Papers that obtained or contributed code in ModelDB

These papers state (in text or supplementary material) they used or contributed code to ModelDB or both
or they mention ModelDB in a neuroinformatics infrastructure context.

1Ben-Shalom R, Keeshen CM,Berrios KN, An JY, Sanders SJ, Bender KJ (2017) Opposing effects on NaV1.2 function underlie differences between SCN2A variants observed in individuals with autism spectrum disorder or infantile seizures Biological Psychiatry, epub before printsubmitted materials
2Chen W, De Schutter E (2017) Parallel STEPS: Large Scale Stochastic Spatial Reaction-Diffusion Simulation with High Performance Computers Front. Neuroinform. 11:13submitted materials
3Danielson NB, Turi GF, Ladow M, Chavlis S, Petrantonakis PC, Poirazi P, Losonczy A (2017) In Vivo Imaging of Dentate Gyrus Mossy Cells in Behaving Mice. Neuron 93:552-559.e4[PubMed]submitted materials
4Hepburn I, Jain A, Gangal H, Yamamoto Y, Tanaka-Yamamoto K, De Schutter E (2017) A model of induction of cerebellar Long-Term Depression including RKIP inactivation of Raf and MEK Frontiers in Molecular Neurosciencesubmitted materials
5Justus D, Dalügge D, Bothe S, Fuhrmann F, Hannes C, Kaneko H, Friedrichs D, Sosulina L, Schwarz I, Elliott DA, Schoch S, Bradke F, Schwarz MK, Remy S (2017) Glutamatergic synaptic integration of locomotion speed via septoentorhinal projections. Nat Neurosci 20:16-19[PubMed]submitted materials
6Manninen T, Havela R, Linne ML (2017) Reproducibility and comparability of computational models for astrocyte calcium excitability Front. Neuroinform.both
7Neymotin SA, Suter BA, Dura-Bernal S, Shepherd GM, Migliore M, Lytton WW (2017) Optimizing computer models of corticospinal neurons to replicate in vitro dynamics. J Neurophysiol 117(1):148-162[PubMed]submitted materials
8Pedrosa V, Clopath C (2017) The role of neuromodulators in cortical plasticity. A computational perspective. Front. Synaptic Neurosci. 8:38submitted materials
9Tikidji-Hamburyan RA, El-Ghazawi TA, Triplett JW (2016) Novel Models of Visual Topographic Map Alignment in the Superior Colliculus PLoS Computational Biology 12(12):e1005315[PubMed]submitted materials
10Whittington JCR, Bogacz R (2017) An approximation of the error back-propagation algorithm in a predictive coding network with local Hebbian synaptic plasticity Neural Computation, in press (preprint available)submitted materials
11Zylbertal A, Yarom Y, Wagner S (2017) Synchronous infra-slow bursting in the mouse accessory olfactory bulb emerge from interplay between intrinsic neuronal dynamics and network connectivity. J Neurosci[PubMed]submitted materials
12Alturki A, Feng F, Nair A, Guntu V, Nair SS (2016) Distinct current modules shape cellular dynamics in model neurons. Neuroscience 334:309-331[PubMed]both
13Bezaire MJ, Raikov I, Burk K, Vyas D, Soltesz I (2016) Interneuronal mechanisms of hippocampal theta oscillation in a full-scale model of the rodent CA1 circuit. Elife[PubMed]submitted materials
14Bird AD, Cuntz H (2016) Optimal Current Transfer in Dendrites. PLoS Comput Biol 12:e1004897[PubMed]obtained materials
15Bloss EB, Cembrowski MS, Karsh B, Colonell J, Fetter RD, Spruston N (2016) Structured Dendritic Inhibition Supports Branch-Selective Integration in CA1 Pyramidal Cells. Neuron[PubMed]submitted materials
16Buchin A, Chizhov A, Huberfeld G, Miles R, Gutkin BS (2016) Reduced Efficacy of the KCC2 Cotransporter Promotes Epileptic Oscillations in a Subiculum Network Model. J Neurosci 36:11619-11633[PubMed]submitted materials
17Buchin A, Rieubland S, Häusser M, Gutkin BS, Roth A (2016) Inverse Stochastic Resonance in Cerebellar Purkinje Cells. PLoS Comput Biol 12:e1005000[PubMed]submitted materials
18Ceballos CC, Li S, Roque AC, Tzounopoulos T, Leao RM (2016) Ih equalizes membrane input resistance in a heterogeneous population of fusiform neurons in the dorsal cochlear nucleus Front. Cell. Neurosci. 10:249[PubMed]submitted materials
19Cui Y, Prokin I, Xu H, Delord B, Genet S, Venance L, Berry H (2016) Endocannabinoid dynamics gate spike-timing dependent depression and potentiation. Elife[PubMed]submitted materials
20Dover K, Marra C, Solinas S, Popovic M, Subramaniyam S, Zecevic D, D'Angelo E, Goldfarb M (2016) FHF-independent conduction of action potentials along the leak-resistant cerebellar granule cell axon. Nat Commun 7:12895[PubMed]submitted materials
21Dura-Bernal S, Li K, Neymotin SA, Francis JT, Principe JC, Lytton WW (2016) Restoring behavior via inverse neurocontroller in a lesioned cortical spiking model driving a virtual arm. Front. Neurosci. Neuroprosthetics 10:28submitted materials
22Enrico P, Migliore M, Spiga S, Mulas G, Caboni F, Diana M (2016) Morphofunctional alterations in ventral tegmental area dopamine neurons in acute and prolonged opiates withdrawal. A computational perspective. Neuroscience 322:195-207[PubMed]both
23Fietkiewicz C, Loparo KA (2016) Analysis and Enhancements of a Prolific Macroscopic Model of Epilepsy. Scientifica (Cairo) 2016:3628247[PubMed]both
24Fietkiewicz C, Shafer GO, Platt EA, Wilson CG (2016) Variability in respiratory rhythm generation: In vitro and in silico models Communications in Nonlinear Science and Numerical Simulation 32:158-168submitted materials
25Fribance S, Wang J, Roppolo JR, de Groat WC, Tai C (2016) Axonal model for temperature stimulation. J Comput Neurosci[PubMed]submitted materials
26Goldwyn JH, Rinzel J (2016) Neuronal coupling by endogenous electric fields: Cable theory and applications to coincidence detector neurons in the auditory brainstem. J Neurophysiol :jn.00780.2015[PubMed]submitted materials
27Guet-McCreight A, Camire O, Topolnik L, Skinner FK (2016) Using a Semi-Automated Strategy to Develop Multi-Compartment Models That Predict Biophysical Properties of Interneuron-Specific 3 (IS3) Cells in Hippocampus. eNeuro[PubMed]submitted materials
28Gupta R, Reneaux M, Karmeshu (2016) Role of Heterogeneous Macromolecular Crowding and Geometrical Irregularity at Central Excitatory Synapses in Shaping Synaptic Transmission. PLoS One 11:e0167505[PubMed]submitted materials
29Hass J, Hertag L, Durstewitz D (2016) A detailed data-driven network model of prefrontal cortex reproduces key features of in vivo activity PLoS Comput Biol 12(5):e1004930[PubMed]submitted materials
30Ho ECY, Truccolo W (2016) Interaction between Synaptic Inhibition and Glial-Potassium Dynamics leads to Diverse Seizure Transition Modes in Biophysical Models of Human Focal Seizures J Comput Neuroscisubmitted materials
31Hubel N, Andrew RD, Ullah G (2016) Large extracellular space leads to neuronal susceptibility to ischemic injury in a Na(+)/K (+) pumps-dependent manner. J Comput Neurosci 40:177-92[PubMed]submitted materials
32Hubel N, Ullah G (2016) Anions Govern Cell Volume: A Case Study of Relative Astrocytic and Neuronal Swelling in Spreading Depolarization. PLoS One 11:e0147060[PubMed]submitted materials
33Jedrzejewska-Szmek J, Damodaran S, Dorman DB, Blackwell KT (2016) Calcium dynamics predict direction of synaptic plasticity in striatal spiny projection neurons. Eur J Neurosci[PubMed]submitted materials
34Ji Y, Zhang YH, Zheng WM (2016) Modelling Spiking Neural Network from the Architecture Evaluation Perspective Journal of Computer Science and Technology 31:50-59obtained materials
34Ji Y, Zhang YH, Zheng WM (2016) Modelling Spiking Neural Network from the Architecture Evaluation Perspective Journal of Computer Science and Technology 31:50-59mentions
35Kastellakis G, Silva AJ, Poirazi P (2016) Linking Memories across Time via Neuronal and Dendritic Overlaps in Model Neurons with Active Dendrites. Cell Rep 17:1491-1504[PubMed]submitted materials
36Lombardo J, Harrington MA (2016) Non-reciprocal mechanisms of up- and down-regulation of spinal motoneuron excitability by modulators of KCNQ/Kv7 channels. J Neurophysiol :jn.00446.2016[PubMed]both
37Lytton WW, Seidenstein AH, Dura-Bernal S, McDougal RA, Schurmann F, Hines ML (2016) Simulation Neurotechnologies for Advancing Brain Research: Parallelizing Large Networks in NEURON. Neural Comput :1-28[PubMed]submitted materials
38Maki-Marttunen T, Halnes G, Devor A, Witoelar A, Bettella F, Djurovic S, Wang Y, Einevoll GT, (2016) Functional Effects of Schizophrenia-Linked Genetic Variants on Intrinsic Single-Neuron Excitability: A Modeling Study. Biol Psychiatry Cogn Neurosci Neuroimaging 1:49-59[PubMed]submitted materials
39Masquelier T, Portelli G, Kornprobst P (2016) Microsaccades enable efficient synchrony-based coding in the retina: a simulation study Scientific Reports 6:24086[PubMed]submitted materials
40Matsubara T, Torikai H (2016) An Asynchronous Recurrent Network of Cellular Automaton-Based Neurons and Its Reproduction of Spiking Neural Network Activities. IEEE Trans Neural Netw Learn Syst 27:836-52[PubMed]obtained materials
41McDougal RA, Bulanova AS, Lytton WW (2016) Reproducibility in computational neuroscience models and simulations Transactions on Biomedical Engineering, online before printmentions
42McDougal RA, Morse TM, Carnevale T, Marenco L, Wang R, Migliore M, Miller PL, Shepherd GM, Hi (2016) Twenty years of ModelDB and beyond: building essential modeling tools for the future of neuroscience. J Comput Neurosci[PubMed]mentions
43McIntyre AB, Cleland TA (2016) Biophysical constraints on lateral inhibition in the olfactory bulb. J Neurophysiol :jn.00671.2015[PubMed]obtained materials
44Migliore R, De Simone G, Leinekugel X, Migliore M (2016) The possible consequences for cognitive functions of external electric fields at power line frequency on hippocampal CA1 pyramidal neurons. Eur J Neurosci[PubMed]both
45Ness TV, Remme MW, Einevoll GT (2016) Active subthreshold dendritic conductances shape the local field potential. J Physiol 594:3809-25[PubMed]obtained materials
46Neymotin SA, Dura-Bernal S, Lakatos P, Sanger TD, Lytton WW (2016) Multitarget Multiscale Simulation for Pharmacological Treatment of Dystonia in Motor Cortex. Front Pharmacol 7:157[PubMed]both
47Neymotin SA, McDougal RA, Bulanova AS, Zeki M, Lakatos P, Terman D, Hines ML, Lytton WW (2016) Calcium regulation of HCN channels supports persistent activity in a multiscale model of neocortex Neuroscience 316:344-366[PubMed]both
48Osinski BL, Kay LM (2016) Granule cell excitability regulates gamma and beta oscillations in a model of the olfactory bulb dendrodendritic microcircuit. J Neurophysiol 116:522-539[PubMed]submitted materials
49Parasuram H, Nair B, D`Angelo E, Hines M, Naldi G, Diwakar S (2016) Computational modeling of single neuron extracellular electric potentials and network Local Field Potentials using LFPsim Front. Comput. Neurosci. 10:65both
50Salazar-Gatzimas E, Chen J, Creamer MS, Mano O, Mandel HB, Matulis CA, Pottackal J, Clark DA (2016) Direct Measurement of Correlation Responses in Drosophila Elementary Motion Detectors Reveals Fast Timescale Tuning. Neuron 92:227-239[PubMed]submitted materials
51Short SM, Morse TM, McTavish TS, Shepherd GM, Verhagen JV (2016) Respiration gates sensory input responses in the Mitral Cell layer of the Olfactory Bulb PLOS ONEboth
52Spera E, Migliore M, Unsworth N, Tegolo D (2016) On the cellular mechanisms underlying working memory capacity in humans Neural Network World 4:335-359submitted materials
53Sweeney Y, Clopath C (2016) Emergent spatial synaptic structure from diffusive plasticity. Eur J Neurosci :1-11[PubMed]submitted materials
54Teka W, Stockton D, Santamaria F (2016) Power-law dynamics of membrane conductances increase spiking diversity in a Hodgkin-Huxley model PLoS Comput Biol 12(3):e1004776submitted materials
55Waltemath D, Wolkenhauer O (2016) How Modeling Standards, Software, and Initiatives Support Reproducibility in Systems Biology and Systems Medicine. IEEE Trans Biomed Eng 63:1999-2006[PubMed]mentions
56Williams AH, O'Donnell C, Sejnowski TJ, O'Leary T (2016) Dendritic trafficking faces physiologically critical speed-precision tradeoffs. Elife[PubMed]obtained materials
57Wilmes KA, Sprekeler H, Schreiber S (2016) Inhibition as a Binary Switch for Excitatory Plasticity in Pyramidal Neurons. PLoS Comput Biol 12:e1004768[PubMed]submitted materials
58Zhang Y, Smolen P, Alberini CM, Baxter DA, Byrne JH (2016) Computational model of a positive BDNF feedback loop in hippocampal neurons following inhibitory avoidance training. Learn Mem 23:714-722[PubMed]submitted materials
59Allam SL, Bouteiller JM, Hu EY, Ambert N, Greget R, Bischoff S, Baudry M, Berger TW (2015) Synaptic Efficacy as a Function of Ionotropic Receptor Distribution: A Computational Study. PLoS One 10:e0140333[PubMed]submitted materials
60Anderson WD, Makadia HK, Greenhalgh AD, Schwaber JS, David S, Vadigepalli R (2015) Computational modeling of cytokine signaling in microglia. Mol Biosyst 11:3332-46[PubMed]submitted materials
61Anderson WD, Makadia HK, Vadigepalli R (2015) Molecular variability elicits a tunable switch with discrete neuromodulatory response phenotypes. J Comput Neurosci[PubMed]submitted materials
62Aumentado-Armstrong T, Metzen MG, Sproule MKJ, Chacron MJ (2015) Electrosensory midbrain neurons display feature invariant responses to natural communication stimuli PLoS Computational Biology 11(10):e1004430[PubMed]submitted materials
63Balbi P, Martinoia S, Massobrio P (2015) Axon-somatic back-propagation in detailed models of spinal alpha motoneurons Front. Comput. Neurosci. 9:15submitted materials
64Bartol TM, Keller DX, Kinney JP, Bajaj CL, Harris KM, Sejnowski TJ, Kennedy MB (2015) Computational reconstitution of spine calcium transients from individual proteins. Front Synaptic Neurosci 7:17[PubMed]obtained materials
65Briant LJ, Paton JF, Pickering AE, Champneys AR (2015) Modelling the vascular response to sympathetic postganglionic nerve activity. J Theor Biol 371:102-16[PubMed]obtained materials
66Bush D, Barry C, Manson D, Burgess N (2015) Using Grid Cells for Navigation Neuron 87:507-520submitted materials
67Carey RM, Sherwood WE, Shipley MT, Borisyuk A, Wachowiak M (2015) Role of intraglomerular circuits in shaping temporally structured responses to naturalistic inhalation-driven sensory input to the olfactory bulb. J Neurophysiol :jn.00394.2014[PubMed]submitted materials
68Chung B, Bacque-Cazenave J, Cofer DW, Cattaert D, Edwards DH (2015) The effect of sensory feedback on crayfish posture and locomotion: I. Experimental analysis of closing the loop. J Neurophysiol 113(6):1763-71[PubMed]submitted materials
69Coskren PJ, Luebke JI, Kabaso D, Wearne SL, Yadav A, Rumbell T, Hof PR, Weaver CM (2015) Functional consequences of age-related morphologic changes to pyramidal neurons of the rhesus monkey prefrontal cortex. J Comput Neurosci 38:263-83[PubMed]both
70Costa RP, Froemke RC, Sjöström PJ, van Rossum MCW (2015) Unified pre- and postsynaptic long-term plasticity enables reliable and flexible learning eLifesubmitted materials
71Damodaran S, Cressman JR, Jedrzejewski-Szmek Z, Blackwell KT (2015) Desynchronization of Fast-Spiking Interneurons Reduces beta-Band Oscillations and Imbalance in Firing in the Dopamine-Depleted Striatum. J Neurosci 35:1149-59[PubMed]submitted materials
72Dura-Bernal S, Zhou X, Neymotin SA, Przekwas A, Francis JT, Lytton WW (2015) Cortical Spiking Network Interfaced with Virtual Musculoskeletal Arm and Robotic Arm. Front Neurorobot 9:13[PubMed]submitted materials
73Egger R, Schmitt AC, Wallace DJ, Sakmann B, Oberlaender M, Kerr JND (2015) Robustness of sensory-evoked excitation is increased by inhibitory inputs to distal apical tuft dendrites PNAS 112(45):14072-7[PubMed]submitted materials
74Esposito U, Giugliano M, Vasilaki E (2015) Adaptation of short-term plasticity parameters via error-driven learning may explain the correlation between activity-dependent synaptic properties, connectivity motifs and target specificity. Front Comput Neurosci 8:175[PubMed]submitted materials
75Ferguson KA, Huh CY, Amilhon B, Manseau F, Williams S, Skinner FK (2015) Network models provide insights into how oriens-lacunosum-moleculare and bistratified cell interactions influence the power of local hippocampal CA1 theta oscillations. Front Syst Neurosci 9:110[PubMed]submitted materials
76Ferrante M, Ascoli GA (2015) Distinct and synergistic feedforward inhibition of pyramidal cells by basket and bistratified interneurons. Front Cell Neurosci 9:439[PubMed]submitted materials
77Fink CG, Gliske S, Catoni N, Stacey WC (2015) Disorders of the Nervous System Network Mechanisms Generating Abnormal and Normal Hippocampal High-Frequency Oscillations: A Computational Analysis eNeuro, epubsubmitted materials
78Forrest MD (2015) Simulation of alcohol action upon a detailed Purkinje neuron model and a simpler surrogate model that runs >400 times faster BMC Neuroscience 16:27[PubMed]submitted materials
79Garci­a-Grajales JA, Rucabado G, Garci­a-Dopico A, Pena JM, Jerusalem A (2015) Neurite, a Finite Difference Large Scale Parallel Program for the Simulation of Electrical Signal Propagation in Neurites under Mechanical Loading. PLoS One 10(2):e0116532[PubMed]submitted materials
80Gehring TV, Luksys G, Sandi C, Vasilaki E (2015) Detailed classification of swimming paths in the Morris Water Maze: multiple strategies within one trial Scientific Reports 5:14562[PubMed]submitted materials
81Gilra A, Bhalla US (2015) Bulbar microcircuit model predicts connectivity and roles of interneurons in odor coding. PLoS One 10:e0098045[PubMed]submitted materials
82Gunay C, Sieling FH, Dharmar L, Lin WH, Wolfram V, Marley R, Baines RA, Prinz AA (2015) Distal spike initiation zone location estimation by morphological simulation of ionic current filtering demonstrated in a novel model of an identified Drosophila motoneuron. PLoS Comput Biol 11:e1004189[PubMed]submitted materials
83Hay E, Segev I (2015) Dendritic excitability and gain control in recurrent cortical microcircuits Cerebral Cortex 25(10):3561-3571[PubMed]submitted materials
84Hyun JH, Eom K, Lee KH, Bae JY, Bae YC, Kim MH, Kim S, Ho WK, Lee SH (2015) Kv1.2 mediates heterosynaptic modulation of direct cortical synaptic inputs in CA3 pyramidal cells. J Physiol 593:3617-43[PubMed]both
85Jedlicka P, Benuskova L, Abraham WC (2015) A Voltage-Based STDP Rule Combined with Fast BCM-Like Metaplasticity Accounts for LTP and Concurrent “Heterosynaptic” LTD in the Dentate Gyrus In Vivo PLoS Computational Biology 11(11):e1004588[PubMed]submitted materials
86Keller D, Babai N, Kochubey O, Han Y, Markram H, Schürmann F, Schneggenburger R (2015) An Exclusion Zone for Ca2+ Channels around Docked Vesicles Explains Release Control by Multiple Channels at a CNS Synapse. PLoS Comput Biol 11:e1004253[PubMed]submitted materials
87Kim Y, Hsu CL, Cembrowski MS, Mensh BD, Spruston N (2015) Dendritic sodium spikes are required for long-term potentiation at distal synapses on hippocampal pyramidal neurons. Elife[PubMed]submitted materials
88Kubota Y, Kondo S, Nomura M, Hatada S, Yamaguchi N, Mohamed AA, Karube F, Lübke J, Kawaguchi (2015) Functional effects of distinct innervation styles of pyramidal cells by fast spiking cortical interneurons. Elife[PubMed]submitted materials
89Makadia HK, Schwaber JS, Vadigepalli R (2015) Intracellular Information Processing through Encoding and Decoding of Dynamic Signaling Features. PLoS Comput Biol 11:e1004563[PubMed]submitted materials
90McDougal RA, Morse TM, Hines ML, Shepherd GM (2015) ModelView for ModelDB: online presentation of model structure Neuroinformatics 13(4):459-70[PubMed]both
90McDougal RA, Morse TM, Hines ML, Shepherd GM (2015) ModelView for ModelDB: online presentation of model structure Neuroinformatics 13(4):459-70[PubMed]mentions
91Miceli F, Soldovieri MV, Ambrosino P, De Maria M, Migliore M, Migliore R, Taglialatela M (2015) Early-onset epileptic encephalopathy caused by gain-of-function mutations in the voltage sensor of Kv7.2 and Kv7.3 potassium channel subunits. J Neurosci 35:3782-93[PubMed]both
92Migliore M, Cavarretta F, Marasco A, Tulumello E, Hines ML, Shepherd GM (2015) Synaptic clusters function as odor operators in the olfactory bulb PNAS 112:8499-8504[PubMed]submitted materials
93Migliore M, De Simone G, Migliore R (2015) Effect of the Initial Synaptic State on the Probability to Induce Long-Term Potentiation and Depression Biophysical Journal 108:1038-1046[PubMed]submitted materials
94Nakano T, Otsuka M, Yoshimoto J, Doya K (2015) A spiking neural network model of model-free reinforcement learning with high-dimensional sensory input and perceptual ambiguity. PLoS One 10:e0115620[PubMed]submitted materials
95Neymotin SA, McDougal RA, Sherif MA, Fall CP, Hines ML, Lytton WW (2015) Neuronal calcium wave propagation varies with changes in endoplasmic reticulum parameters: a computer model Neural Computation 27(4):898-924[PubMed]submitted materials
96Nichols EJ, Hutt A (2015) Neural field simulator: two-dimensional spatio-temporal dynamics involving finite transmission speed. Front Neuroinform. 9:25[PubMed]submitted materials
97Poleg-Polsky A (2015) Effects of Neural Morphology and Input Distribution on Synaptic Processing by Global and Focal NMDA-spikes PLOS One 10(10):e0140254[PubMed]both
98Powers RK, Heckman CJ (2015) Contribution of intrinsic motoneuron properties to discharge hysteresis and its estimation based on paired motor unit recordings. A simulation study. J Neurophysiol 114:184-198[PubMed]submitted materials
99Reznik RI, Barreto E, Sander E, So P (2015) Effects of polarization induced by non-weak electric fields on the excitability of elongated neurons with active dendrites. J Comput Neurosci[PubMed]submitted materials
100Sadeh S, Clopath C, Rotter S (2015) Emergence of Functional Specificity in Balanced Networks with Synaptic Plasticity. PLoS Comput Biol 11:e1004307[PubMed]submitted materials
101Saudargiene A, Cobb S, Graham BP (2015) A computational study on plasticity during theta cycles at Schaffer collateral synapses on CA1 pyramidal cells in the hippocampus. Hippocampus 25:208-18[PubMed]both
102Shai AS, Anastassiou CA, Larkum ME, Koch C (2015) Physiology of layer 5 pyramidal neurons in mouse primary visual cortex: coincidence detection through bursting. PLoS Comput Biol 11:e1004090[PubMed]both
103Simmonds B, Chacron MJ (2015) Activation of parallel fiber feedback by spatially diffuse stimuli simultaneously reduces signal and noise correlations via independent mechanisms in a cerebellum-like structure PLoS Comp Biol 11(1):e1004034[PubMed]submitted materials
104Solari F, Chessa M, Medathati NVK, Kornprobst P (2015) What can we expect from a V1-MT feedforward architecture for optical flow estimation? Signal Processing: Image Communicationsubmitted materials
105Städele C, Heigele S, Stein W (2015) Neuromodulation to the rescue: compensation of temperature-induced breakdown of rhythmic motor patterns via extrinsic neuromodulatory input Plos Biology 13(9):e1002265[PubMed]submitted materials
106Toporikova N, Chevalier M, Thoby-Brisson M (2015) Sigh and eupnea rhythmogenesis involves distinct interconnected subpopulations: a combined computational and experimental study eNeuro 2(2):1-18[PubMed]submitted materials
107Trieu BH, Kramár EA, Cox CD, Jia Y, Wang W, Gall CM, Lynch G (2015) Pronounced differences in signal processing and synaptic plasticity between piriform-hippocampal network stages: A prominent role for adenosine Journal of Physiology 593(13):2889-907[PubMed]submitted materials
108Vich C, Guillamon A (2015) Dissecting estimation of conductances in subthreshold regimes. J Comput Neurosci 39:271-287[PubMed]submitted materials
109Wimmer K, Compte A, Roxin A, Peixoto D, Renart A, de la Rocha J (2015) Sensory integration dynamics in a hierarchical network explains choice probabilities in cortical area MT. Nat Commun 6:6177[PubMed]submitted materials
110Yim MY, Hanuschkin A, Wolfart J (2015) Intrinsic rescaling of granule cells restores pattern separation ability of a dentate gyrus network model during epileptic hyperexcitability. Hippocampus 25:297-308[PubMed]both
111Zhao X, Robinson PA (2015) Generalized seizures in a neural field model with bursting dynamics. J Comput Neurosci[PubMed]submitted materials
112Zylbertal A, Kahan A, Ben-Shaul Y, Yarom Y, Wagner S (2015) Prolonged Intracellular Na+ Dynamics Govern Electrical Activity in Accessory Olfactory Bulb Mitral Cells PLOS Biology 13(12):e1002319both
113Allken V, Chepkoech J-L, Einevoll GT, Halnes G (2014) The subcellular distribution of T-type Ca++ channels in interneurons of the lateral geniculate nucleus PLoS ONE 9(9):e107780[PubMed]submitted materials
114Almog M, Korngreen A (2014) A Quantitative Description of Dendritic Conductances and Its Application to Dendritic Excitation in Layer 5 Pyramidal Neurons J Neurosci 34(1):182-196both
115Antunes G, Sebastiao AM, Simoes de Souza FM (2014) Mechanisms of regulation of olfactory transduction and adaptation in the olfactory cilium. PLoS One 9:e105531[PubMed]submitted materials
116Anwar H, Roome CJ, Nedelescu H, Chen W, Kuhn B, De Schutter E (2014) Dendritic diameters affect the spatial variability of intracellular calcium dynamics in computer models Frontiers in Cellular Neuroscience 8(168):1-14[PubMed]submitted materials
117Arbib MA, Plangprasopchok A, Bonaiuto J, Schuler RE (2014) A neuroinformatics of brain modeling and its implementation in the Brain Operation Database BODB. Neuroinformatics 12:5-26[PubMed]mentions
118Avella Gonzalez OJ, Van Aerde KI, Mansvelder HD, Van Pelt J, Van Ooyen A (2014) Inter-network interactions: impact of connections between oscillatory neuronal networks on oscillation frequency and pattern PloS ONE 9(7):e100899[PubMed]submitted materials
119Bacque-Cazenave J, Chung B, Cofer DW, Cattaert D, Edwards DH (2014) The effect of sensory feedback on crayfish posture and locomotion. II. Neuromechanical simulation of closing the loop. J Neurophysiol :jn.00870.2014[PubMed]submitted materials
120Balbi P, Martinoia S, Colombo R, Massobrio P (2014) Modelling recurrent discharge in the spinal a-motoneuron: Reappraisal of the F wave Clin Neurophysiol 125(2):427-9[PubMed]submitted materials
121Behabadi BF, Mel BW (2014) Mechanisms underlying subunit independence in pyramidal neuron dendrites. Proc Natl Acad Sci U S A 111:498-503[PubMed]obtained materials
122Bianchi D, De Michele P, Marchetti C, Tirozzi B, Cuomo S, Marie H, Migliore M (2014) Effects of increasing CREB-dependent transcription on the storage and recall processes in a hippocampal CA1 microcircuit. Hippocampus 24:165-77[PubMed]both
123Briant LJ, Stalbovskiy AO, Nolan MF, Champneys AR, Pickering AE (2014) Increased intrinsic excitability of muscle vasoconstrictor preganglionic neurons may contribute to the elevated sympathetic activity in hypertensive rats. J Neurophysiol 112:2756-2778[PubMed]submitted materials
124Briley PM, Summerfield AQ (2014) Age-related deterioration of the representation of space in human auditory cortex Neurobiology of Aging 35(3):633-644[PubMed]submitted materials
125Caplan JS, Williams AH, Marder E (2014) Many parameter sets in a multicompartment model oscillator are robust to temperature perturbations J Neurosci. 34(14):496-75[PubMed]submitted materials
126Casaleggio A, Hines ML, Migliore M (2014) Computational model of erratic arrhythmias in a cardiac cell network: the role of gap junctions. PLoS One 9:e100288[PubMed]both
127Casellato C, Antonietti A, Garrido JA, Carrillo RR, Luque NR, Ros E, Pedrocchi A, D`Angelo E (2014) Adaptive Robotic Control Driven by a Versatile Spiking Cerebellar Network. PLoS One 9:e112265[PubMed]submitted materials
128Castro L, Aguiar P (2014) A feedforward model for the formation of a grid field where spatial information is provided solely from place cells. Biol Cybern 108:133-43[PubMed]submitted materials
129Cavallari S, Panzeri S, Mazzoni A (2014) Comparison of the dynamics of neural interactions between current-based and conductance-based integrate-and-fire recurrent networks Frontiers in Neural Circuits 8:12submitted materials
130Cavarretta F, Carnevale NT, Tegolo D, Migliore M (2014) Effects of low frequency electric fields on synaptic integration in hippocampal CA1 pyramidal neurons: implications for power line emissions Front. Cell. Neurosci. 8:310both
131Chadderdon GL, Mohan A, Suter BA, Neymotin SA, Kerr CC, Francis JT, Shepherd GM, Lytton WW (2014) Motor cortex microcircuit simulation based on brain activity mapping. Neural Comput 26:1239-62[PubMed]submitted materials
132Chen M, Guo D, Wang T, Jing W, Xia Y, Xu P, Luo C, Valdes-Sosa PA, Yao D (2014) Bidirectional control of absence seizures by the Basal Ganglia: a computational evidence PLoS Computational Biology 10(3):e1003495[PubMed]submitted materials
133Chen W, De Schutter E (2014) Python-based geometry preparation and simulation visualization toolkits for STEPS Front. Neuroinform. 8:37submitted materials
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557Gasparini S, Migliore M, Magee JC (2004) On the initiation and propagation of dendritic spikes in CA1 pyramidal neurons. J Neurosci 24:11046-11056[PubMed]both
558Heilman AD, Quattrochi J (2004) Computational models of epileptiform activity in single neurons. Biosystems 78:1-21[PubMed]obtained materials
559Hines ML, Carnevale NT (2004) Discrete event simulation in the NEURON environment. Neurocomputing 58-60:1117-1122mentions
560Hines ML, Morse T, Migliore M, Carnevale NT, Shepherd GM (2004) ModelDB: A Database to Support Computational Neuroscience. J Comput Neurosci 17:7-11[PubMed]mentions
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564Crasto CJ, Marenco LN, Migliore M, Mao B, Nadkarni PM, Miller P, Shepherd GM (2003) Text mining neuroscience journal articles to populate neuroscience databases. Neuroinformatics 1:215-37[PubMed]mentions
565D'Alessandro G (2003) Axiope: data sharing using distributed catalogs. Neuroinformatics 1:285-8[PubMed]mentions
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567Graham LJ (2003) ModelDB, neuroinformatics, and computational neuroscience. Neuroinformatics 1:141-4[PubMed]mentions
568Marenco L, Tosches N, Crasto C, Shepherd G, Miller PL, Nadkarni PM (2003) Achieving evolvable Web-database bioscience applications using the EAV-CR framework: recent advances. J Am Med Inform Assoc 10:444-53[PubMed]mentions
569Migliore M (2003) On the Integration of Subthreshold Inputs from Perforant Path and Schaffer Collaterals in Hippocampal CA1 Pyramidal Neurons. J Comput Neurosci 14:185-192[PubMed]submitted materials
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571Migliore M, Shepherd GM (2002) Emerging rules for the distributions of active dendritic conductances. Nature Review Neuroscience 3:362-70[PubMed]submitted materials
572Watanabe S, Hoffman DA, Migliore M, Johnston D (2002) Dendritic K+ channels contribute to spike-timing dependent long-term potentiation in hippocampal pyramidal neurons. Proc Natl Acad Sci U S A 99:8366-8371[PubMed]both
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576Shepherd GM, Mirsky JS, Healy MD, Singer MS, Skoufos E, Hines MS, Nadkarni PM, Miller PL (1998) The Human Brain Project: neuroinformatics tools for integrating, searching and modeling multidisciplinary neuroscience data. Trends Neurosci 21:460-8[PubMed]mentions
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578Chay A, Zamparo I, Koschinski A, Zaccolo M, Blackwell KT (2016) Control of betaAR- and N-methyl-D-aspartate (NMDA) Receptor-Dependent cAMP Dynamics in Hippocampal Neurons PLoS Computational Biology 12(2):e1004735[PubMed]submitted materials