A contracting model of the basal ganglia (Girard et al. 2008)

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Accession:124111
Basal ganglia model : selection processes between channels, dynamics controlled by contraction analysis, rate-coding model of neurons based on locally projected dynamical systems (lPDS).
References:
1 . Gurney K, Prescott TJ, Redgrave P (2001) A computational model of action selection in the basal ganglia. II. Analysis and simulation of behaviour. Biol Cybern 84:411-23 [PubMed]
2 . Prescott TJ, Montes González FM, Gurney K, Humphries MD, Redgrave P (2006) A robot model of the basal ganglia: behavior and intrinsic processing. Neural Netw 19:31-61 [PubMed]
3 . Girard B, Tabareau N, Pham QC, Berthoz A, Slotine JJ (2008) Where neuroscience and dynamic system theory meet autonomous robotics: a contracting basal ganglia model for action selection. Neural Netw 21:628-41 [PubMed]
Model Information (Click on a link to find other models with that property)
Model Type: Realistic Network;
Brain Region(s)/Organism: Thalamus; Basal ganglia;
Cell Type(s): Neostriatum medium spiny direct pathway GABA cell; Thalamus geniculate nucleus/lateral principal GLU cell; Thalamus reticular nucleus GABA cell; Subthalamus nucleus projection neuron; Globus pallidus neuron; Neostriatum fast spiking interneuron;
Channel(s):
Gap Junctions:
Receptor(s): D1; D2;
Gene(s):
Transmitter(s): Dopamine;
Simulation Environment: Python;
Model Concept(s): Action Selection/Decision Making;
Implementer(s): Girard, Benoit [girard at isir.upmc.fr];
Search NeuronDB for information about:  Neostriatum medium spiny direct pathway GABA cell; Thalamus geniculate nucleus/lateral principal GLU cell; Thalamus reticular nucleus GABA cell; D1; D2; Dopamine;
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CBG_distributable
log
BG_CBG
BG_GPR
e1_CBG
e1_GPR
e2_CBG
e2_GPR
ThFC_CBG
ThFC_GPR
                            
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.330298910253 0.839278145319 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.337151757412 0.846725839793 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.341438200363 0.851533071416 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.347029520793 0.856629196815 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.251604496338 0.808762641704 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.148968633586 0.705179377756 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0465263812751 0.602087483998 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.474947834464 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0271200282568 0.805170310235 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.197949821205 0.97628596967 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.368853988024 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.539855242567 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.186411378034 0.711143688499 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0571900137487 0.507876795759 0.849961421783 1.0 1.0 1.0 1.0 1.0 1.0 1.0
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.377963654966 0.789968574005 0.994131123567 1.0 1.0 1.0 1.0 1.0 1.0
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.247837302918 0.700567263337 0.931559539666 1.0 1.0 1.0 1.0 1.0 1.0
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.117665568411 0.56859381193 0.86988795466 1.0 1.0 1.0 1.0 1.0 1.0
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.438434923336 0.808202152342 1.0 1.0 1.0 1.0 1.0 1.0
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.308259307821 0.746511509432 0.949868067415 1.0 1.0 1.0 1.0 1.0
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.178083855704 0.629562020889 0.888170342905 1.0 1.0 1.0 1.0 1.0
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0479084795332 0.498843186841 0.82647484237 1.0 1.0 1.0 1.0 1.0

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