Neural mass model of the sleeping cortex (Weigenand et al 2014)

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Accession:226472
Generates typical EEG data of sleeping Humans for sleep stages N2/N3 as well as wakefulness
Reference:
1 . Weigenand A, Schellenberger Costa M, Ngo HV, Claussen JC, Martinetz T (2014) Characterization of K-complexes and slow wave activity in a neural mass model. PLoS Comput Biol 10:e1003923 [PubMed]
Model Information (Click on a link to find other models with that property)
Model Type: Neural mass;
Brain Region(s)/Organism: Neocortex;
Cell Type(s): Neocortex L2/3 pyramidal GLU cell; Neocortex layer 2-3 interneuron;
Channel(s): I_K,Na; Na/K pump;
Gap Junctions:
Receptor(s): AMPA; Gaba;
Gene(s):
Transmitter(s):
Simulation Environment: C or C++ program (web link to model); MATLAB;
Model Concept(s): Bifurcation; Sleep; Activity Patterns;
Implementer(s): Schellenberger Costa, Michael [mschellenbergercosta at gmail.com];
Search NeuronDB for information about:  Neocortex L2/3 pyramidal GLU cell; AMPA; Gaba; I_K,Na; Na/K pump;
function Create_Data()
% This function creates the model data depicted in Figure 4-6 of
%
% Characterization of K-Complexes and Slow Wave Activity in a Neural Mass Model
% A Weigenand, M Schellenberger Costa, H-VV Ngo, JC Claussen, T Martinetz
% PLoS Computational Biology. 2014;10:e1003923

% Move to source folder(assuming it contains the Figures folder
cd ..;

% Check if the executable exists and compile if needed
if(exist('Cortex_mex.mesa64', 'file')==0)
    mex CXXFLAGS="\$CXXFLAGS -std=c++11 -O3" Cortex_mex.cpp Cortical_Column.cpp;
end

% Add the path to the simulation routine
addpath(pwd);

% Go back into figures folder
cd Figures;

% Time series
Data_Time_Series(1);
Data_Time_Series(2);

% Time series
Data_Stimulation();
end

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