitted materials
82Aberra AS, Peterchev AV, Grill WM (2018) Biophysically realistic neuron models for simulation of cortical stimulation. J Neural Eng 15:066023 [PubMed]submitted materials
83Anderson RW, Farokhniaee A, Gunalan K, Howell B, McIntyre CC (2018) Action potential initiation, propagation, and cortical invasion in the hyperdirect pathway during subthalamic deep brain stimulation Brain Stimulationsubmitted materials
84Antunes G, Faria da Silva SF, Simoes de Souza FM (2018) Mirror Neurons Modeled Through Spike-Timing-Dependent Plasticity are Affected by Channelopathies Associated with Autism Spectrum Disorder. Int J Neural Syst 28:1750058 [PubMed]submitted materials
85Aussel A, Buhry L, Tyvaert L, Ranta R (2018) A detailed anatomical and mathematical model of the hippocampal formation for the generation of sharp-wave ripples and theta-nested gamma oscillations. J Comput Neurosci 45:207-221 [PubMed]submitted materials
86Barlow BM, Joos B, Trinh AK, Longtin A (2018) Cooling reverses pathological bifurcations to spontaneous firing caused by mild traumatic injury. Chaos 28:106328 [PubMed]obtained materials
87Birgiolas J, Crook SM, Gerkin RC (2018) Resources for Modeling in Computational Neuroscience Hippocampal Microcircuits: A Computational Modeler, Cutsuridis, Vassilis and Graham, Bruce P. and Cobb, Stuart and Vida, Imre, ed. pp.805mentions
88Biró ÁA, Brémaud A, Falck J, Ruiz AJ (2018) A-type K+ channels impede supralinear summation of clustered glutamatergic inputs in layer 3 neocortical pyramidal neurons. Neuropharmacology 140:86-99 [PubMed]obtained materials
89Bloss EB, Cembrowski MS, Karsh B, Colonell J, Fetter RD, Spruston N (2018) Single excitatory axons form clustered synapses onto CA1 pyramidal cell dendrites. Nat Neurosci 21:353-363 [PubMed]submitted materials
90Cavarretta F, Burton SD, Igarashi KM, Shepherd GM, Hines ML, Migliore M (2018) Parallel odor processing by mitral and middle tufted cells in the olfactory bulb. Sci Rep 8:7625 [PubMed]submitted materials
91Chauhan T, Masquelier T, Montlibert A, Cottereau BR (2018) Emergence of Binocular Disparity Selectivity through Hebbian Learning. J Neurosci 38:9563-9578 [PubMed]submitted materials
92Conte C, Lee R, Sarkar M, Terman D (2018) A mathematical model of recurrent spreading depolarizations. J Comput Neurosci 44:203-217 [PubMed]submitted materials
93Dan O, Hopp E, Borst A, Segev I (2018) Non-uniform weighting of local motion inputs underlies dendritic computation in the fly visual system. Sci Rep 8:5787 [PubMed]submitted materials
94Dewell RB, Gabbiani F (2018) Biophysics of object segmentation in a collision-detecting neuron. Elife [PubMed]submitted materials
95Dewell RB, Gabbiani F (2018) M current regulates firing mode and spike reliability in a collision-detecting neuron. J Neurophysiol 120:1753-1764 [PubMed]both
96Dorman DB, Jedrzejewska-Szmek J, Blackwell KT (2018) Inhibition enhances spatially-specific calcium encoding of synaptic input patterns in a biologically constrained model. Elife, Kennedy, Mary B, ed. [PubMed]submitted materials
97Eyal G, Verhoog MB, Testa-Silva G, Deitcher Y, Benavides-Piccione R, DeFelipe J, de Kock CPJ, Mansvelder HD, Segev I (2018) Human Cortical Pyramidal Neurons: From Spines to Spikes via Models. Front Cell Neurosci 12:181 [PubMed]submitted materials
98Ferrario A, Merrison-Hort R, Soffe SR, Borisyuk R (2018) Structural and functional properties of a probabilistic model of neuronal connectivity in a simple locomotor network. Elife [PubMed]submitted materials
99Fiore VG, Ognibene D, Adinoff B, Gu X (2018) A Multilevel Computational Characterization of Endophenotypes in Addiction eNeurosubmitted materials
100Frank AC, Huang S, Zhou M, Gdalyahu A, Kastellakis G, Silva TK, Lu E, Wen X, Poirazi P, Trachtenberg JT, Silva AJ (2018) Hotspots of dendritic spine turnover facilitate clustered spine addition and learning and memory. Nat Commun 9:422 [PubMed]submitted materials
101González-Rueda A, Pedrosa V, Feord RC, Clopath C, Paulsen O (2018) Activity-Dependent Downscaling of Subthreshold Synaptic Inputs during Slow-Wave-Sleep-like Activity In Vivo. Neuron 97:1244-1252.e5 [PubMed]submitted materials
102Goodliffe JW, Song H, Rubakovic A, Chang W, Medalla M, Weaver CM, Luebke JI (2018) Differential changes to D1 and D2 medium spiny neurons in the 12-month-old Q175+/- mouse model of Huntington's Disease. PLoS One 13:e0200626 [PubMed]submitted materials
103Górski T, Veltz R, Galtier M, Fragnaud H, Goldman JS, Telenczuk B, Destexhe A (2018) Dendritic sodium spikes endow neurons with inverse firing rate response to correlated synaptic activity. J Comput Neurosci 45:223-234 [PubMed]submitted materials
104Helfer P, Shultz TR (2018) Coupled feedback loops maintain synaptic long-term potentiation: A computational model of PKMzeta synthesis and AMPA receptor trafficking. PLoS Comput Biol 14:e1006147 [PubMed]submitted materials
105Hokanson JA, Gaunt RA, Weber DJ (2018) Effects of Synchronous Electrode Pulses on Neural Recruitment During Multichannel Microstimulation. Sci Rep 8:13067 [PubMed]obtained materials
106Hsu CL, Zhao X, Milstein AD, Spruston N (2018) Persistent sodium current mediates the steep voltage dependence of spatial coding in hippocampal pyramidal neurons Neuron 99:1-16submitted materials
107Jaffe DB, Brenner R (2018) A computational model for how the fast afterhyperpolarization paradoxically increases gain in regularly firing neurons. J Neurophysiol 119:1506-1520 [PubMed]submitted materials
108Joos B, Barlow BM, Morris CE (2018) Calculating the Consequences of Left-Shifted Nav Channel Activity in Sick Excitable Cells. Handb Exp Pharmacol 246:401-422 [PubMed]submitted materials
109Kenny A, Plank MJ, David T (2018) The role of astrocytic calcium and TRPV4 channels in neurovascular coupling. J Comput Neurosci 44:97-114 [PubMed]obtained materials
110Kilinc D, Demir A (2018) Spike timing precision of neuronal circuits. J Comput Neurosci 44:341-362 [PubMed]submitted materials
111Knowlton C, Kutterer S, Roeper J, Canavier CC (2018) Calcium dynamics control K-ATP channel-mediated bursting in substantia nigra dopamine neurons: a combined experimental and modeling study. J Neurophysiol 119:84-95 [PubMed]submitted materials
112Kufel DS, Wojcik GM (2018) Analytical modelling of temperature effects on an AMPA-type synapse. J Comput Neurosci 44:379-391 [PubMed]both
113Kumaravelu K, Oza CS, Behrend CE, Grill WM (2018) Model-based deconstruction of cortical evoked potentials generated by subthalamic nucleus deep brain stimulation. J Neurophysiol 120:662-680 [PubMed]submitted materials
114Lindroos R, Dorst MC, Du K, Filipovic M, Keller D, Ketzef M, Kozlov AK, Kumar A, Lindahl M, Nair AG, Pérez-Fernández J, Grillner S, Silberberg G, Hellgren Kotaleski J (2018) Basal Ganglia Neuromodulation Over Multiple Temporal and Structural Scales-Simulations of Direct Pathway MSNs Investigate the Fast Onset of Dopaminergic Effects and Predict the Role of Kv4.2. Front Neural Circuits 12:3 [PubMed]submitted materials
115Linne M (2018) Neuroinformatics and Computational Modelling as Complementary Tools for Neurotoxicology Studies BASIC & CLINICAL PHARMACOLOGY & TOXICOLOGY 123:56-61mentions
116Mahapatra C, Brain KL, Manchanda R (2018) A biophysically constrained computational model of the action potential of mouse urinary bladder smooth muscle. PLoS One 13:e0200712 [PubMed]submitted materials
117Mäki-Marttunen T, Halnes G, Devor A, Metzner C, Dale AM, Andreassen OA, Einevoll GT (2018) A stepwise neuron model fitting procedure designed for recordings with high spatial resolution: Application to layer 5 pyramidal cells. J Neurosci Methods 293:264-283 [PubMed]submitted materials
118Mandge D, Manchanda R (2018) A biophysically detailed computational model of urinary bladder small DRG neuron soma. PLoS Comput Biol 14:e1006293 [PubMed]submitted materials
119Manis PB, Campagnola L (2018) A biophysical modelling platform of the cochlear nucleus and other auditory circuits: From channels to networks. Hear Res 360:76-91 [PubMed]obtained materials
120Masquelier T (2018) STDP Allows Close-to-Optimal Spatiotemporal Spike Pattern Detection by Single Coincidence Detector Neurons. Neuroscience 389:133-140 [PubMed]submitted materials
121Masquelier T, Saeed Reza Kheradpisheh SR (2018) Optimal localist and distributed coding of spatiotemporal spike patterns through STDP and coincidence detection Front. Comput. Neurosci.submitted materials
122Massobrio G, Martinoia S, Massobrio P (2018) Equivalent Circuit of the Neuro-Electronic Junction for Signal Recordings From Planar and Engulfed Micro-Nano-Electrodes. IEEE Trans Biomed Circuits Syst 12:3-12 [PubMed]submitted materials
123Medan V, Mäki-Marttunen T, Sztarker J, Preuss T (2018) Differential processing in modality-specific Mauthner cell dendrites. J Physiol 596:667-689 [PubMed]submitted materials
124Michalikova M, Remme MWH, Kempter R (2018) Extracellular waveforms reveal an axonal origin of spikelets in pyramidal neurons. J Neurophysiol 120:1484-1495 [PubMed]obtained materials
125Migliore R, Lupascu CA, Bologna LL, Romani A, Courcol JD, Antonel S, Van Geit WAH, Thomson AM, Mercer A, Lange S, Falck J, Roessert CA, Shi Y, Hagens O, Pezzoli M, Freund TF, Kali S, Muller EB, Schuermann F, Markram H, Migliore M (2018) The physiological variability of channel density in hippocampal CA1 pyramidal cells and interneurons explored using a unified data-driven modeling workflow PLOS Computational Biologysubmitted materials
126Milkowski M, Hensel WM, Hohol M (2018) Replicability or reproducibility? On the replication crisis in computational neuroscience and sharing only relevant detail. J Comput Neurosci 45:163-172 [PubMed]mentions
127Mozafari M, Kheradpisheh SR, Masquelier T, Nowzari-Dalini A, Ganjtabesh M (2018) First-Spike-Based Visual Categorization Using Reward-Modulated STDP IEEE Transactions on Neural Networks and Learning Systems :1-13submitted materials
128Mulugeta L, Drach A, Erdemir A, Hunt CA, Horner M, Ku JP, Myers JG, Vadigepalli R, Lytton WW (2018) Credibility, Replicability, and Reproducibility in Simulation for Biomedicine and Clinical Applications in Neuroscience. Front Neuroinform 12:18 [PubMed]mentions
129Myung J, Schmal C, Hong S, Tsukizawa Y, Rose P, Zhang Y, Holtzman MJ, De Schutter E, Herzel H, Bordyugov G, Takumi T (2018) The choroid plexus is an important circadian clock component. Nat Commun 9:1062 [PubMed]submitted materials
130Nanda S, Das R, Bhattacharjee S, Cox DN, Ascoli GA (2018) Morphological determinants of dendritic arborization neurons in Drosophila larva. Brain Struct Funct 223:1107-1120 [PubMed]obtained materials
131Radecki DZ, Johnson EL, Brown AK, Meshkin NT, Perrine SA, Gow A (2018) Corticohippocampal Dysfunction In The OBiden Mouse Model Of Primary Oligodendrogliopathy. Sci Rep 8:16116 [PubMed]submitted materials
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