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Parallel network simulations with NEURON (Migliore et al 2006)
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Accession:
64229
The NEURON simulation environment has been extended to support parallel network simulations. The performance of three published network models with very different spike patterns exhibits superlinear speedup on Beowulf clusters.
Reference:
1 .
Migliore M, Cannia C, Lytton WW, Markram H, Hines ML (2006) Parallel network simulations with NEURON.
J Comput Neurosci
21
:119-29
[
PubMed
]
Model Information
(Click on a link to find other models with that property)
Model Type:
Realistic Network;
Brain Region(s)/Organism:
Cell Type(s):
Channel(s):
Gap Junctions:
Receptor(s):
Gene(s):
Transmitter(s):
Simulation Environment:
NEURON;
Model Concept(s):
Methods;
Implementer(s):
Hines, Michael [Michael.Hines at Yale.edu];
Download the displayed file
/
netmod
pardentategyrus
readme.html
*
Other models using readme.html:
Cell splitting in neural networks extends strong scaling (Hines et al. 2008)
Dentate gyrus network model (Santhakumar et al 2005)
bgka.mod
*
Other models using bgka.mod:
Basket cell extrasynaptic inhibition modulates network oscillations (Proddutur et al., 2013)
CA1 pyramidal neuron: synaptic plasticity during theta cycles (Saudargiene et al. 2015)
Cell splitting in neural networks extends strong scaling (Hines et al. 2008)
Dentate gyrus (Morgan et al. 2007, 2008, Santhakumar et al. 2005, Dyhrfjeld-Johnsen et al. 2007)
Dentate gyrus network model (Santhakumar et al 2005)
Dentate gyrus network model (Tejada et al 2014)
Effects of increasing CREB on storage and recall processes in a CA1 network (Bianchi et al. 2014)
Encoding and retrieval in a model of the hippocampal CA1 microcircuit (Cutsuridis et al. 2009)
Long time windows from theta modulated inhib. in entorhinal–hippo. loop (Cutsuridis & Poirazi 2015)
State dependent drug binding to sodium channels in the dentate gyrus (Thomas & Petrou 2013)
Status epilepticus alters dentate basket cell tonic inhibition (Yu J et al 2013)
The APP in C-terminal domain alters CA1 neuron firing (Pousinha et al 2019)
CaBK.mod
*
Other models using CaBK.mod:
Basket cell extrasynaptic inhibition modulates network oscillations (Proddutur et al., 2013)
Cell splitting in neural networks extends strong scaling (Hines et al. 2008)
Dentate gyrus network model (Santhakumar et al 2005)
Dentate gyrus network model (Tejada et al 2014)
State dependent drug binding to sodium channels in the dentate gyrus (Thomas & Petrou 2013)
Status epilepticus alters dentate basket cell tonic inhibition (Yu J et al 2013)
ccanl.mod
*
Other models using ccanl.mod:
CA1 network model for place cell dynamics (Turi et al 2019)
CA1 network model: interneuron contributions to epileptic deficits (Shuman et al 2019)
CA1 pyramidal neuron: synaptic plasticity during theta cycles (Saudargiene et al. 2015)
Cell splitting in neural networks extends strong scaling (Hines et al. 2008)
Dentate gyrus (Morgan et al. 2007, 2008, Santhakumar et al. 2005, Dyhrfjeld-Johnsen et al. 2007)
Dentate gyrus network model (Santhakumar et al 2005)
Dentate gyrus network model (Tejada et al 2014)
Effects of increasing CREB on storage and recall processes in a CA1 network (Bianchi et al. 2014)
Encoding and retrieval in a model of the hippocampal CA1 microcircuit (Cutsuridis et al. 2009)
Long time windows from theta modulated inhib. in entorhinal–hippo. loop (Cutsuridis & Poirazi 2015)
State dependent drug binding to sodium channels in the dentate gyrus (Thomas & Petrou 2013)
The APP in C-terminal domain alters CA1 neuron firing (Pousinha et al 2019)
Gfluct2.mod
*
Other models using Gfluct2.mod:
Cell splitting in neural networks extends strong scaling (Hines et al. 2008)
Dentate gyrus network model (Santhakumar et al 2005)
Dentate gyrus network model (Tejada et al 2014)
Engaging distinct oscillatory neocortical circuits (Vierling-Claassen et al. 2010)
Fluctuating synaptic conductances recreate in-vivo-like activity (Destexhe et al 2001)
State dependent drug binding to sodium channels in the dentate gyrus (Thomas & Petrou 2013)
gskch.mod
*
Other models using gskch.mod:
Basket cell extrasynaptic inhibition modulates network oscillations (Proddutur et al., 2013)
Cell splitting in neural networks extends strong scaling (Hines et al. 2008)
State dependent drug binding to sodium channels in the dentate gyrus (Thomas & Petrou 2013)
Status epilepticus alters dentate basket cell tonic inhibition (Yu J et al 2013)
hyperde3.mod
*
Other models using hyperde3.mod:
Basket cell extrasynaptic inhibition modulates network oscillations (Proddutur et al., 2013)
Cell splitting in neural networks extends strong scaling (Hines et al. 2008)
Dentate gyrus (Morgan et al. 2007, 2008, Santhakumar et al. 2005, Dyhrfjeld-Johnsen et al. 2007)
Dentate gyrus network model (Santhakumar et al 2005)
Dentate gyrus network model (Tejada et al 2014)
Long time windows from theta modulated inhib. in entorhinal–hippo. loop (Cutsuridis & Poirazi 2015)
State dependent drug binding to sodium channels in the dentate gyrus (Thomas & Petrou 2013)
Status epilepticus alters dentate basket cell tonic inhibition (Yu J et al 2013)
ichan2.mod
*
Other models using ichan2.mod:
Basket cell extrasynaptic inhibition modulates network oscillations (Proddutur et al., 2013)
Cell splitting in neural networks extends strong scaling (Hines et al. 2008)
Dentate Gyrus Feed-forward inhibition (Ferrante et al. 2009)
Dentate Gyrus Feed-forward inhibition (Ferrante et al. 2009)
Dentate gyrus (Morgan et al. 2007, 2008, Santhakumar et al. 2005, Dyhrfjeld-Johnsen et al. 2007)
Dentate gyrus network model (Santhakumar et al 2005)
Dentate gyrus network model (Tejada et al 2014)
Status epilepticus alters dentate basket cell tonic inhibition (Yu J et al 2013)
LcaMig.mod
*
Other models using LcaMig.mod:
Basket cell extrasynaptic inhibition modulates network oscillations (Proddutur et al., 2013)
CA1 network model for place cell dynamics (Turi et al 2019)
CA1 network model: interneuron contributions to epileptic deficits (Shuman et al 2019)
CA1 pyramidal neuron: synaptic plasticity during theta cycles (Saudargiene et al. 2015)
Cell splitting in neural networks extends strong scaling (Hines et al. 2008)
Dentate gyrus (Morgan et al. 2007, 2008, Santhakumar et al. 2005, Dyhrfjeld-Johnsen et al. 2007)
Dentate gyrus network model (Santhakumar et al 2005)
Dentate gyrus network model (Tejada et al 2014)
Effects of increasing CREB on storage and recall processes in a CA1 network (Bianchi et al. 2014)
Encoding and retrieval in a model of the hippocampal CA1 microcircuit (Cutsuridis et al. 2009)
Long time windows from theta modulated inhib. in entorhinal–hippo. loop (Cutsuridis & Poirazi 2015)
State dependent drug binding to sodium channels in the dentate gyrus (Thomas & Petrou 2013)
Status epilepticus alters dentate basket cell tonic inhibition (Yu J et al 2013)
The APP in C-terminal domain alters CA1 neuron firing (Pousinha et al 2019)
nca.mod
*
Other models using nca.mod:
Basket cell extrasynaptic inhibition modulates network oscillations (Proddutur et al., 2013)
CA1 network model for place cell dynamics (Turi et al 2019)
CA1 network model: interneuron contributions to epileptic deficits (Shuman et al 2019)
CA1 pyramidal neuron: synaptic plasticity during theta cycles (Saudargiene et al. 2015)
Cell splitting in neural networks extends strong scaling (Hines et al. 2008)
Dentate gyrus network model (Santhakumar et al 2005)
Dentate gyrus network model (Tejada et al 2014)
Effects of increasing CREB on storage and recall processes in a CA1 network (Bianchi et al. 2014)
Encoding and retrieval in a model of the hippocampal CA1 microcircuit (Cutsuridis et al. 2009)
Long time windows from theta modulated inhib. in entorhinal–hippo. loop (Cutsuridis & Poirazi 2015)
State dependent drug binding to sodium channels in the dentate gyrus (Thomas & Petrou 2013)
Status epilepticus alters dentate basket cell tonic inhibition (Yu J et al 2013)
The APP in C-terminal domain alters CA1 neuron firing (Pousinha et al 2019)
tca.mod
*
Other models using tca.mod:
Basket cell extrasynaptic inhibition modulates network oscillations (Proddutur et al., 2013)
Cell splitting in neural networks extends strong scaling (Hines et al. 2008)
Dentate gyrus (Morgan et al. 2007, 2008, Santhakumar et al. 2005, Dyhrfjeld-Johnsen et al. 2007)
Dentate gyrus network model (Santhakumar et al 2005)
Dentate gyrus network model (Tejada et al 2014)
State dependent drug binding to sodium channels in the dentate gyrus (Thomas & Petrou 2013)
Status epilepticus alters dentate basket cell tonic inhibition (Yu J et al 2013)
DG500_M7.hoc
*
Other models using DG500_M7.hoc:
Cell splitting in neural networks extends strong scaling (Hines et al. 2008)
Dentate gyrus network model (Santhakumar et al 2005)
dgnetactivity.jpg
*
Other models using dgnetactivity.jpg:
Cell splitting in neural networks extends strong scaling (Hines et al. 2008)
Dentate gyrus network model (Santhakumar et al 2005)
dgnettraces.jpg
*
Other models using dgnettraces.jpg:
Cell splitting in neural networks extends strong scaling (Hines et al. 2008)
Dentate gyrus network model (Santhakumar et al 2005)
init.hoc
initorig.hoc
*
Other models using initorig.hoc:
Cell splitting in neural networks extends strong scaling (Hines et al. 2008)
M2I10sp.txt
modstat
*
Other models using modstat:
Cell splitting in neural networks extends strong scaling (Hines et al. 2008)
mosinit.hoc
*
Other models using mosinit.hoc:
Cell splitting in neural networks extends strong scaling (Hines et al. 2008)
Dentate gyrus network model (Santhakumar et al 2005)
parRI10sp.hoc
perfrun.hoc
RI10sp.hoc
test1.sh
*
Other models using test1.sh:
Cell splitting in neural networks extends strong scaling (Hines et al. 2008)
time
*
Other models using time:
Cell splitting in neural networks extends strong scaling (Hines et al. 2008)
load_file("nrngui.hoc") load_file("RI10sp.hoc") quit()
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