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CA1 pyramidal neuron: as a 2-layer NN and subthreshold synaptic summation (Poirazi et al 2003)

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Accession:20212
We developed a CA1 pyramidal cell model calibrated with a broad spectrum of in vitro data. Using simultaneous dendritic and somatic recordings, and combining results for two different response measures (peak vs. mean EPSP), two different stimulus formats (single shock vs. 50 Hz trains), and two different spatial integration conditions (within vs. between-branch summation), we found the cell's subthreshold responses to paired inputs are best described as a sum of nonlinear subunit responses, where the subunits correspond to different dendritic branches. In addition to suggesting a new type of experiment and providing testable predictions, our model shows how conclusions regarding synaptic arithmetic can be influenced by an array of seemingly innocuous experimental design choices.
References:
1 . Poirazi P, Brannon T, Mel BW (2003) Arithmetic of subthreshold synaptic summation in a model CA1 pyramidal cell. Neuron 37:977-87 [PubMed]
2 . Poirazi P, Brannon T, Mel BW (2003) Pyramidal neuron as two-layer neural network. Neuron 37:989-99 [PubMed]
3 . Poirazi P, Brannon T, Mel BW (2003ab-sup) Online Supplement: About the Model Neuron 37 Online:1-20
4 . Polsky A, Mel BW, Schiller J (2004) Computational subunits in thin dendrites of pyramidal cells. Nat Neurosci 7:621-7 [PubMed]
Model Information (Click on a link to find other models with that property)
Model Type: Neuron or other electrically excitable cell;
Brain Region(s)/Organism:
Cell Type(s): Hippocampus CA1 pyramidal GLU cell;
Channel(s): I Na,p; I Na,t; I L high threshold; I T low threshold; I A; I K; I M; I h; I K,Ca; I Calcium;
Gap Junctions:
Receptor(s): GabaA; GabaB; NMDA; Glutamate;
Gene(s):
Transmitter(s):
Simulation Environment: NEURON;
Model Concept(s): Action Potential Initiation; Activity Patterns; Dendritic Action Potentials; Active Dendrites; Influence of Dendritic Geometry; Detailed Neuronal Models; Action Potentials; Depression; Delay;
Implementer(s): Poirazi, Panayiota [poirazi at imbb.forth.gr];
Search NeuronDB for information about:  Hippocampus CA1 pyramidal GLU cell; GabaA; GabaB; NMDA; Glutamate; I Na,p; I Na,t; I L high threshold; I T low threshold; I A; I K; I M; I h; I K,Ca; I Calcium;
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CA1_multi
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VClamp.omod *
                            
                             TITLE Low threshold calcium current
                             :
                             :   Ca++ current responsible for low threshold spikes (LTS)
                             :   RETICULAR THALAMUS
                             :   Differential equations
                             :
                             :   Model of Huguenard & McCormick, J Neurophysiol 68: 1373-1383, 1992.
                             :   The kinetics is described by standard equations (NOT GHK)
                             :   using a m2h format, according to the voltage-clamp data
                             :   (whole cell patch clamp) of Huguenard & Prince, J Neurosci.
                             :   12: 3804-3817, 1992.  The model was introduced in Destexhe et al.
                             :   J. Neurophysiology 72: 803-818, 1994.
                             :   See http://www.cnl.salk.edu/~alain , http://cns.fmed.ulaval.ca
                             :
                             :    - Kinetics adapted to fit the T-channel of reticular neuron                                            :    - Q10 changed to 5 and 3
                             :    - Time constant tau_h fitted from experimental data
                             :    - shift parameter for screening charge
                             :
                             :   ACTIVATION FUNCTIONS FROM EXPERIMENTS (NO CORRECTION)
                             :
                             :   Reversal potential taken from Nernst Equation
                             :
                             :   Written by Alain Destexhe, Salk Institute, Sept 18, 1992
                             :

                             INDEPENDENT {t FROM 0 TO 1 WITH 1 (ms)}

                             NEURON {
                                     SUFFIX it2
                                     USEION ca READ cai, cao WRITE ica
                                     RANGE gcabar, m_inf, tau_m, h_inf, tau_h, shift
                             }

                             UNITS {
                                     (molar) = (1/liter)
                                     (mV) =  (millivolt)
                                     (mA) =  (milliamp)
                                     (mM) =  (millimolar)

                                     FARADAY = (faraday) (coulomb)
                                     R = (k-mole) (joule/degC)
                             }

                             PARAMETER {
                                     v               (mV)
                                     celsius = 36    (degC)
                             :       eca     = 120   (mV)
                                     gcabar  = .00175 (mho/cm2)
                                     shift   = 2     (mV)            : screening charge for Ca_o = 2 mM
                                     cai     = 2.4e-4 (mM)           : adjusted for eca=120 mV
                                     cao     = 2     (mM)
                             }

                             STATE {
                                     m h
                             }

                             ASSIGNED {
                                     ica     (mA/cm2)
                                     carev   (mV)
                                     m_inf
                                     tau_m   (ms)
                                     h_inf
                                     tau_h   (ms)
                                     phi_m
                                     phi_h
                             }

                             BREAKPOINT {
                                     SOLVE castate METHOD euler
                                     carev = (1e3) * (R*(celsius+273.15))/(2*FARADAY) * log (cao/cai)
                                     ica = gcabar * m*m*h * (v-carev)
                             }

                             DERIVATIVE castate {
                                     evaluate_fct(v)

                                     m' = (m_inf - m) / tau_m
                                     h' = (h_inf - h) / tau_h
                             }

                             UNITSOFF
                             INITIAL {
                             :
                             :   Activation functions and kinetics were obtained from
                             :   Huguenard & Prince, and were at 23-25 deg.
                             :   Transformation to 36 deg assuming Q10 of 5 and 3 for m and h
                             :   (as in Coulter et al., J Physiol 414: 587, 1989)
                             :
                                     phi_m = 5.0 ^ ((celsius-24)/10)
                                     phi_h = 3.0 ^ ((celsius-24)/10)

                                     evaluate_fct(v)
                                     m = m_inf
                                     h = h_inf
                             }

                             PROCEDURE evaluate_fct(v(mV)) { 
                             :
                             :   Time constants were obtained from J. Huguenard
                             :

                                     m_inf = 1.0 / ( 1 + exp(-(v+shift+50)/7.4) )
                                     h_inf = 1.0 / ( 1 + exp((v+shift+78)/5.0) )

                                     tau_m = ( 3 + 1.0 / ( exp((v+shift+25)/10) + exp(-(v+shift+100)/15) ) ) / phi_m
                                     tau_h = ( 85 + 1.0 / ( exp((v+shift+46)/4) + exp(-(v+shift+405)/50) ) ) / phi_h
                             }
                             UNITSON

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