NEURON interfaces to MySQL and the SPUD feature extraction algorithm (Neymotin et al. 2008)

 Download zip file 
Help downloading and running models
Accession:97868
See the readme.txt for information on setting up this interface to a MySQL server from the NEURON simulator. Note the SPUD feature extraction algorithm includes its own readme in the spud directory.
Reference:
1 . Neymotin S, Uhlrich DJ, Manning KA, Lytton WW (2008) Data mining of time-domain features from neural extracellular field data Applic. of Comput. Intel. in Bioinf. and Biomed.: Current Trends and Open Problems 151:119-140
Model Information (Click on a link to find other models with that property)
Model Type:
Brain Region(s)/Organism:
Cell Type(s):
Channel(s):
Gap Junctions:
Receptor(s):
Gene(s):
Transmitter(s):
Simulation Environment: NEURON;
Model Concept(s): Methods;
Implementer(s): Lytton, William [bill.lytton at downstate.edu]; Neymotin, Sam [Samuel.Neymotin at nki.rfmh.org];
Files displayed below are from the implementation
/* Copyright (C) 2000 MySQL AB

   This program is free software; you can redistribute it and/or modify
   it under the terms of the GNU General Public License as published by
   the Free Software Foundation; version 2 of the License.

   This program is distributed in the hope that it will be useful,
   but WITHOUT ANY WARRANTY; without even the implied warranty of
   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
   GNU General Public License for more details.

   You should have received a copy of the GNU General Public License
   along with this program; if not, write to the Free Software
   Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA */

/* Error messages for MySQL clients */
/* (Error messages for the daemon are in share/language/errmsg.sys) */

#ifdef	__cplusplus
extern "C" {
#endif
void	init_client_errs(void);
void	finish_client_errs(void);
extern const char *client_errors[];	/* Error messages */
#ifdef	__cplusplus
}
#endif

#define CR_MIN_ERROR		2000	/* For easier client code */
#define CR_MAX_ERROR		2999
#if defined(OS2) && defined(MYSQL_SERVER)
#define CER(X) client_errors[(X)-CR_MIN_ERROR]
#elif !defined(ER)
#define ER(X) client_errors[(X)-CR_MIN_ERROR]
#endif
#define CLIENT_ERRMAP		2	/* Errormap used by my_error() */

/* Do not add error numbers before CR_ERROR_FIRST. */
/* If necessary to add lower numbers, change CR_ERROR_FIRST accordingly. */
#define CR_ERROR_FIRST  	2000 /*Copy first error nr.*/
#define CR_UNKNOWN_ERROR	2000
#define CR_SOCKET_CREATE_ERROR	2001
#define CR_CONNECTION_ERROR	2002
#define CR_CONN_HOST_ERROR	2003
#define CR_IPSOCK_ERROR		2004
#define CR_UNKNOWN_HOST		2005
#define CR_SERVER_GONE_ERROR	2006
#define CR_VERSION_ERROR	2007
#define CR_OUT_OF_MEMORY	2008
#define CR_WRONG_HOST_INFO	2009
#define CR_LOCALHOST_CONNECTION 2010
#define CR_TCP_CONNECTION	2011
#define CR_SERVER_HANDSHAKE_ERR 2012
#define CR_SERVER_LOST		2013
#define CR_COMMANDS_OUT_OF_SYNC 2014
#define CR_NAMEDPIPE_CONNECTION 2015
#define CR_NAMEDPIPEWAIT_ERROR  2016
#define CR_NAMEDPIPEOPEN_ERROR  2017
#define CR_NAMEDPIPESETSTATE_ERROR 2018
#define CR_CANT_READ_CHARSET	2019
#define CR_NET_PACKET_TOO_LARGE 2020
#define CR_EMBEDDED_CONNECTION	2021
#define CR_PROBE_SLAVE_STATUS   2022
#define CR_PROBE_SLAVE_HOSTS    2023
#define CR_PROBE_SLAVE_CONNECT  2024
#define CR_PROBE_MASTER_CONNECT 2025
#define CR_SSL_CONNECTION_ERROR 2026
#define CR_MALFORMED_PACKET     2027
#define CR_WRONG_LICENSE	2028

/* new 4.1 error codes */
#define CR_NULL_POINTER		2029
#define CR_NO_PREPARE_STMT	2030
#define CR_PARAMS_NOT_BOUND	2031
#define CR_DATA_TRUNCATED	2032
#define CR_NO_PARAMETERS_EXISTS 2033
#define CR_INVALID_PARAMETER_NO 2034
#define CR_INVALID_BUFFER_USE	2035
#define CR_UNSUPPORTED_PARAM_TYPE 2036

#define CR_SHARED_MEMORY_CONNECTION             2037
#define CR_SHARED_MEMORY_CONNECT_REQUEST_ERROR  2038
#define CR_SHARED_MEMORY_CONNECT_ANSWER_ERROR   2039
#define CR_SHARED_MEMORY_CONNECT_FILE_MAP_ERROR 2040
#define CR_SHARED_MEMORY_CONNECT_MAP_ERROR      2041
#define CR_SHARED_MEMORY_FILE_MAP_ERROR         2042
#define CR_SHARED_MEMORY_MAP_ERROR              2043
#define CR_SHARED_MEMORY_EVENT_ERROR     	2044
#define CR_SHARED_MEMORY_CONNECT_ABANDONED_ERROR 2045
#define CR_SHARED_MEMORY_CONNECT_SET_ERROR      2046
#define CR_CONN_UNKNOW_PROTOCOL 		2047
#define CR_INVALID_CONN_HANDLE			2048
#define CR_SECURE_AUTH                          2049
#define CR_FETCH_CANCELED                       2050
#define CR_NO_DATA                              2051
#define CR_NO_STMT_METADATA                     2052
#define CR_NO_RESULT_SET                        2053
#define CR_NOT_IMPLEMENTED                      2054
#define CR_SERVER_LOST_EXTENDED			2055
#define CR_ERROR_LAST  /*Copy last error nr:*/  2055
/* Add error numbers before CR_ERROR_LAST and change it accordingly. */


Loading data, please wait...