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Dopaminergic subtantia nigra neuron (Moubarak et al 2019)
 
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Model Information
Model File
Citations
Accession:
245427
Axon initial segment (AIS) geometry critically influences neuronal excitability. Interestingly, the axon of substantia nigra pars compacta (SNc) dopaminergic (DA) neurons displays a highly variable location and most often arises from an axon-bearing dendrite (ABD). We combined current-clamp somatic and dendritic recordings, outside-out recordings of dendritic sodium and potassium currents, morphological reconstructions and multi-compartment modelling to determine cell-to-cell variations in AIS and ABD geometry and their influence on neuronal output (spontaneous pacemaking frequency, AP shape). Both AIS and ABD geometries are highly variable between SNc DA neurons. Surprisingly, we found that AP shape and pacemaking frequency were independent of AIS geometry. Modelling realistic morphological and biophysical variations clarify this result: in SNc DA neurons, the complexity of the ABD combined with its excitability predominantly define pacemaking frequency and AP shape, such that large variations in AIS geometry negligibly affect neuronal output, and are tolerated.
Reference:
1 .
Moubarak E, Engel D, Dufour MA, Tapia M, Tell F, Goaillard JM (2019) Robustness to Axon Initial Segment Variation Is Explained by Somatodendritic Excitability in Rat Substantia Nigra Dopaminergic Neurons.
J Neurosci
39
:5044-5063
[
PubMed
]
Model Information
(Click on a link to find other models with that property)
Model Type:
Brain Region(s)/Organism:
Basal ganglia;
Cell Type(s):
Substantia nigra pars compacta DA cell;
Channel(s):
Ca pump;
I A;
I Calcium;
I h;
I Na,t;
I K;
Gap Junctions:
Receptor(s):
Gene(s):
Transmitter(s):
Simulation Environment:
NEURON;
Model Concept(s):
Action Potential Initiation;
Pacemaking mechanism;
Implementer(s):
Tell, Fabien [fabien.tell at univ-amu.fr];
Moubarak, Estelle ;
Search NeuronDB
for information about:
Substantia nigra pars compacta DA cell
;
I Na,t
;
I A
;
I K
;
I h
;
I Calcium
;
Ca pump
;
Download the displayed file
/
MoubarakEtAl2018
data
Readme.txt
ca_diffusion.mod
CAV13.mod
IH.mod
IK_SK.mod
KV4_DA.mod
KV4_DAsoma.mod
KVDR.mod
NA12.mod
passive.mod
cell_0.hoc
cell_1.hoc
cell_2.hoc
cell_3.hoc
cell_4.hoc
init0.hoc
init1.hoc
init2.hoc
init3.hoc
init4.hoc
Spike_analysis.hoc
spike_extract_frequency.hoc
start_linux.sh
variable_length_0.hoc
variable_length_1.hoc
variable_length_2.hoc
variable_length_3.hoc
variable_length_4.hoc
#!/bin/bash for i in 0 1 2 3 4; do nrnivmodl nrngui init$i.hoc done
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