Generic Bi-directional Real-time Neural Interface (Zrenner et al. 2010)

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Accession:128068
Matlab/Simulink toolkit for generic multi-channel short-latency bi-directional neural-computer interactions. High-bandwidth (> 10 megabit per second) neural recording data can be analyzed in real-time while simultaneously generating specific complex electrical stimulation feedback with deterministically timed responses at sub-millisecond resolution. The commercially available 60-channel extracellular multi-electrode recording and stimulation set-up (Multichannelsystems GmbH MEA60) is used as an example hardware implementation.
Reference:
1 . Zrenner CD, Eytan D, Wallach A, Thier HP, Marom S (2010) A generic framework for real-time multi-channel neuronal signal analysis, telemetry control and sub-millisecond latency feedback generation Frontiers in Neuroprosthetics
Model Information (Click on a link to find other models with that property)
Model Type: Neuron or other electrically excitable cell;
Brain Region(s)/Organism:
Cell Type(s): Neocortex dissociated cultured nerve cell;
Channel(s):
Gap Junctions:
Receptor(s):
Gene(s):
Transmitter(s):
Simulation Environment: C or C++ program; MATLAB; Simulink;
Model Concept(s): Methods;
Implementer(s): Zrenner, Christoph [christoph.zrenner at gmail.com];
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		  OutDataTypeMode	  "uint8"
		  OutDataType		  "sfix(16)"
		  ConRadixGroup		  "Use specified scaling"
		  OutScaling		  "2^0"
		  SampleTime		  "inf"
		  FramePeriod		  "inf"
		}
		Block {
		  BlockType		  Constant
		  Name			  "Hq7"
		  Position		  [48, 25, 82, 45]
		  Orientation		  "up"
		  Value			  "0"
		  VectorParams1D	  on
		  SamplingMode		  "Sample based"
		  OutDataTypeMode	  "uint8"
		  OutDataType		  "sfix(16)"
		  ConRadixGroup		  "Use specified scaling"
		  OutScaling		  "2^0"
		  SampleTime		  "inf"
		  FramePeriod		  "inf"
		}
		Block {
		  BlockType		  Constant
		  Name			  "Lq0"
		  Position		  [28, 390, 62, 410]
		  Orientation		  "down"
		  Value			  "0"
		  VectorParams1D	  on
		  SamplingMode		  "Sample based"
		  OutDataTypeMode	  "uint8"
		  OutDataType		  "sfix(16)"
		  ConRadixGroup		  "Use specified scaling"
		  OutScaling		  "2^0"
		  SampleTime		  "inf"
		  FramePeriod		  "inf"
		}
		Block {
		  BlockType		  Constant
		  Name			  "Lq1"
		  Position		  [83, 375, 117, 395]
		  Orientation		  "down"
		  Value			  "0"
		  VectorParams1D	  on
		  SamplingMode		  "Sample based"
		  OutDataTypeMode	  "uint8"
		  OutDataType		  "sfix(16)"
		  ConRadixGroup		  "Use specified scaling"
		  OutScaling		  "2^0"
		  SampleTime		  "inf"
		  FramePeriod		  "inf"
		}
		Block {
		  BlockType		  Logic
		  Name			  "Lq2"
		  Ports			  [2, 1]
		  Position		  [141, 360, 174, 380]
		  Orientation		  "down"
		  Operator		  "OR"
		  AllPortsSameDT	  off
		  OutDataTypeMode	  "Specify via dialog"
		}
		Block {
		  BlockType		  Logic
		  Name			  "Lq3"
		  Ports			  [2, 1]
		  Position		  [201, 345, 234, 365]
		  Orientation		  "down"
		  Operator		  "OR"
		  AllPortsSameDT	  off
		  OutDataTypeMode	  "Specify via dialog"
		}
		Block {
		  BlockType		  Mux
		  Name			  "Mux"
		  Ports			  [4, 1]
		  Position		  [480, 364, 485, 421]
		  ShowName		  off
		  DisplayOption		  "bar"
		}
		Block {
		  BlockType		  Mux
		  Name			  "Mux1"
		  Ports			  [4, 1]
		  Position		  [480, 274, 485, 331]
		  ShowName		  off
		  DisplayOption		  "bar"
		}
		Block {
		  BlockType		  Mux
		  Name			  "Mux4"
		  Ports			  [4, 1]
		  Position		  [480, 104, 485, 161]
		  ShowName		  off
		  DisplayOption		  "bar"
		}
		Block {
		  BlockType		  Mux
		  Name			  "Mux5"
		  Ports			  [4, 1]
		  Position		  [480, 14, 485, 71]
		  ShowName		  off
		  DisplayOption		  "bar"
		}
		Block {
		  BlockType		  Reference
		  Name			  "encode 11DATA_H"
		  Ports			  [1, 1]
		  Position		  [515, 26, 585, 64]
		  SourceBlock		  "meaworklibrary/Nibble Encoder"
		  SourceType		  ""
		  ShowPortLabels	  on
		  SystemSampleTime	  "-1"
		  FunctionWithSeparateData off
		  RTWMemSecFuncInitTerm	  "Inherit from model"
		  RTWMemSecFuncExecute	  "Inherit from model"
		  RTWMemSecDataConstants  "Inherit from model"
		  RTWMemSecDataInternal	  "Inherit from model"
		  RTWMemSecDataParameters "Inherit from model"
		}
		Block {
		  BlockType		  Reference
		  Name			  "encode 12DATA_H"
		  Ports			  [1, 1]
		  Position		  [515, 116, 585, 154]
		  SourceBlock		  "meaworklibrary/Nibble Encoder"
		  SourceType		  ""
		  ShowPortLabels	  on
		  SystemSampleTime	  "-1"
		  FunctionWithSeparateData off
		  RTWMemSecFuncInitTerm	  "Inherit from model"
		  RTWMemSecFuncExecute	  "Inherit from model"
		  RTWMemSecDataConstants  "Inherit from model"
		  RTWMemSecDataInternal	  "Inherit from model"
		  RTWMemSecDataParameters "Inherit from model"
		}
		Block {
		  BlockType		  Reference
		  Name			  "encode 13DATA_L"
		  Ports			  [1, 1]
		  Position		  [515, 286, 585, 324]
		  SourceBlock		  "meaworklibrary/Nibble Encoder"
		  SourceType		  ""
		  ShowPortLabels	  on
		  SystemSampleTime	  "-1"
		  FunctionWithSeparateData off
		  RTWMemSecFuncInitTerm	  "Inherit from model"
		  RTWMemSecFuncExecute	  "Inherit from model"
		  RTWMemSecDataConstants  "Inherit from model"
		  RTWMemSecDataInternal	  "Inherit from model"
		  RTWMemSecDataParameters "Inherit from model"
		}
		Block {
		  BlockType		  Reference
		  Name			  "encode 14DATA_L"
		  Ports			  [1, 1]
		  Position		  [515, 376, 585, 414]
		  SourceBlock		  "meaworklibrary/Nibble Encoder"
		  SourceType		  ""
		  ShowPortLabels	  on
		  SystemSampleTime	  "-1"
		  FunctionWithSeparateData off
		  RTWMemSecFuncInitTerm	  "Inherit from model"
		  RTWMemSecFuncExecute	  "Inherit from model"
		  RTWMemSecDataConstants  "Inherit from model"
		  RTWMemSecDataInternal	  "Inherit from model"
		  RTWMemSecDataParameters "Inherit from model"
		}
		Block {
		  BlockType		  Outport
		  Name			  "11DATA_H"
		  Position		  [610, 38, 640, 52]
		  IconDisplay		  "Port number"
		  BusOutputAsStruct	  off
		  DataType		  "uint8"
		}
		Block {
		  BlockType		  Outport
		  Name			  "12DATA_H"
		  Position		  [610, 128, 640, 142]
		  Port			  "2"
		  IconDisplay		  "Port number"
		  BusOutputAsStruct	  off
		  DataType		  "uint8"
		}
		Block {
		  BlockType		  Outport
		  Name			  "13DATA_L"
		  Position		  [610, 298, 640, 312]
		  Port			  "3"
		  IconDisplay		  "Port number"
		  BusOutputAsStruct	  off
		  DataType		  "uint8"
		}
		Block {
		  BlockType		  Outport
		  Name			  "14DATA_L"
		  Position		  [610, 388, 640, 402]
		  Port			  "4"
		  IconDisplay		  "Port number"
		  BusOutputAsStruct	  off
		  DataType		  "uint8"
		}
		Line {
		  SrcBlock		  "B"
		  SrcPort		  1
		  DstBlock		  "Demux"
		  DstPort		  1
		}
		Line {
		  SrcBlock		  "A"
		  SrcPort		  1
		  DstBlock		  "Demux1"
		  DstPort		  1
		}
		Line {
		  SrcBlock		  "Mux4"
		  SrcPort		  1
		  DstBlock		  "encode 12DATA_H"
		  DstPort		  1
		}
		Line {
		  SrcBlock		  "encode 12DATA_H"
		  SrcPort		  1
		  DstBlock		  "12DATA_H"
		  DstPort		  1
		}
		Line {
		  SrcBlock		  "Mux1"
		  SrcPort		  1
		  DstBlock		  "encode 13DATA_L"
		  DstPort		  1
		}
		Line {
		  SrcBlock		  "encode 13DATA_L"
		  SrcPort		  1
		  DstBlock		  "13DATA_L"
		  DstPort		  1
		}
		Line {
		  SrcBlock		  "Demux1"
		  SrcPort		  1
		  Points		  [40, 0]
		  Branch {
		    Points		    [150, 0; 0, 25]
		    DstBlock		    "Mux4"
		    DstPort		    3
		  }
		  Branch {
		    DstBlock		    "Hq5"
		    DstPort		    1
		  }
		}
		Line {
		  SrcBlock		  "Demux"
		  SrcPort		  1
		  Points		  [55, 0]
		  Branch {
		    Points		    [190, 0; 0, -150]
		    DstBlock		    "Mux4"
		    DstPort		    2
		  }
		  Branch {
		    DstBlock		    "Hq5"
		    DstPort		    2
		  }
		}
		Line {
		  SrcBlock		  "Demux1"
		  SrcPort		  2
		  Points		  [100, 0]
		  Branch {
		    Points		    [80, 0; 0, 25]
		    DstBlock		    "Mux4"
		    DstPort		    4
		  }
		  Branch {
		    DstBlock		    "Hq4"
		    DstPort		    1
		  }
		}
		Line {
		  SrcBlock		  "Demux"
		  SrcPort		  2
		  Points		  [115, 0]
		  Branch {
		    Points		    [115, 0; 0, -180]
		    DstBlock		    "Mux4"
		    DstPort		    1
		  }
		  Branch {
		    DstBlock		    "Hq4"
		    DstPort		    2
		  }
		}
		Line {
		  SrcBlock		  "Demux1"
		  SrcPort		  3
		  Points		  [75, 0]
		  Branch {
		    Points		    [90, 0; 0, 165]
		    DstBlock		    "Mux1"
		    DstPort		    3
		  }
		  Branch {
		    DstBlock		    "Lq3"
		    DstPort		    1
		  }
		}
		Line {
		  SrcBlock		  "Demux"
		  SrcPort		  3
		  Points		  [90, 0]
		  Branch {
		    Points		    [180, 0; 0, -10]
		    DstBlock		    "Mux1"
		    DstPort		    2
		  }
		  Branch {
		    DstBlock		    "Lq3"
		    DstPort		    2
		  }
		}
		Line {
		  SrcBlock		  "Demux1"
		  SrcPort		  4
		  Points		  [15, 0]
		  Branch {
		    Points		    [135, 0; 0, 165]
		    DstBlock		    "Mux1"
		    DstPort		    4
		  }
		  Branch {
		    DstBlock		    "Lq2"
		    DstPort		    1
		  }
		}
		Line {
		  SrcBlock		  "Demux"
		  SrcPort		  4
		  Points		  [30, 0]
		  Branch {
		    Points		    [230, 0; 0, -40]
		    DstBlock		    "Mux1"
		    DstPort		    1
		  }
		  Branch {
		    DstBlock		    "Lq2"
		    DstPort		    2
		  }
		}
		Line {
		  SrcBlock		  "Mux5"
		  SrcPort		  1
		  DstBlock		  "encode 11DATA_H"
		  DstPort		  1
		}
		Line {
		  SrcBlock		  "encode 11DATA_H"
		  SrcPort		  1
		  DstBlock		  "11DATA_H"
		  DstPort		  1
		}
		Line {
		  SrcBlock		  "Hq5"
		  SrcPort		  1
		  DstBlock		  "Mux5"
		  DstPort		  3
		}
		Line {
		  SrcBlock		  "Hq4"
		  SrcPort		  1
		  DstBlock		  "Mux5"
		  DstPort		  4
		}
		Line {
		  SrcBlock		  "Hq6"
		  SrcPort		  1
		  DstBlock		  "Mux5"
		  DstPort		  2
		}
		Line {
		  SrcBlock		  "Hq7"
		  SrcPort		  1
		  DstBlock		  "Mux5"
		  DstPort		  1
		}
		Line {
		  SrcBlock		  "Mux"
		  SrcPort		  1
		  DstBlock		  "encode 14DATA_L"
		  DstPort		  1
		}
		Line {
		  SrcBlock		  "encode 14DATA_L"
		  SrcPort		  1
		  DstBlock		  "14DATA_L"
		  DstPort		  1
		}
		Line {
		  SrcBlock		  "Lq3"
		  SrcPort		  1
		  DstBlock		  "Mux"
		  DstPort		  1
		}
		Line {
		  SrcBlock		  "Lq2"
		  SrcPort		  1
		  DstBlock		  "Mux"
		  DstPort		  2
		}
		Line {
		  SrcBlock		  "Lq1"
		  SrcPort		  1
		  DstBlock		  "Mux"
		  DstPort		  3
		}
		Line {
		  SrcBlock		  "Lq0"
		  SrcPort		  1
		  DstBlock		  "Mux"
		  DstPort		  4
		}
	      }
	    }
	    Block {
	      BlockType		      SubSystem
	      Name		      "4 to 1"
	      Ports		      [2, 3]
	      Position		      [505, 1135, 645, 1215]
	      MinAlgLoopOccurrences   off
	      RTWSystemCode	      "Auto"
	      FunctionWithSeparateData off
	      MaskHideContents	      off
	      System {
		Name			"4 to 1"
		Location		[354, 167, 1189, 676]
		Open			off
		ModelBrowserVisibility	off
		ModelBrowserWidth	200
		ScreenColor		"white"
		PaperOrientation	"landscape"
		PaperPositionMode	"auto"
		PaperType		"A4"
		PaperUnits		"centimeters"
		TiledPaperMargins	"[0.500000, 0.500000, 0.500000, 0.5000"
"00]"
		TiledPageScale		1
		ShowPageBoundaries	off
		ZoomFactor		"100"
		Block {
		  BlockType		  Inport
		  Name			  "A"
		  Position		  [25, 133, 55, 147]
		  IconDisplay		  "Port number"
		  PortDimensions	  "4"
		}
		Block {
		  BlockType		  Inport
		  Name			  "B"
		  Position		  [25, 203, 55, 217]
		  Port			  "2"
		  IconDisplay		  "Port number"
		  PortDimensions	  "4"
		}
		Block {
		  BlockType		  Demux
		  Name			  "Demux"
		  Ports			  [1, 4]
		  Position		  [125, 179, 130, 236]
		  BackgroundColor	  "black"
		  ShowName		  off
		  DisplayOption		  "bar"
		}
		Block {
		  BlockType		  Demux
		  Name			  "Demux1"
		  Ports			  [1, 4]
		  Position		  [125, 109, 130, 166]
		  BackgroundColor	  "black"
		  ShowName		  off
		  DisplayOption		  "bar"
		}
		Block {
		  BlockType		  Logic
		  Name			  "Hq4"
		  Ports			  [2, 1]
		  Position		  [341, 70, 374, 90]
		  Orientation		  "up"
		  Operator		  "OR"
		  AllPortsSameDT	  off
		  OutDataTypeMode	  "Specify via dialog"
		}
		Block {
		  BlockType		  Logic
		  Name			  "Hq5"
		  Ports			  [2, 1]
		  Position		  [281, 55, 314, 75]
		  Orientation		  "up"
		  Operator		  "OR"
		  AllPortsSameDT	  off
		  OutDataTypeMode	  "Specify via dialog"
		}
		Block {
		  BlockType		  Logic
		  Name			  "Hq6"
		  Ports			  [2, 1]
		  Position		  [221, 40, 254, 60]
		  Orientation		  "up"
		  Operator		  "OR"
		  AllPortsSameDT	  off
		  OutDataTypeMode	  "Specify via dialog"
		}
		Block {
		  BlockType		  Logic
		  Name			  "Hq7"
		  Ports			  [2, 1]
		  Position		  [161, 25, 194, 45]
		  Orientation		  "up"
		  Operator		  "OR"
		  AllPortsSameDT	  off
		  OutDataTypeMode	  "Specify via dialog"
		}
		Block {
		  BlockType		  Mux
		  Name			  "Mux1"
		  Ports			  [4, 1]
		  Position		  [600, 184, 605, 241]
		  ShowName		  off
		  DisplayOption		  "bar"
		}
		Block {
		  BlockType		  Mux
		  Name			  "Mux4"
		  Ports			  [4, 1]
		  Position		  [600, 104, 605, 161]
		  ShowName		  off
		  DisplayOption		  "bar"
		}
		Block {
		  BlockType		  Mux
		  Name			  "Mux5"
		  Ports			  [4, 1]
		  Position		  [600, 14, 605, 71]
		  ShowName		  off
		  DisplayOption		  "bar"
		}
		Block {
		  BlockType		  Reference
		  Name			  "encode 23DATA_H"
		  Ports			  [1, 1]
		  Position		  [635, 26, 705, 64]
		  SourceBlock		  "meaworklibrary/Nibble Encoder"
		  SourceType		  ""
		  ShowPortLabels	  on
		  SystemSampleTime	  "-1"
		  FunctionWithSeparateData off
		  RTWMemSecFuncInitTerm	  "Inherit from model"
		  RTWMemSecFuncExecute	  "Inherit from model"
		  RTWMemSecDataConstants  "Inherit from model"
		  RTWMemSecDataInternal	  "Inherit from model"
		  RTWMemSecDataParameters "Inherit from model"
		}
		Block {
		  BlockType		  Reference
		  Name			  "encode 24DATA_H"
		  Ports			  [1, 1]
		  Position		  [635, 116, 705, 154]
		  SourceBlock		  "meaworklibrary/Nibble Encoder"
		  SourceType		  ""
		  ShowPortLabels	  on
		  SystemSampleTime	  "-1"
		  FunctionWithSeparateData off
		  RTWMemSecFuncInitTerm	  "Inherit from model"
		  RTWMemSecFuncExecute	  "Inherit from model"
		  RTWMemSecDataConstants  "Inherit from model"
		  RTWMemSecDataInternal	  "Inherit from model"
		  RTWMemSecDataParameters "Inherit from model"
		}
		Block {
		  BlockType		  Reference
		  Name			  "encode 24DATA_L"
		  Ports			  [1, 1]
		  Position		  [635, 196, 705, 234]
		  SourceBlock		  "meaworklibrary/Nibble Encoder"
		  SourceType		  ""
		  ShowPortLabels	  on
		  SystemSampleTime	  "-1"
		  FunctionWithSeparateData off
		  RTWMemSecFuncInitTerm	  "Inherit from model"
		  RTWMemSecFuncExecute	  "Inherit from model"
		  RTWMemSecDataConstants  "Inherit from model"
		  RTWMemSecDataInternal	  "Inherit from model"
		  RTWMemSecDataParameters "Inherit from model"
		}
		Block {
		  BlockType		  Outport
		  Name			  "23DATA_H"
		  Position		  [730, 38, 760, 52]
		  IconDisplay		  "Port number"
		  BusOutputAsStruct	  off
		  DataType		  "uint8"
		}
		Block {
		  BlockType		  Outport
		  Name			  "24DATA_H"
		  Position		  [730, 128, 760, 142]
		  Port			  "2"
		  IconDisplay		  "Port number"
		  BusOutputAsStruct	  off
		  DataType		  "uint8"
		}
		Block {
		  BlockType		  Outport
		  Name			  "24DATA_L"
		  Position		  [730, 208, 760, 222]
		  Port			  "3"
		  IconDisplay		  "Port number"
		  BusOutputAsStruct	  off
		  DataType		  "uint8"
		}
		Line {
		  SrcBlock		  "B"
		  SrcPort		  1
		  DstBlock		  "Demux"
		  DstPort		  1
		}
		Line {
		  SrcBlock		  "A"
		  SrcPort		  1
		  DstBlock		  "Demux1"
		  DstPort		  1
		}
		Line {
		  SrcBlock		  "Mux4"
		  SrcPort		  1
		  DstBlock		  "encode 24DATA_H"
		  DstPort		  1
		}
		Line {
		  SrcBlock		  "encode 24DATA_H"
		  SrcPort		  1
		  DstBlock		  "24DATA_H"
		  DstPort		  1
		}
		Line {
		  SrcBlock		  "Mux1"
		  SrcPort		  1
		  DstBlock		  "encode 24DATA_L"
		  DstPort		  1
		}
		Line {
		  SrcBlock		  "encode 24DATA_L"
		  SrcPort		  1
		  DstBlock		  "24DATA_L"
		  DstPort		  1
		}
		Line {
		  SrcBlock		  "Demux1"
		  SrcPort		  1
		  Points		  [170, 0]
		  Branch {
		    Points		    [140, 0; 0, 25]
		    DstBlock		    "Mux4"
		    DstPort		    3
		  }
		  Branch {
		    DstBlock		    "Hq5"
		    DstPort		    2
		  }
		}
		Line {
		  SrcBlock		  "Demux"
		  SrcPort		  1
		  Points		  [155, 0]
		  Branch {
		    Points		    [210, 0; 0, -60]
		    DstBlock		    "Mux4"
		    DstPort		    2
		  }
		  Branch {
		    DstBlock		    "Hq5"
		    DstPort		    1
		  }
		}
		Line {
		  SrcBlock		  "Demux1"
		  SrcPort		  2
		  Points		  [230, 0]
		  Branch {
		    Points		    [70, 0; 0, 25]
		    DstBlock		    "Mux4"
		    DstPort		    4
		  }
		  Branch {
		    DstBlock		    "Hq4"
		    DstPort		    2
		  }
		}
		Line {
		  SrcBlock		  "Demux"
		  SrcPort		  2
		  Points		  [215, 0]
		  Branch {
		    Points		    [135, 0; 0, -90]
		    DstBlock		    "Mux4"
		    DstPort		    1
		  }
		  Branch {
		    DstBlock		    "Hq4"
		    DstPort		    1
		  }
		}
		Line {
		  SrcBlock		  "Demux1"
		  SrcPort		  3
		  Points		  [50, 0]
		  Branch {
		    Points		    [235, 0; 0, 75]
		    DstBlock		    "Mux1"
		    DstPort		    3
		  }
		  Branch {
		    DstBlock		    "Hq7"
		    DstPort		    2
		  }
		}
		Line {
		  SrcBlock		  "Demux"
		  SrcPort		  3
		  Points		  [35, 0]
		  Branch {
		    Points		    [355, 0; 0, -10]
		    DstBlock		    "Mux1"
		    DstPort		    2
		  }
		  Branch {
		    DstBlock		    "Hq7"
		    DstPort		    1
		  }
		}
		Line {
		  SrcBlock		  "Demux1"
		  SrcPort		  4
		  Points		  [110, 0]
		  Branch {
		    Points		    [160, 0; 0, 75]
		    DstBlock		    "Mux1"
		    DstPort		    4
		  }
		  Branch {
		    DstBlock		    "Hq6"
		    DstPort		    2
		  }
		}
		Line {
		  SrcBlock		  "Demux"
		  SrcPort		  4
		  Points		  [95, 0]
		  Branch {
		    Points		    [285, 0; 0, -40]
		    DstBlock		    "Mux1"
		    DstPort		    1
		  }
		  Branch {
		    DstBlock		    "Hq6"
		    DstPort		    1
		  }
		}
		Line {
		  SrcBlock		  "Mux5"
		  SrcPort		  1
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	      RTWMemSecFuncInitTerm   "Inherit from model"
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		Block {
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		  RTWMemSecFuncInitTerm	  "Inherit from model"
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		  FunctionWithSeparateData off
		  RTWMemSecFuncInitTerm	  "Inherit from model"
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		  RTWMemSecDataParameters "Inherit from model"
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		Block {
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		  ShowPortLabels	  on
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		  FunctionWithSeparateData off
		  RTWMemSecFuncInitTerm	  "Inherit from model"
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		  RTWMemSecDataParameters "Inherit from model"
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		Block {
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		Block {
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		Block {
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		Line {
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		  Points		  [80, 0]
		  Branch {
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		Line {
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		  Points		  [95, 0]
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		Line {
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		  Points		  [25, 0]
		  Branch {
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		Line {
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		  Points		  [40, 0]
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		Line {
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		  Points		  [195, 0]
		  Branch {
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		Line {
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		  Points		  [210, 0]
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		Line {
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		  Points		  [135, 0]
		  Branch {
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		Line {
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		  Points		  [150, 0]
		  Branch {
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		Line {
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		Line {
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	    Block {
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	    Block {
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	    Block {
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	    Block {
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	      DstPort		      1
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	    Line {
	      SrcBlock		      "Demux1"
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	      Points		      [155, 0; 0, -430]
	      DstBlock		      "Mux11"
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	    Line {
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	      DstBlock		      "Mux14"
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	    Line {
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	    Line {
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	    Line {
	      SrcBlock		      "60 to 57"
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	    Line {
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	    Line {
	      SrcBlock		      "Demux"
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	    Line {
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	    Line {
	      SrcBlock		      "Demux"
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	      Points		      [140, 0; 0, 495]
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	    Line {
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	      Points		      [130, 0; 0, 480]
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	    Line {
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	    Line {
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	    Line {
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	Block {
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	Block {
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	  BlockType		  Reference
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	  BusOutputAsStruct	  off
	}
	Line {
	  SrcBlock		  "Select first\nElement B"
	  SrcPort		  1
	  DstBlock		  "Compare\nTo Zero A1"
	  DstPort		  1
	}
	Line {
	  SrcBlock		  "Select first\nElement A"
	  SrcPort		  1
	  DstBlock		  "Compare\nTo Zero A"
	  DstPort		  1
	}
	Line {
	  SrcBlock		  "Compare\nTo Zero A1"
	  SrcPort		  1
	  Points		  [140, 0; 0, -250]
	  DstBlock		  "Enable B"
	  DstPort		  2
	}
	Line {
	  SrcBlock		  "Enable B"
	  SrcPort		  1
	  DstBlock		  "Sync"
	  DstPort		  1
	}
	Line {
	  SrcBlock		  "Compare\nTo Zero A"
	  SrcPort		  1
	  Points		  [150, 0; 0, -230]
	  DstBlock		  "Enable A"
	  DstPort		  2
	}
	Line {
	  SrcBlock		  "Enable A"
	  SrcPort		  1
	  DstBlock		  "Stimulate A"
	  DstPort		  1
	}
	Line {
	  SrcBlock		  "Unit Delay B"
	  SrcPort		  1
	  DstBlock		  "Element selector\n B"
	  DstPort		  1
	}
	Line {
	  SrcBlock		  "Unit Delay A"
	  SrcPort		  1
	  DstBlock		  "Element selector A"
	  DstPort		  1
	}
	Line {
	  SrcBlock		  "Element selector\n B"
	  SrcPort		  1
	  Points		  [65, 0; 0, -190; -460, 0; 0, 105]
	  DstBlock		  "Stimulate A2"
	  DstPort		  1
	}
	Line {
	  SrcBlock		  "Data B"
	  SrcPort		  1
	  Points		  [265, 0]
	  Branch {
	    Points		    [0, 110]
	    DstBlock		    "Select first\nElement B"
	    DstPort		    1
	  }
	  Branch {
	    DstBlock		    "Element selector\n B"
	    DstPort		    2
	  }
	}
	Line {
	  SrcBlock		  "Event Counter B"
	  SrcPort		  1
	  DstBlock		  "Unit Delay B"
	  DstPort		  1
	}
	Line {
	  SrcBlock		  "Stimulate A2"
	  SrcPort		  1
	  Points		  [70, 0]
	  Branch {
	    Points		    [0, -55]
	    DstBlock		    "Enable B"
	    DstPort		    1
	  }
	  Branch {
	    Points		    [0, 50]
	    DstBlock		    "Event Counter B"
	    DstPort		    1
	  }
	}
	Line {
	  SrcBlock		  "Element selector A"
	  SrcPort		  1
	  Points		  [65, 0; 0, -190; -460, 0; 0, 105]
	  DstBlock		  "Stimulate A1"
	  DstPort		  1
	}
	Line {
	  SrcBlock		  "Stimulus Trigger Times"
	  SrcPort		  1
	  Points		  [215, 0]
	  Branch {
	    Points		    [0, 90]
	    DstBlock		    "Select first\nElement A"
	    DstPort		    1
	  }
	  Branch {
	    DstBlock		    "Element selector A"
	    DstPort		    2
	  }
	}
	Line {
	  SrcBlock		  "Event Counter A"
	  SrcPort		  1
	  DstBlock		  "Unit Delay A"
	  DstPort		  1
	}
	Line {
	  SrcBlock		  "Model Time Step"
	  SrcPort		  1
	  Points		  [70, 0]
	  Branch {
	    Points		    [0, 360]
	    DstBlock		    "Stimulate A2"
	    DstPort		    2
	  }
	  Branch {
	    DstBlock		    "Stimulate A1"
	    DstPort		    2
	  }
	}
	Line {
	  SrcBlock		  "Stimulate A1"
	  SrcPort		  1
	  Points		  [70, 0]
	  Branch {
	    Points		    [0, -55]
	    DstBlock		    "Enable A"
	    DstPort		    1
	  }
	  Branch {
	    Points		    [0, 50]
	    DstBlock		    "Event Counter A"
	    DstPort		    1
	  }
	}
      }
    }
    Block {
      BlockType		      Constant
      Name		      "Sync Times"
      Position		      [60, 42, 165, 68]
      BackgroundColor	      "lightBlue"
      Value		      "synctimes"
      VectorParams1D	      on
      SamplingMode	      "Sample based"
      OutDataTypeMode	      "uint32"
      OutDataType	      "sfix(16)"
      ConRadixGroup	      "Use specified scaling"
      OutScaling	      "2^0"
      SampleTime	      "-1"
      FramePeriod	      "inf"
    }
    Block {
      BlockType		      Constant
      Name		      "Time and Indexes of stimulus \ncombination and "
"intensity"
      Position		      [75, 162, 180, 188]
      BackgroundColor	      "lightBlue"
      NamePlacement	      "alternate"
      Value		      "switchtimes"
      VectorParams1D	      off
      SamplingMode	      "Sample based"
      OutDataTypeMode	      "uint32"
      OutDataType	      "sfix(16)"
      ConRadixGroup	      "Use specified scaling"
      OutScaling	      "2^0"
      SampleTime	      "-1"
      FramePeriod	      "inf"
    }
    Block {
      BlockType		      UnitDelay
      Name		      "Unit Delay1"
      Position		      [105, 403, 140, 437]
      Orientation	      "left"
      NamePlacement	      "alternate"
      SampleTime	      "-1"
    }
    Line {
      SrcBlock		      "DAQ Frame\n(8-sample)"
      SrcPort		      2
      DstBlock		      "Network Transmit "
      DstPort		      5
    }
    Line {
      SrcBlock		      "DAQ Frame\n(8-sample)"
      SrcPort		      3
      DstBlock		      "+-5V 12bit"
      DstPort		      1
    }
    Line {
      SrcBlock		      "+-5V 12bit"
      SrcPort		      1
      DstBlock		      "Saturate at 8bit"
      DstPort		      1
    }
    Line {
      SrcBlock		      "Mux"
      SrcPort		      1
      DstBlock		      "Statistical Information"
      DstPort		      1
    }
    Line {
      SrcBlock		      "Saturate at 8bit"
      SrcPort		      1
      DstBlock		      "Network Transmit "
      DstPort		      6
    }
    Line {
      SrcBlock		      "Sync Times"
      SrcPort		      1
      DstBlock		      "Stimulus Timer1"
      DstPort		      1
    }
    Line {
      SrcBlock		      "Serial Command Timer"
      SrcPort		      1
      Points		      [0, -5]
      DstBlock		      "Send Serial Command"
      DstPort		      1
    }
    Line {
      SrcBlock		      "Serial Command Timer"
      SrcPort		      2
      DstBlock		      "Send Serial Command"
      DstPort		      2
    }
    Line {
      SrcBlock		      "Serial Command Timer"
      SrcPort		      3
      Points		      [0, 5; 125, 0]
      Branch {
	DstBlock		"Send Serial Command"
	DstPort			3
      }
      Branch {
	Points			[0, 220]
	DstBlock		"Network Transmit "
	DstPort			3
      }
    }
    Line {
      SrcBlock		      "Stimulation electrodes Configurations"
      SrcPort		      1
      Points		      [25, 0]
      DstBlock		      "Serial Command Timer"
      DstPort		      2
    }
    Line {
      SrcBlock		      "Time and Indexes of stimulus \ncombination and "
"intensity"
      SrcPort		      1
      Points		      [25, 0]
      DstBlock		      "Serial Command Timer"
      DstPort		      1
    }
    Line {
      SrcBlock		      "DAQ Frame\n(8-sample)"
      SrcPort		      1
      DstBlock		      "Network Transmit "
      DstPort		      4
    }
    Line {
      SrcBlock		      "Network Transmit "
      SrcPort		      1
      DstBlock		      "Mux1"
      DstPort		      1
    }
    Line {
      SrcBlock		      "Network Transmit "
      SrcPort		      2
      DstBlock		      "Mux1"
      DstPort		      2
    }
    Line {
      SrcBlock		      "Network Transmit "
      SrcPort		      3
      DstBlock		      "Mux1"
      DstPort		      3
    }
    Line {
      SrcBlock		      "Network Transmit "
      SrcPort		      4
      DstBlock		      "Mux1"
      DstPort		      4
    }
    Line {
      SrcBlock		      "Network Transmit "
      SrcPort		      5
      DstBlock		      "Mux1"
      DstPort		      5
    }
    Line {
      Labels		      [1, 0]
      SrcBlock		      "Mux1"
      SrcPort		      1
      DstBlock		      "Mux"
      DstPort		      1
    }
    Line {
      SrcBlock		      "Unit Delay1"
      SrcPort		      1
      Points		      [-50, 0; 0, 170]
      DstBlock		      "DAQ Frame\n(8-sample)"
      DstPort		      1
    }
    Line {
      SrcBlock		      "Stimulus Intensitiy (mV) Configurations"
      SrcPort		      1
      Points		      [25, 0]
      DstBlock		      "Serial Command Timer"
      DstPort		      3
    }
    Line {
      SrcBlock		      "Serial Command Timer"
      SrcPort		      4
      Points		      [0, 10]
      DstBlock		      "Send Serial Command"
      DstPort		      4
    }
    Line {
      SrcBlock		      "DAQ Frame\n(8-sample)"
      SrcPort		      5
      Points		      [145, 0; 0, 50]
      DstBlock		      "Activity Monitor1"
      DstPort		      1
    }
    Line {
      SrcBlock		      "      "
      SrcPort		      1
      Points		      [35, 0]
      Branch {
	DstBlock		"Stimulator"
	DstPort			1
      }
      Branch {
	Points			[0, 275]
	Branch {
	  DstBlock		  "Network Transmit "
	  DstPort		  1
	}
	Branch {
	  Points		  [0, 80]
	  DstBlock		  "Unit Delay1"
	  DstPort		  1
	}
      }
    }
    Line {
      SrcBlock		      "Stimulus Timer1"
      SrcPort		      1
      DstBlock		      "      "
      DstPort		      1
    }
    Line {
      SrcBlock		      "Stimulus Timer1"
      SrcPort		      2
      Points		      [45, 0; 0, -15]
      DstBlock		      "      "
      DstPort		      3
    }
    Line {
      SrcBlock		      "Detect\nChange"
      SrcPort		      1
      DstBlock		      "Network Transmit "
      DstPort		      2
    }
    Line {
      SrcBlock		      "Model\nTimestep"
      SrcPort		      1
      DstBlock		      "Stimulus Timer1"
      DstPort		      2
    }
  }
}
MatData {
  NumRecords		  3
  DataRecord {
    Tag			    DataTag2
    Data		    "  %)30     .    ,     8    (    !          %    "
"\"                0         0          "
  }
  DataRecord {
    Tag			    DataTag1
    Data		    "  %)30     .    8     8    (     0         %    "
"\"     $    !     0         .    ,     8    (    !          %    \"     $    "
"$     0         0  0 4V]R= "
  }
  DataRecord {
    Tag			    DataTag0
    Data		    "  %)30     .    ,     8    (    !@         %    "
"\"                0         )          "
  }
}

# Finite State Machines
#
#    Stateflow Version 6.5 (R2006b) dated Aug  8 2006, 21:09:58
#
#

Stateflow {

	machine {
		id                   		1
		name                 		"meart_target_60"
		created              		"22-Feb-2007 12:36:39"
		isLibrary            		0
		firstTarget          		14
		sfVersion            		65014000
	}

	chart {
		id                                        		2
		name                                      		"Network Transmit /UDP Buffered Packet Send/Transmit Logic"
		windowPosition                            		[356.813 254.45 200.25 189.75]
		viewLimits                                		[0 156.75 0 153.75]
		screen                                    		[1 1 1280 1024 1.333333333333333]
		treeNode                                  		[0 3 0 0]
		firstTransition                           		5
		firstJunction                             		4
		viewObj                                   		2
		machine                                   		1
		decomposition                             		CLUSTER_CHART
		type                                      		EML_CHART
		firstData                                 		6
		chartFileNumber                           		2
		disableImplicitCasting                    		1
		eml {
			name       		"fcn"
		}
	}

	state {
		id                           		3
		labelString                  		"eML_blk_kernel()"
		position                     		[18 64.5 118 66]
		fontSize                     		12
		chart                        		2
		treeNode                     		[2 0 0 0]
		superState                   		SUBCHART
		subviewer                    		2
		type                         		FUNC_STATE
		decomposition                		CLUSTER_STATE
		eml {
			isEML                    		1
			script                   		"function [send_packet,send_sync,ack]  =  fcn(rcv_sync,rcv_v"
						"alid,packsize,dv)\n"
						"% Transmit Synchronization logic - State controller for the"
						" Target application \n"
						"%   that controls transmission of a contigyous stream of da"
						"ta from to the host.\n"
						"%\n"
						"%   Acknowledge\n"
						"%\n"
						"%SYC_RESEND -  This value defines how many cycles to wait f"
						"or an ACK before \n"
						"%  re-transmitting a packet.  The actual resend period is a"
						"n integer multiple \n"
						"%  of the sample period of this block. \n"
						"%  Recommendation - it should > 1 and less than the packet "
						"size.  \n"
						"%  If your packet size is 100, I'd recommend a value of aro"
						"und 20.  But the optimum value will\n"
						"%  depend on many factors, such as sample period, network l"
						"oading, \n"
						"%  network bandwidth, host loading, host latency etc.  \n"
						"%\n"
						"% States - \n"
						"%  WAIT_DV(0) - This is our initial state and means we're w"
						"aiting for our\n"
						"%    a packet to be ready for transmission.  In this state,"
						" we ignore all\n"
						"%    received stuff and simply wait for a complete packet t"
						"o be ready.  \n"
						"%\n"
						"%  WAIT_ACK(1) - Waiting for an acknowledgement.\n"
						"%\n"
						"persistent timer;\n"
						"persistent sync; \n"
						"persistent state;\n"
						"\n"
						"% How many time steps should we wait before re-transmitting"
						" a packet?  If this\n"
						"% value is too small, we can reduce overall channel bandwid"
						"th by sending unncessary\n"
						"% copies of the same data.  If it is too large, we risk ove"
						"rflowing the FIFO due\n"
						"% to a temporary network blockage.  \n"
						"% Empirically, this \n"
						"% Initialization\n"
						"syc_resend = double(packsize./2);\n"
						"\n"
						"if isempty(state),\n"
						"    state = 1;\n"
						"    sync = 1;  \n"
						"    timer = 0;\n"
						"end\n"
						"% Waiting for first packet to be ready to go!\n"
						"%  In this mode, we ignore all received data.  \n"
						"%  Don't bother with timer, (nothing to resend).  \n"
						"switch state,\n"
						"case 1,  % WAIT_DV\n"
						"    if dv,    % Still waiting!\n"
						"        timer = 0;\n"
						"        send_sync = uint32(sync);\n"
						"        send_packet = 1;\n"
						"        ack = logical(0);\n"
						"        state = 2;\n"
						"    else % Data is ready, send it and move to the next stat"
						"e...        \n"
						"        send_sync = uint32(0);\n"
						"        send_packet = 0;\n"
						"        ack = logical(0);        \n"
						"    end\n"
						"otherwise \n"
						"%case 2,  % WAIT_ACK\n"
						"    if (rcv_valid == 1) && (sync == rcv_sync), %Got an ack,"
						" and it's correct !!!  \n"
						"        % I can't send anything on this cycle, because I'm "
						"still holding\n"
						"        %  the previous value\n"
						"        sync = sync + 1;  % move to the next sync integer\n"
						"        send_sync = uint32(0);\n"
						"        send_packet = 0;\n"
						"        ack = logical(1);\n"
						"        state = 1;\n"
						"    else % Still waiting of a valid ack\n"
						"       timer = timer + 1;\n"
						"       if timer >= syc_resend,\n"
						"            send_sync = uint32(sync);  % resend the same sy"
						"nc/data...\n"
						"            send_packet = 1;\n"
						"            ack = logical(0);\n"
						"            timer = 0;\n"
						"       else \n"
						"            send_sync = uint32(0);\n"
						"            send_packet = 0;\n"
						"            ack = logical(0);\n"
						"       end\n"
						"    end\n"
						"end"
			editorLayout             		"100 M4x1[281 147 826 761]"
			treatIntsAsFixpt         		0
		}
	}

	junction {
		id         		4
		position   		[23.5747 49.5747 7]
		chart      		2
		linkNode   		[2 0 0]
		subviewer  		2
		type       		CONNECTIVE_JUNCTION
	}

	transition {
		id             		5
		labelString    		"{eML_blk_kernel();}"
		labelPosition  		[32.125 19.875 102.544 14.964]
		fontSize       		12
		src {
			intersection		[0 0 1 0 23.5747 14.625 0 0]
		}
		dst {
			id          		4
			intersection		[7 0 -1 -1 23.5747 42.5747 0 0]
		}
		midPoint       		[23.5747 24.9468]
		chart          		2
		linkNode       		[2 0 0]
		dataLimits     		[23.575 23.575 14.625 34.575]
		subviewer      		2
		drawStyle      		SMART
		executionOrder 		1
	}

	data {
		id                            		6
		name                          		"send_packet"
		linkNode                      		[2 0 7]
		scope                         		OUTPUT_DATA
		machine                       		1
		props {
			array {
				size      		"-1"
			}
			type {
				method    		SF_INHERITED_TYPE
			}
			complexity  		SF_COMPLEX_INHERITED
		}
		dataType                      		"inherited"
		fixptType {
			slope   		1
			baseType		SF_INT16_TYPE
		}
		complexity                    		SF_COMPLEX_INHERITED
	}

	data {
		id                            		7
		name                          		"rcv_sync"
		linkNode                      		[2 6 8]
		scope                         		INPUT_DATA
		machine                       		1
		props {
			array {
				size      		"-1"
			}
			type {
				primitive 		SF_UINT32_TYPE
			}
		}
		dataType                      		"uint32"
		fixptType {
			slope   		1
			baseType		SF_INT16_TYPE
		}
	}

	data {
		id                            		8
		name                          		"rcv_valid"
		linkNode                      		[2 7 9]
		scope                         		INPUT_DATA
		machine                       		1
		props {
			array {
				size      		"-1"
			}
			type {
				primitive 		SF_DOUBLE_TYPE
			}
			complexity  		SF_COMPLEX_INHERITED
		}
		dataType                      		"double"
		fixptType {
			slope   		1
			baseType		SF_INT16_TYPE
		}
		complexity                    		SF_COMPLEX_INHERITED
	}

	data {
		id                            		9
		name                          		"packsize"
		linkNode                      		[2 8 10]
		scope                         		INPUT_DATA
		machine                       		1
		props {
			array {
				size      		"-1"
			}
			type {
				method    		SF_INHERITED_TYPE
			}
			complexity  		SF_COMPLEX_INHERITED
		}
		dataType                      		"inherited"
		fixptType {
			slope   		1
			baseType		SF_INT16_TYPE
		}
		complexity                    		SF_COMPLEX_INHERITED
	}

	data {
		id                            		10
		name                          		"send_sync"
		linkNode                      		[2 9 11]
		scope                         		OUTPUT_DATA
		machine                       		1
		props {
			array {
				size      		"-1"
			}
			type {
				primitive 		SF_UINT32_TYPE
			}
			complexity  		SF_COMPLEX_INHERITED
		}
		dataType                      		"uint32"
		fixptType {
			slope   		1
			baseType		SF_INT16_TYPE
		}
		complexity                    		SF_COMPLEX_INHERITED
	}

	data {
		id                            		11
		name                          		"dv"
		linkNode                      		[2 10 12]
		scope                         		INPUT_DATA
		machine                       		1
		props {
			array {
				size      		"-1"
			}
			type {
				primitive 		SF_BOOLEAN_TYPE
			}
		}
		dataType                      		"boolean"
		fixptType {
			slope   		1
			baseType		SF_INT16_TYPE
		}
	}

	data {
		id                            		12
		name                          		"ack"
		linkNode                      		[2 11 0]
		scope                         		OUTPUT_DATA
		machine                       		1
		props {
			array {
				size      		"-1"
			}
			type {
				primitive 		SF_BOOLEAN_TYPE
			}
		}
		dataType                      		"boolean"
		fixptType {
			slope   		1
			baseType		SF_INT16_TYPE
		}
	}

	instance {
		id     		13
		name   		"Network Transmit /UDP Buffered Packet Send/Transmit Logic"
		machine		1
		chart  		2
	}

	target {
		id                        		14
		name                      		"sfun"
		description               		"Default Simulink S-Function Target."
		machine                   		1
		linkNode                  		[1 0 15]
	}

	target {
		id                        		15
		name                      		"rtw"
		codeFlags                 		" comments=1 statebitsets=1 databitsets=1 emitlogicalops=1 el"
						"seifdetection=1 constantfolding=1 redundantloadelimination=0"
						" preservenames=0 preservenameswithparent=0 exportcharts=0"
		machine                   		1
		linkNode                  		[1 14 0]
	}
}

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