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3D model of the olfactory bulb (Migliore et al. 2014)
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m187
glom37
Accession:
151681
This entry contains a link to a full HD version of movie 1 and the NEURON code of the paper: "Distributed organization of a brain microcircuit analysed by three-dimensional modeling: the olfactory bulb" by M Migliore, F Cavarretta, ML Hines, and GM Shepherd.
Reference:
1 .
Migliore M, Cavarretta F, Hines ML, Shepherd GM (2014) Distributed organization of a brain microcircuit analyzed by three-dimensional modeling: the olfactory bulb.
Front Comput Neurosci
8
:50
[
PubMed
]
Model Information
(Click on a link to find other models with that property)
Model Type:
Realistic Network;
Channel/Receptor;
Dendrite;
Brain Region(s)/Organism:
Olfactory bulb;
Cell Type(s):
Olfactory bulb main mitral GLU cell;
Olfactory bulb main interneuron granule MC GABA cell;
Channel(s):
I Na,t;
I A;
I K;
Gap Junctions:
Receptor(s):
NMDA;
Glutamate;
Gaba;
Gene(s):
Transmitter(s):
Simulation Environment:
NEURON;
Model Concept(s):
Pattern Recognition;
Activity Patterns;
Bursting;
Temporal Pattern Generation;
Oscillations;
Synchronization;
Active Dendrites;
Detailed Neuronal Models;
Synaptic Plasticity;
Action Potentials;
Synaptic Integration;
Unsupervised Learning;
Olfaction;
Implementer(s):
Hines, Michael [Michael.Hines at Yale.edu];
Migliore, Michele [Michele.Migliore at Yale.edu];
Cavarretta, Francesco [francescocavarretta at hotmail.it];
Search NeuronDB
for information about:
Olfactory bulb main mitral GLU cell
;
Olfactory bulb main interneuron granule MC GABA cell
;
NMDA
;
Glutamate
;
Gaba
;
I Na,t
;
I A
;
I K
;
Download the displayed file
/
bulb3d
readme.html
ampanmda.mod
*
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3D olfactory bulb: operators (Migliore et al, 2015)
distrt.mod
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3D olfactory bulb: operators (Migliore et al, 2015)
Parallel odor processing by mitral and middle tufted cells in the OB (Cavarretta et al 2016, 2018)
fi.mod
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Other models using fi.mod:
3D olfactory bulb: operators (Migliore et al, 2015)
kamt.mod
*
Other models using kamt.mod:
3D olfactory bulb: operators (Migliore et al, 2015)
Large scale model of the olfactory bulb (Yu et al., 2013)
Olfactory bulb cluster formation (Migliore et al. 2010)
kdrmt.mod
*
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3D olfactory bulb: operators (Migliore et al, 2015)
Large scale model of the olfactory bulb (Yu et al., 2013)
Olfactory bulb cluster formation (Migliore et al. 2010)
naxn.mod
*
Other models using naxn.mod:
3D olfactory bulb: operators (Migliore et al, 2015)
Large scale model of the olfactory bulb (Yu et al., 2013)
Olfactory bulb cluster formation (Migliore et al. 2010)
ThreshDetect.mod
*
Other models using ThreshDetect.mod:
3D olfactory bulb: operators (Migliore et al, 2015)
Large scale model of the olfactory bulb (Yu et al., 2013)
Mitral cell activity gating by respiration and inhibition in an olfactory bulb NN (Short et al 2016)
Olfactory bulb cluster formation (Migliore et al. 2010)
Parallel odor processing by mitral and middle tufted cells in the OB (Cavarretta et al 2016, 2018)
Synchrony by synapse location (McTavish et al. 2012)
all2all.py
*
Other models using all2all.py:
3D olfactory bulb: operators (Migliore et al, 2015)
Parallel odor processing by mitral and middle tufted cells in the OB (Cavarretta et al 2016, 2018)
balance.py
*
Other models using balance.py:
3D olfactory bulb: operators (Migliore et al, 2015)
Parallel odor processing by mitral and middle tufted cells in the OB (Cavarretta et al 2016, 2018)
bindict.py
BulbSurf.py
colors.py
*
Other models using colors.py:
3D olfactory bulb: operators (Migliore et al, 2015)
common.py
complexity.py
*
Other models using complexity.py:
3D olfactory bulb: operators (Migliore et al, 2015)
Parallel odor processing by mitral and middle tufted cells in the OB (Cavarretta et al 2016, 2018)
custom_params.py
*
Other models using custom_params.py:
3D olfactory bulb: operators (Migliore et al, 2015)
customsim.py
destroy_model.py
*
Other models using destroy_model.py:
3D olfactory bulb: operators (Migliore et al, 2015)
determine_connections.py
distribute.py
*
Other models using distribute.py:
3D olfactory bulb: operators (Migliore et al, 2015)
Parallel odor processing by mitral and middle tufted cells in the OB (Cavarretta et al 2016, 2018)
fig7.py
fixnseg.hoc
*
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3D olfactory bulb: operators (Migliore et al, 2015)
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Model of CA1 activity during working memory task (Spera et al. 2016)
Parallel odor processing by mitral and middle tufted cells in the OB (Cavarretta et al 2016, 2018)
getmitral.py
gidfunc.py
*
Other models using gidfunc.py:
3D olfactory bulb: operators (Migliore et al, 2015)
glom.py
granule.hoc
*
Other models using granule.hoc:
3D olfactory bulb: operators (Migliore et al, 2015)
Large scale model of the olfactory bulb (Yu et al., 2013)
granules.py
input-odors.txt
*
Other models using input-odors.txt:
3D olfactory bulb: operators (Migliore et al, 2015)
loadbalutil.py
*
Other models using loadbalutil.py:
3D olfactory bulb: operators (Migliore et al, 2015)
Parallel odor processing by mitral and middle tufted cells in the OB (Cavarretta et al 2016, 2018)
lpt.py
*
Other models using lpt.py:
3D olfactory bulb: operators (Migliore et al, 2015)
Parallel odor processing by mitral and middle tufted cells in the OB (Cavarretta et al 2016, 2018)
mayasyn.py
mgrs.py
misc.py
mitral.hoc
*
Other models using mitral.hoc:
3D olfactory bulb: operators (Migliore et al, 2015)
mitral_dend_density.py
mkmitral.py
modeldata.py
*
Other models using modeldata.py:
3D olfactory bulb: operators (Migliore et al, 2015)
multisplit_distrib.py
*
Other models using multisplit_distrib.py:
3D olfactory bulb: operators (Migliore et al, 2015)
net_mitral_centric.py
odordisp.py
*
Other models using odordisp.py:
3D olfactory bulb: operators (Migliore et al, 2015)
odors.py
*
Other models using odors.py:
3D olfactory bulb: operators (Migliore et al, 2015)
odorstim.py
params.py
parrun.py
realgloms.txt
*
Other models using realgloms.txt:
3D olfactory bulb: operators (Migliore et al, 2015)
runsim.py
split.py
*
Other models using split.py:
3D olfactory bulb: operators (Migliore et al, 2015)
util.py
*
Other models using util.py:
3D olfactory bulb: operators (Migliore et al, 2015)
Parallel odor processing by mitral and middle tufted cells in the OB (Cavarretta et al 2016, 2018)
weightsave.py
*
Other models using weightsave.py:
3D olfactory bulb: operators (Migliore et al, 2015)
import params def mgid2glom(gid): return int((gid-params.gid_mitral_begin)/params.Nmitral_per_glom)
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