Papers that obtained or contributed code in ModelDB

These papers state (in text) they used or contributed code to ModelDB or both
or they mention ModelDB in a neuroinformatics infrastructure context.

1Bird AD, Cuntz H (2016) Optimal Current Transfer in Dendrites. PLoS Comput Biol 12:e1004897[PubMed]obtained materials
2Bloss EB, Cembrowski MS, Karsh B, Colonell J, Fetter RD, Spruston N (2016) Structured Dendritic Inhibition Supports Branch-Selective Integration in CA1 Pyramidal Cells. Neuron[PubMed]submitted materials
3Dover K, Marra C, Solinas S, Popovic M, Subramaniyam S, Zecevic D, D'Angelo E, Goldfarb M (2016) FHF-independent conduction of action potentials along the leak-resistant cerebellar granule cell axon. Nat Commun 7:12895[PubMed]submitted materials
4Dura-Bernal S, Li K, Neymotin SA, Francis JT, Principe JC, Lytton WW (2016) Restoring behavior via inverse neurocontroller in a lesioned cortical spiking model driving a virtual arm. Front. Neurosci. Neuroprosthetics 10:28submitted materials
5Enrico P, Migliore M, Spiga S, Mulas G, Caboni F, Diana M (2016) Morphofunctional alterations in ventral tegmental area dopamine neurons in acute and prolonged opiates withdrawal. A computational perspective. Neuroscience 322:195-207[PubMed]both
6Fietkiewicz C, Loparo KA (2016) Analysis and Enhancements of a Prolific Macroscopic Model of Epilepsy. Scientifica (Cairo) 2016:3628247[PubMed]both
7Fietkiewicz C, Shafer GO, Platt EA, Wilson CG (2016) Variability in respiratory rhythm generation: In vitro and in silico models Communications in Nonlinear Science and Numerical Simulation 32:158-168submitted materials
8Fribance S, Wang J, Roppolo JR, de Groat WC, Tai C (2016) Axonal model for temperature stimulation. J Comput Neurosci[PubMed]submitted materials
9Goldwyn JH, Rinzel J (2016) Neuronal coupling by endogenous electric fields: Cable theory and applications to coincidence detector neurons in the auditory brainstem. J Neurophysiol :jn.00780.2015[PubMed]submitted materials
10Hass J, Hertag L, Durstewitz D (2016) A detailed data-driven network model of prefrontal cortex reproduces key features of in vivo activity PLoS Comput Biol 12(5):e1004930[PubMed]submitted materials
11Ho ECY, Truccolo W (2016) Interaction between Synaptic Inhibition and Glial-Potassium Dynamics leads to Diverse Seizure Transition Modes in Biophysical Models of Human Focal Seizures J Comput Neuroscisubmitted materials
12Hubel N, Andrew RD, Ullah G (2016) Large extracellular space leads to neuronal susceptibility to ischemic injury in a Na(+)/K (+) pumps-dependent manner. J Comput Neurosci 40:177-92[PubMed]submitted materials
13Hubel N, Ullah G (2016) Anions Govern Cell Volume: A Case Study of Relative Astrocytic and Neuronal Swelling in Spreading Depolarization. PLoS One 11:e0147060[PubMed]submitted materials
14Jedrzejewska-Szmek J, Damodaran S, Dorman DB, Blackwell KT (2016) Calcium dynamics predict direction of synaptic plasticity in striatal spiny projection neurons. Eur J Neurosci[PubMed]submitted materials
15Lombardo J, Harrington MA (2016) Non-reciprocal mechanisms of up- and down-regulation of spinal motoneuron excitability by modulators of KCNQ/Kv7 channels. J Neurophysiol :jn.00446.2016[PubMed]both
16Lytton WW, Seidenstein AH, Dura-Bernal S, McDougal RA, Schurmann F, Hines ML (2016) Simulation Neurotechnologies for Advancing Brain Research: Parallelizing Large Networks in NEURON. Neural Comput :1-28[PubMed]submitted materials
17Maki-Marttunen T, Halnes G, Devor A, Witoelar A, Bettella F, Djurovic S, Wang Y, Einevoll GT, (2016) Functional Effects of Schizophrenia-Linked Genetic Variants on Intrinsic Single-Neuron Excitability: A Modeling Study. Biol Psychiatry Cogn Neurosci Neuroimaging 1:49-59[PubMed]submitted materials
18Masquelier T, Portelli G, Kornprobst P (2016) Microsaccades enable efficient synchrony-based coding in the retina: a simulation study Scientific Reports 6:24086[PubMed]submitted materials
19McDougal RA, Bulanova AS, Lytton WW (2016) Reproducibility in computational neuroscience models and simulations Transactions on Biomedical Engineering, online before printmentions
20McDougal RA, Morse TM, Carnevale T, Marenco L, Wang R, Migliore M, Miller PL, Shepherd GM, Hi (2016) Twenty years of ModelDB and beyond: building essential modeling tools for the future of neuroscience. J Comput Neurosci[PubMed]mentions
21McIntyre AB, Cleland TA (2016) Biophysical constraints on lateral inhibition in the olfactory bulb. J Neurophysiol :jn.00671.2015[PubMed]obtained materials
22Migliore R, De Simone G, Leinekugel X, Migliore M (2016) The possible consequences for cognitive functions of external electric fields at power line frequency on hippocampal CA1 pyramidal neurons. Eur J Neurosci[PubMed]both
23Ness TV, Remme MW, Einevoll GT (2016) Active subthreshold dendritic conductances shape the local field potential. J Physiol 594:3809-25[PubMed]obtained materials
24Neymotin SA, Dura-Bernal S, Lakatos P, Sanger TD, Lytton WW (2016) Multitarget Multiscale Simulation for Pharmacological Treatment of Dystonia in Motor Cortex. Front Pharmacol 7:157[PubMed]both
25Neymotin SA, McDougal RA, Bulanova AS, Zeki M, Lakatos P, Terman D, Hines ML, Lytton WW (2016) Calcium regulation of HCN channels supports persistent activity in a multiscale model of neocortex Neuroscience 316:344-366[PubMed]both
26Osinski BL, Kay LM (2016) Granule cell excitability regulates gamma and beta oscillations in a model of the olfactory bulb dendrodendritic microcircuit. J Neurophysiol 116:522-539[PubMed]submitted materials
27Parasuram H, Nair B, D`Angelo E, Hines M, Naldi G, Diwakar S Computational modeling of single neuron extracellular electric potentials and network Local Field Potentials using LFPsim Front. Comput. Neurosci. 10:65both
28Salazar-Gatzimas E, Chen J, Creamer MS, Mano O, Mandel HB, Matulis CA, Pottackal J, Clark DA (2016) Direct Measurement of Correlation Responses in Drosophila Elementary Motion Detectors Reveals Fast Timescale Tuning. Neuron 92:227-239[PubMed]submitted materials
29Sweeney Y, Clopath C (2016) Emergent spatial synaptic structure from diffusive plasticity. Eur J Neurosci :1-11[PubMed]submitted materials
30Teka W, Stockton D, Santamaria F (2016) Power-law dynamics of membrane conductances increase spiking diversity in a Hodgkin-Huxley model PLoS Comput Biol 12(3):e1004776submitted materials
31Wilmes KA, Sprekeler H, Schreiber S (2016) Inhibition as a Binary Switch for Excitatory Plasticity in Pyramidal Neurons. PLoS Comput Biol 12:e1004768[PubMed]submitted materials
32Allam SL, Bouteiller JM, Hu EY, Ambert N, Greget R, Bischoff S, Baudry M, Berger TW (2015) Synaptic Efficacy as a Function of Ionotropic Receptor Distribution: A Computational Study. PLoS One 10:e0140333[PubMed]submitted materials
33Anderson WD, Makadia HK, Greenhalgh AD, Schwaber JS, David S, Vadigepalli R (2015) Computational modeling of cytokine signaling in microglia. Mol Biosyst 11:3332-46[PubMed]submitted materials
34Anderson WD, Makadia HK, Vadigepalli R (2015) Molecular variability elicits a tunable switch with discrete neuromodulatory response phenotypes. J Comput Neurosci[PubMed]submitted materials
35Aumentado-Armstrong T, Metzen MG, Sproule MKJ, Chacron MJ (2015) Electrosensory midbrain neurons display feature invariant responses to natural communication stimuli PLoS Computational Biology 11(10):e1004430[PubMed]submitted materials
36Balbi P, Martinoia S, Massobrio P (2015) Axon-somatic back-propagation in detailed models of spinal alpha motoneurons Front. Comput. Neurosci. 9:15submitted materials
37Bartol TM, Keller DX, Kinney JP, Bajaj CL, Harris KM, Sejnowski TJ, Kennedy MB (2015) Computational reconstitution of spine calcium transients from individual proteins. Front Synaptic Neurosci 7:17[PubMed]obtained materials
38Briant LJ, Paton JF, Pickering AE, Champneys AR (2015) Modelling the vascular response to sympathetic postganglionic nerve activity. J Theor Biol 371:102-16[PubMed]obtained materials
39Bush D, Barry C, Manson D, Burgess N (2015) Using Grid Cells for Navigation Neuron 87:507-520submitted materials
40Carey RM, Sherwood WE, Shipley MT, Borisyuk A, Wachowiak M (2015) Role of intraglomerular circuits in shaping temporally structured responses to naturalistic inhalation-driven sensory input to the olfactory bulb. J Neurophysiol :jn.00394.2014[PubMed]submitted materials
41Chung B, Bacque-Cazenave J, Cofer DW, Cattaert D, Edwards DH (2015) The effect of sensory feedback on crayfish posture and locomotion: I. Experimental analysis of closing the loop. J Neurophysiol 113(6):1763-71[PubMed]submitted materials
42Coskren PJ, Luebke JI, Kabaso D, Wearne SL, Yadav A, Rumbell T, Hof PR, Weaver CM (2015) Functional consequences of age-related morphologic changes to pyramidal neurons of the rhesus monkey prefrontal cortex. J Comput Neurosci 38:263-83[PubMed]both
43Costa RP, Froemke RC, Sjöström PJ, van Rossum MCW (2015) Unified pre- and postsynaptic long-term plasticity enables reliable and flexible learning eLifesubmitted materials
44Damodaran S, Cressman JR, Jedrzejewski-Szmek Z, Blackwell KT (2015) Desynchronization of Fast-Spiking Interneurons Reduces beta-Band Oscillations and Imbalance in Firing in the Dopamine-Depleted Striatum. J Neurosci 35:1149-59[PubMed]submitted materials
45Dura-Bernal S, Zhou X, Neymotin SA, Przekwas A, Francis JT, Lytton WW (2015) Cortical Spiking Network Interfaced with Virtual Musculoskeletal Arm and Robotic Arm. Front Neurorobot 9:13[PubMed]submitted materials
46Egger R, Schmitt AC, Wallace DJ, Sakmann B, Oberlaender M, Kerr JND (2015) Robustness of sensory-evoked excitation is increased by inhibitory inputs to distal apical tuft dendrites PNAS 112(45):14072-7[PubMed]submitted materials
47Esposito U, Giugliano M, Vasilaki E (2015) Adaptation of short-term plasticity parameters via error-driven learning may explain the correlation between activity-dependent synaptic properties, connectivity motifs and target specificity. Front Comput Neurosci 8:175[PubMed]submitted materials
48Ferguson KA, Huh CY, Amilhon B, Manseau F, Williams S, Skinner FK (2015) Network models provide insights into how oriens-lacunosum-moleculare and bistratified cell interactions influence the power of local hippocampal CA1 theta oscillations. Front Syst Neurosci 9:110[PubMed]submitted materials
49Fink CG, Gliske S, Catoni N, Stacey WC (2015) Disorders of the Nervous System Network Mechanisms Generating Abnormal and Normal Hippocampal High-Frequency Oscillations: A Computational Analysis eNeuro, epubsubmitted materials
50Forrest MD (2015) Simulation of alcohol action upon a detailed Purkinje neuron model and a simpler surrogate model that runs >400 times faster BMC Neuroscience 16:27[PubMed]submitted materials
51Garci­a-Grajales JA, Rucabado G, Garci­a-Dopico A, Pena JM, Jerusalem A (2015) Neurite, a Finite Difference Large Scale Parallel Program for the Simulation of Electrical Signal Propagation in Neurites under Mechanical Loading. PLoS One 10(2):e0116532[PubMed]submitted materials
52Gehring TV, Luksys G, Sandi C, Vasilaki E (2015) Detailed classification of swimming paths in the Morris Water Maze: multiple strategies within one trial Scientific Reports 5:14562[PubMed]submitted materials
53Gilra A, Bhalla US (2015) Bulbar microcircuit model predicts connectivity and roles of interneurons in odor coding. PLoS One 10:e0098045[PubMed]submitted materials
54Gunay C, Sieling FH, Dharmar L, Lin WH, Wolfram V, Marley R, Baines RA, Prinz AA (2015) Distal spike initiation zone location estimation by morphological simulation of ionic current filtering demonstrated in a novel model of an identified Drosophila motoneuron. PLoS Comput Biol 11:e1004189[PubMed]submitted materials
55Hay E, Segev I (2015) Dendritic excitability and gain control in recurrent cortical microcircuits Cerebral Cortex 25(10):3561-3571[PubMed]submitted materials
56Hyun JH, Eom K, Lee KH, Bae JY, Bae YC, Kim MH, Kim S, Ho WK, Lee SH (2015) Kv1.2 mediates heterosynaptic modulation of direct cortical synaptic inputs in CA3 pyramidal cells. J Physiol 593:3617-43[PubMed]both
57Jedlicka P, Benuskova L, Abraham WC (2015) A Voltage-Based STDP Rule Combined with Fast BCM-Like Metaplasticity Accounts for LTP and Concurrent “Heterosynaptic” LTD in the Dentate Gyrus In Vivo PLoS Computational Biology 11(11):e1004588[PubMed]submitted materials
58Keller D, Babai N, Kochubey O, Han Y, Markram H, Schürmann F, Schneggenburger R (2015) An Exclusion Zone for Ca2+ Channels around Docked Vesicles Explains Release Control by Multiple Channels at a CNS Synapse. PLoS Comput Biol 11:e1004253[PubMed]submitted materials
59Kim Y, Hsu CL, Cembrowski MS, Mensh BD, Spruston N (2015) Dendritic sodium spikes are required for long-term potentiation at distal synapses on hippocampal pyramidal neurons. Elife[PubMed]submitted materials
60Kubota Y, Kondo S, Nomura M, Hatada S, Yamaguchi N, Mohamed AA, Karube F, Lübke J, Kawaguchi (2015) Functional effects of distinct innervation styles of pyramidal cells by fast spiking cortical interneurons. Elife[PubMed]submitted materials
61Makadia HK, Schwaber JS, Vadigepalli R (2015) Intracellular Information Processing through Encoding and Decoding of Dynamic Signaling Features. PLoS Comput Biol 11:e1004563[PubMed]submitted materials
62McDougal RA, Morse TM, Hines ML, Shepherd GM (2015) ModelView for ModelDB: online presentation of model structure Neuroinformatics 13(4):459-70[PubMed]both
62McDougal RA, Morse TM, Hines ML, Shepherd GM (2015) ModelView for ModelDB: online presentation of model structure Neuroinformatics 13(4):459-70[PubMed]mentions
63Miceli F, Soldovieri MV, Ambrosino P, De Maria M, Migliore M, Migliore R, Taglialatela M (2015) Early-onset epileptic encephalopathy caused by gain-of-function mutations in the voltage sensor of Kv7.2 and Kv7.3 potassium channel subunits. J Neurosci 35:3782-93[PubMed]both
64Migliore M, Cavarretta F, Marasco A, Tulumello E, Hines ML, Shepherd GM (2015) Synaptic clusters function as odor operators in the olfactory bulb PNAS 112:8499-8504[PubMed]submitted materials
65Migliore M, De Simone G, Migliore R (2015) Effect of the Initial Synaptic State on the Probability to Induce Long-Term Potentiation and Depression Biophysical Journal 108:1038-1046[PubMed]submitted materials
66Nakano T, Otsuka M, Yoshimoto J, Doya K (2015) A spiking neural network model of model-free reinforcement learning with high-dimensional sensory input and perceptual ambiguity. PLoS One 10:e0115620[PubMed]submitted materials
67Neymotin SA, McDougal RA, Sherif MA, Fall CP, Hines ML, Lytton WW (2015) Neuronal calcium wave propagation varies with changes in endoplasmic reticulum parameters: a computer model Neural Computation 27(4):898-924[PubMed]submitted materials
68Nichols EJ, Hutt A (2015) Neural field simulator: two-dimensional spatio-temporal dynamics involving finite transmission speed. Front Neuroinform. 9:25[PubMed]submitted materials
69Poleg-Polsky A (2015) Effects of Neural Morphology and Input Distribution on Synaptic Processing by Global and Focal NMDA-spikes PLOS One 10(10):e0140254[PubMed]both
70Powers RK, Heckman CJ (2015) Contribution of intrinsic motoneuron properties to discharge hysteresis and its estimation based on paired motor unit recordings. A simulation study. J Neurophysiol 114:184-198[PubMed]submitted materials
71Reznik RI, Barreto E, Sander E, So P (2015) Effects of polarization induced by non-weak electric fields on the excitability of elongated neurons with active dendrites. J Comput Neurosci[PubMed]submitted materials
72Sadeh S, Clopath C, Rotter S (2015) Emergence of Functional Specificity in Balanced Networks with Synaptic Plasticity. PLoS Comput Biol 11:e1004307[PubMed]submitted materials
73Saudargiene A, Cobb S, Graham BP (2015) A computational study on plasticity during theta cycles at Schaffer collateral synapses on CA1 pyramidal cells in the hippocampus. Hippocampus 25:208-18[PubMed]both
74Shai AS, Anastassiou CA, Larkum ME, Koch C (2015) Physiology of layer 5 pyramidal neurons in mouse primary visual cortex: coincidence detection through bursting. PLoS Comput Biol 11:e1004090[PubMed]both
75Simmonds B, Chacron MJ (2015) Activation of parallel fiber feedback by spatially diffuse stimuli simultaneously reduces signal and noise correlations via independent mechanisms in a cerebellum-like structure PLoS Comp Biol 11(1):e1004034[PubMed]submitted materials
76Solari F, Chessa M, Medathati NVK, Kornprobst P (2015) What can we expect from a V1-MT feedforward architecture for optical flow estimation? Signal Processing: Image Communicationsubmitted materials
77Städele C, Heigele S, Stein W (2015) Neuromodulation to the rescue: compensation of temperature-induced breakdown of rhythmic motor patterns via extrinsic neuromodulatory input Plos Biology 13(9):e1002265[PubMed]submitted materials
78Toporikova N, Chevalier M, Thoby-Brisson M (2015) Sigh and eupnea rhythmogenesis involves distinct interconnected subpopulations: a combined computational and experimental study eNeuro 2(2):1-18[PubMed]submitted materials
79Trieu BH, Kramár EA, Cox CD, Jia Y, Wang W, Gall CM, Lynch G (2015) Pronounced differences in signal processing and synaptic plasticity between piriform-hippocampal network stages: A prominent role for adenosine Journal of Physiology 593(13):2889-907[PubMed]submitted materials
80Vich C, Guillamon A (2015) Dissecting estimation of conductances in subthreshold regimes. J Comput Neurosci 39:271-287[PubMed]submitted materials
81Wimmer K, Compte A, Roxin A, Peixoto D, Renart A, de la Rocha J (2015) Sensory integration dynamics in a hierarchical network explains choice probabilities in cortical area MT. Nat Commun 6:6177[PubMed]submitted materials
82Yim MY, Hanuschkin A, Wolfart J (2015) Intrinsic rescaling of granule cells restores pattern separation ability of a dentate gyrus network model during epileptic hyperexcitability. Hippocampus 25:297-308[PubMed]both
83Zhao X, Robinson PA (2015) Generalized seizures in a neural field model with bursting dynamics. J Comput Neurosci[PubMed]submitted materials
84Zylbertal A, Kahan A, Ben-Shaul Y, Yarom Y, Wagner S (2015) Prolonged Intracellular Na+ Dynamics Govern Electrical Activity in Accessory Olfactory Bulb Mitral Cells PLOS Biology 13(12):e1002319both
85Allken V, Chepkoech J-L, Einevoll GT, Halnes G (2014) The subcellular distribution of T-type Ca++ channels in interneurons of the lateral geniculate nucleus PLoS ONE 9(9):e107780[PubMed]submitted materials
86Almog M, Korngreen A (2014) A Quantitative Description of Dendritic Conductances and Its Application to Dendritic Excitation in Layer 5 Pyramidal Neurons J Neurosci 34(1):182-196both
87Antunes G, Sebastiao AM, Simoes de Souza FM (2014) Mechanisms of regulation of olfactory transduction and adaptation in the olfactory cilium. PLoS One 9:e105531[PubMed]submitted materials
88Anwar H, Roome CJ, Nedelescu H, Chen W, Kuhn B, De Schutter E (2014) Dendritic diameters affect the spatial variability of intracellular calcium dynamics in computer models Frontiers in Cellular Neuroscience 8(168):1-14[PubMed]submitted materials
89Arbib MA, Plangprasopchok A, Bonaiuto J, Schuler RE (2014) A neuroinformatics of brain modeling and its implementation in the Brain Operation Database BODB. Neuroinformatics 12:5-26[PubMed]mentions
90Avella Gonzalez OJ, Van Aerde KI, Mansvelder HD, Van Pelt J, Van Ooyen A (2014) Inter-network interactions: impact of connections between oscillatory neuronal networks on oscillation frequency and pattern PloS ONE 9(7):e100899[PubMed]submitted materials
91Bacque-Cazenave J, Chung B, Cofer DW, Cattaert D, Edwards DH (2014) The effect of sensory feedback on crayfish posture and locomotion. II. Neuromechanical simulation of closing the loop. J Neurophysiol :jn.00870.2014[PubMed]submitted materials
92Balbi P, Martinoia S, Colombo R, Massobrio P (2014) Modelling recurrent discharge in the spinal a-motoneuron: Reappraisal of the F wave Clin Neurophysiol 125(2):427-9[PubMed]submitted materials
93Behabadi BF, Mel BW (2014) Mechanisms underlying subunit independence in pyramidal neuron dendrites. Proc Natl Acad Sci U S A 111:498-503[PubMed]obtained materials
94Bianchi D, De Michele P, Marchetti C, Tirozzi B, Cuomo S, Marie H, Migliore M (2014) Effects of increasing CREB-dependent transcription on the storage and recall processes in a hippocampal CA1 microcircuit. Hippocampus 24:165-77[PubMed]both
95Briant LJ, Stalbovskiy AO, Nolan MF, Champneys AR, Pickering AE (2014) Increased intrinsic excitability of muscle vasoconstrictor preganglionic neurons may contribute to the elevated sympathetic activity in hypertensive rats. J Neurophysiol 112:2756-2778[PubMed]submitted materials
96Briley PM, Summerfield AQ (2014) Age-related deterioration of the representation of space in human auditory cortex Neurobiology of Aging 35(3):633-644[PubMed]submitted materials
97Caplan JS, Williams AH, Marder E (2014) Many parameter sets in a multicompartment model oscillator are robust to temperature perturbations J Neurosci. 34(14):496-75[PubMed]submitted materials
98Casaleggio A, Hines ML, Migliore M (2014) Computational model of erratic arrhythmias in a cardiac cell network: the role of gap junctions. PLoS One 9:e100288[PubMed]both
99Casellato C, Antonietti A, Garrido JA, Carrillo RR, Luque NR, Ros E, Pedrocchi A, D`Angelo E (2014) Adaptive Robotic Control Driven by a Versatile Spiking Cerebellar Network. PLoS One 9:e112265[PubMed]submitted materials
100Castro L, Aguiar P (2014) A feedforward model for the formation of a grid field where spatial information is provided solely from place cells. Biol Cybern 108:133-43[PubMed]submitted materials
101Cavallari S, Panzeri S, Mazzoni A (2014) Comparison of the dynamics of neural interactions between current-based and conductance-based integrate-and-fire recurrent networks Frontiers in Neural Circuits 8:12submitted materials
102Cavarretta F, Carnevale NT, Tegolo D, Migliore M (2014) Effects of low frequency electric fields on synaptic integration in hippocampal CA1 pyramidal neurons: implications for power line emissions Front. Cell. Neurosci. 8:310both
103Chadderdon GL, Mohan A, Suter BA, Neymotin SA, Kerr CC, Francis JT, Shepherd GM, Lytton WW (2014) Motor cortex microcircuit simulation based on brain activity mapping. Neural Comput 26:1239-62[PubMed]submitted materials
104Chen M, Guo D, Wang T, Jing W, Xia Y, Xu P, Luo C, Valdes-Sosa PA, Yao D (2014) Bidirectional control of absence seizures by the Basal Ganglia: a computational evidence PLoS Computational Biology 10(3):e1003495[PubMed]submitted materials
105Chen W, De Schutter E (2014) Python-based geometry preparation and simulation visualization toolkits for STEPS Front. Neuroinform. 8:37submitted materials
106Clopath C, Badura A, De Zeeuw CI, Brunel N (2014) A cerebellar learning model of vestibulo-ocular reflex adaptation in wild-type and mutant mice. J Neurosci 34:7203-15[PubMed]submitted materials
107Cohen MX (2014) Fluctuations in oscillation frequency control spike timing and coordinate neural networks Journal of Neuroscience 34(27):8988-8998both
108Damodaran S, Evans RC, Blackwell KT (2014) Synchronized firing of fast-spiking interneurons is critical to maintain balanced firing between direct and indirect pathway neurons of the striatum. J Neurophysiol 111:836-48[PubMed]submitted materials
109De Schutter E (2014) The dangers of plug-and-play simulation using shared models. Neuroinformatics 12:227-8[PubMed]mentions
110Devore S, de Almeida L, Linster C (2014) Distinct roles of bulbar muscarinic and nicotinic receptors in olfactory discrimination learning. J Neurosci 34:11244-60[PubMed]submitted materials
111Eguchi A, Neymotin SA and Stringer SM (2014) Color opponent receptive fields self-organize in a biophysical model of visual cortex via spike-timing dependent plasticity 8:16. doi: Front. Neural Circuits 8:16submitted materials
112Esposito U, Giugliano M, van Rossum M, Vasilaki E (2014) Measuring symmetry, asymmetry and randomness in neural network connectivity. PLoS One 9:e100805[PubMed]submitted materials
113Eyal G, Mansvelder, HD, de Kock CPJ, Segev I (2014) Dendrites impact the encoding capabilities of the axon J Neurosci 34(24):8063-8071obtained materials
114Goldwyn JH, McLaughlin M, Verschooten E, Joris PX, Rinzel J (2014) A model of the medial superior olive explains spatiotemporal features of local field potentials J Neurosci. 34(35):11705-22[PubMed]submitted materials
115Graham BP, Saudargiene A, Cobb S (2014) Spine head calcium as a measure of summed postsynaptic activity for driving synaptic plasticity Neural Comput 26:2194-2222[PubMed]both
116Grein S, Stepniewski M, Reiter S, Knodel MM, Queisser G (2014) 1D-3D hybrid modeling-from multi-compartment models to full resolution models in space and time. Front Neuroinform 8:68[PubMed]obtained materials
117Hjorth JJ, van Pelt J, Mansvelder HD, van Ooyen A (2014) Competitive Dynamics during Resource-Driven Neurite Outgrowth. PLoS One 9:e86741[PubMed]submitted materials
118Hubel N, Dahlem MA (2014) Dynamics from seconds to hours in Hodgkin-Huxley model with time-dependent ion concentrations and buffer reservoirs PLoS Comp Biol 10:e1003941[PubMed]submitted materials
119Hummos A, Franklin CC, Nair SS (2014) Intrinsic mechanisms stabilize encoding and retrieval circuits differentially in a hippocampal network model. Hippocampus 24:1430-1448[PubMed]submitted materials
120Konstantoudaki X, Papoutsi A, Chalkiadaki K, Poirazi P, Sidiropoulou K (2014) Modulatory effects of inhibition on persistent activity in a cortical microcircuit model. Front Neural Circuits 8:7[PubMed]submitted materials
121Kozlov AK, Kardamakis AA, Kotaleski JH, Grillner S (2014) Gating of steering signals through phasic modulation of reticulospinal neurons during locomotion PNAS 111(9):3591-3596[PubMed]submitted materials
122Le Masson G, Przedborski S, Abbott LF (2014) A computational model of motor neuron degeneration. Neuron 83:975-88[PubMed]submitted materials
123Lee SH, Marchionni I, Bezaire M, Varga C, Danielson N, Lovett-Barron M, Losonczy A, Soltesz I (2014) Parvalbumin-Positive Basket Cells Differentiate among Hippocampal Pyramidal Cells Neuron 82(5):1129-44[PubMed]submitted materials
124Liénard J, Girard B (2014) A biologically constrained model of the whole basal ganglia addressing the paradoxes of connections and selection. J Comput Neurosci 36:445-68[PubMed]submitted materials
125Makadia H, Anderson W, Fey D, Sauter T, Schwaber JS, Vadigepalli R (2015) Multiscale model of dynamic neuromodulation integrating neuropeptide induced signaling pathway activity with membrane electrophysiology Biophys J. 108(1):211-223[PubMed]submitted materials
126Migliore M, Cavarretta F, Hines ML, Shepherd GM (2014) Distributed organization of a brain microcircuit analysed by three-dimensional modeling: the olfactory bulb Front. Comput. Neurosci. 8:50both
127Morita K (2014) Differential cortical activation of the striatal direct and indirect-pathway cells: reconciling the anatomical and optogenetic results by a computational method. J Neurophysiol[PubMed]obtained materials
128Morita K, Kato A (2014) Striatal dopamine ramping may indicate flexible reinforcement learning with forgetting in the cortico-basal ganglia circuits Front. Neural Circuits 8:36submitted materials
129Nieus TR, Mapelli L, D Regulation of output spike patterns by phasic inhibition in cerebellar granule cells. Front Cell Neurosci 8:246[PubMed]obtained materials
130Papoutsi A, Sidiropoulou K, Poirazi P (2014) Dendritic nonlinearities reduce network size requirements and mediate ON and OFF states of persistent activity in a PFC microcircuit model PLoS Computational Biology 10(7):e1003764[PubMed]submitted materials
131Pezo D, Soudry D, Orio P (2014) Diffusion approximation-based simulation of stochastic ion channels: which method to use? Front Comp Neurosci 8:139[PubMed]both
132Reetz O, Stadler K, Strauss U (2014) Protein kinase C activation mediates interferon-β-induced neuronal excitability changes in neocortical pyramidal neurons Journal of Neuroinflammation 11(1):185[PubMed]submitted materials
133Rossert C, Solinas S, D`Angelo, Dean P, Porrill J (2014) Model cerebellar granule cells can faithfully transmit modulated firing rate signals Front. Cell. Neurosci. 8:304submitted materials
134Rowan MS, Neymotin SA, Lytton WW (2014) Electrostimulation to reduce synaptic scaling driven progression of Alzheimer's disease. Front Comput Neurosci 8:39[PubMed]submitted materials
135Schneider CJ, Cuntz H, Soltesz I (2014) Linking Macroscopic with Microscopic Neuroanatomy Using Synthetic Neuronal Populations. PLoS Comput Biol 10:e1003921[PubMed]submitted materials
136Simoes_De_Souza FM, Antunes G, Roque AC (2014) Electrical responses of three classes of Granule Neurons of the Olfactory Bulb to synaptic Inputs in Different Dendritic Locations Front. Comput. Neurosci. 8:128submitted materials
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