Neurite: electrophysiological-mechanical coupling simulation framework (Garcia-Grajales et al 2015)

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Accession:168861
Neurite simulates the electrical signal propagation in myelinated and unmyelinated axons, and in dendritic trees under mechanical loading. Two different solvers are available (explicit and implicit) with sequential (CPU) and parallel (GPUs) versions
Reference:
1 . García-Grajales JA, Rucabado G, García-Dopico A, Peña JM, Jérusalem A (2015) Neurite, a finite difference large scale parallel program for the simulation of electrical signal propagation in neurites under mechanical loading. PLoS One 10:e0116532 [PubMed]
Model Information (Click on a link to find other models with that property)
Model Type: Axon; Dendrite;
Brain Region(s)/Organism:
Cell Type(s): Myelinated neuron;
Channel(s): I Sodium; I Potassium;
Gap Junctions:
Receptor(s):
Gene(s):
Transmitter(s):
Simulation Environment: C or C++ program;
Model Concept(s): Action Potential Initiation; Axonal Action Potentials; Action Potentials;
Implementer(s): Garcia-Grajales, Julian Andres ;
Search NeuronDB for information about:  I Sodium; I Potassium;
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Authors:        Julián Andrés García Grajales
                      Jose María Peña
                      Antoine Jérusalem

This work has been done at IMDEA Materials, the Technical University of Madrid and the University of Oxford.

This is the public version of the Neurite program.

The authors acknowledge Samuel R. Buss as the author of the RbgImage files used by Neurite. For further information, please go to the header of those files.

The MIT License (MIT)

Copyright (c) 2016, IMDEA Materials, Technical University of Madrid and University of Oxford

Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:
The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.

THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.

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