Advanced search
SenseLab
SimToolDB
ModelDB Help
User account
Login
Register
Find models by
Model name
First author
Each author
Region(circuits)
Find models for
Cell type
Current
Receptor
Gene
Transmitters
Concept
Simulators
Methods
Find models of
Realistic Networks
Neurons
Electrical synapses (gap junctions)
Chemical synapses
Ion channels
Neuromuscular junctions
Axons
Pathophysiology
Other resources
SenseLab mailing list
ModelDB related resources
Computational neuroscience ecosystem
Models in a git repository
Spike timing detection in different forms of LTD (Doi et al 2005)
 
Download zip file
Help downloading and running models
Model Information
Model File
Citations
Accession:
49305
To understand the spike-timing detection mechanisms in cerebellar long-term depression (LTD), we developed a kinetic model of Ca dynamics within a Purkinje dendritic spine. In our kinetic simulation, IP3 was first produced via the metabotropic pathway of parallel fiber (PF) inputs, and the Ca influx in response to the climbing fiber (CF) input triggered regenerative Ca-induced Ca release from the internal stores via the IP3 receptors activated by the increased IP3. The delay in IP3 increase caused by the PF metabotropic pathway generated the optimal PF–CF interval. The Ca dynamics revealed a threshold for large Ca2 release that decreased as IP3 increased, and it coherently explained the different forms of LTD. See paper for more and details.
Reference:
1 .
Doi T, Kuroda S, Michikawa T, Kawato M (2005) Inositol 1,4,5-trisphosphate-dependent Ca2+ threshold dynamics detect spike timing in cerebellar Purkinje cells.
J Neurosci
25
:950-61
[
PubMed
]
Model Information
(Click on a link to find other models with that property)
Model Type:
Synapse;
Brain Region(s)/Organism:
Cell Type(s):
Cerebellum Purkinje GABA cell;
Channel(s):
I Calcium;
Gap Junctions:
Receptor(s):
IP3;
Gene(s):
Transmitter(s):
Glutamate;
Simulation Environment:
GENESIS (web link to model);
MATLAB;
Model Concept(s):
Coincidence Detection;
Synaptic Plasticity;
Depression;
Signaling pathways;
Calcium dynamics;
Implementer(s):
Search NeuronDB
for information about:
Cerebellum Purkinje GABA cell
;
IP3
;
I Calcium
;
Glutamate
;
/
DoiEtAl2005WebLink
ATR CNS Computational Neuroscience Laboratories_files
old_readme.html
readme.html
ATR CNS Computational Neuroscience Laboratories.html
File not selected
<- Select file from this column.
Loading data, please wait...