Simulations using the Python interface to Neuron 7.2 (Development
Written by Brandon Aubie
How to Use
Install NEURON along with the Python interface. To make use of
multiple cores (or workstations), install the OpenMP toolset.
View run.py for instructions on running different simulations and
reproducing a subset of the figures in Aubie et al. (2012).
In general, once you have a simulation defined (the appropriate lines
uncommented in run.py), you can simply run:
and the simulations will run in multiple threads. If OpenMP is not
available on your system, you can simply run:
# python run.py
Output files are CSV files suitable for producing graphs with many
graphing programs such as GLE (http://glx.sourceforge.net/).
Aubie, B., Sayegh, R., & Faure, P. A. (2012). Duration Tuning across
Vertebrates. Journal of Neuroscience, 32(18), 6373-6390.
2022-12: Migrate to Python 3(via `2to3 -w .`)