Turtle visual cortex model (Nenadic et al. 2003, Wang et al. 2005, Wang et al. 2006)

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Accession:94845
This is a model of the visual cortex of freshwater turtles that is based upon the known anatomy and physiology of individual neurons. The model was published in three papers (Nenadic et al., 2003; Wang et al., 2005; Wang et al., 2006), which should be consulted for full details on its construction. The model has also been used in several papers (Robbins and Senseman, 2004; Du et al., 2005; Du et al., 2006). It is implemented in GENESIS (Bower and Beeman, 1998).
References:
1 . Nenadic Z, Ghosh BJ, Ulinski P (2003) Propagating Waves in Visual Cortex: A Large-Scale Model of Turtle Visual Cortex Journal of Computational Neuroscience 14:161-184 [PubMed]
2 . Nenadic Z, Ghosh BK, Ulinski PS (2002) Modeling and estimation problems in the turtle visual cortex. IEEE Trans Biomed Eng 49:753-62 [PubMed]
3 . Robbins KA, Senseman DM (2004) Extracting wave structure from biological data with application to responses in turtle visual cortex. J Comput Neurosci 16:267-98 [PubMed]
4 . Wang W, Campaigne C, Ghosh BK, Ulinski PS (2005) Two cortical circuits control propagating waves in visual cortex. J Comput Neurosci 19:263-89 [PubMed]
5 . Wang W (2006) Dynamics of the turtle visual cortex and design of sensor networks D.Sc. Thesis
6 . Wang W, Luo S, Ghosh BK, Ulinski PS (2006) Generation of the receptive fields of subpial cells in turtle visual cortex. J Integr Neurosci 5:561-93 [PubMed]
7 . Du X, Ghosh BK, Ulinski P (2006) Encoding of motion targets by waves in turtle visual cortex. IEEE Trans Biomed Eng 53:1688-95 [PubMed]
8 . Du X, Ghosh BK, Ulinski P (2005) Encoding and decoding target locations with waves in the turtle visual cortex. IEEE Trans Biomed Eng 52:566-77 [PubMed]
Model Information (Click on a link to find other models with that property)
Model Type: Realistic Network;
Brain Region(s)/Organism: Turtle cortex;
Cell Type(s): Turtle dorsal cortex lateral pyramidal cell; Turtle dorsal cortex medial pyramidal cell; Turtle dorsal cortex subpial cell; Turtle dorsal cortex stellate cell; Turtle dorsal cortex horizontal cell;
Channel(s): I Na,t; I L high threshold; I K; I K,Ca;
Gap Junctions:
Receptor(s): GabaA; GabaB; AMPA; NMDA;
Gene(s):
Transmitter(s):
Simulation Environment: GENESIS;
Model Concept(s): Spatio-temporal Activity Patterns; Vision;
Implementer(s): Robbins, Kay [krobbins at cs.utsa.edu];
Search NeuronDB for information about:  GabaA; GabaB; AMPA; NMDA; I Na,t; I L high threshold; I K; I K,Ca;
 
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TurtleVisCortex
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README.html
README
TurtleVisCortex-descrip.pdf
                            
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