NEURON interfaces to MySQL and the SPUD feature extraction algorithm (Neymotin et al. 2008)

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Accession:97868
See the readme.txt for information on setting up this interface to a MySQL server from the NEURON simulator. Note the SPUD feature extraction algorithm includes its own readme in the spud directory.
Reference:
1 . Neymotin S, Uhlrich DJ, Manning KA, Lytton WW (2008) Data mining of time-domain features from neural extracellular field data Applic. of Comput. Intel. in Bioinf. and Biomed.: Current Trends and Open Problems 151:119-140
Model Information (Click on a link to find other models with that property)
Model Type:
Brain Region(s)/Organism:
Cell Type(s):
Channel(s):
Gap Junctions:
Receptor(s):
Gene(s):
Transmitter(s):
Simulation Environment: NEURON;
Model Concept(s): Methods;
Implementer(s): Lytton, William [bill.lytton at downstate.edu]; Neymotin, Sam [Samuel.Neymotin at nki.rfmh.org];
Files displayed below are from the implementation
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#define HAVE_SYS_STAT_H 1

/* Define to 1 if you have the <sys/stream.h> header file. */
/* #undef HAVE_SYS_STREAM_H */

/* Define to 1 if you have the <sys/timeb.h> header file. */
#define HAVE_SYS_TIMEB_H 1

/* Define to 1 if you have the <sys/types.h> header file. */
#define HAVE_SYS_TYPES_H 1

/* Define to 1 if you have the <sys/un.h> header file. */
#define HAVE_SYS_UN_H 1

/* Define to 1 if you have the <sys/utime.h> header file. */
/* #undef HAVE_SYS_UTIME_H */

/* Define to 1 if you have the <sys/vadvise.h> header file. */
/* #undef HAVE_SYS_VADVISE_H */

/* Define to 1 if you have the <sys/wait.h> header file. */
#define HAVE_SYS_WAIT_H 1

/* Define to 1 if you have the `tcgetattr' function. */
#define HAVE_TCGETATTR 1

/* Define to 1 if you have the `tell' function. */
/* #undef HAVE_TELL */

/* Define to 1 if you have the `tempnam' function. */
#define HAVE_TEMPNAM 1

/* Define to 1 if you have the <termbits.h> header file. */
/* #undef HAVE_TERMBITS_H */

/* Define to 1 if you have the <termcap.h> header file. */
#define HAVE_TERMCAP_H 1

/* Define to 1 if you have the <termios.h> header file. */
#define HAVE_TERMIOS_H 1

/* Define to 1 if you have the <termio.h> header file. */
#define HAVE_TERMIO_H 1

/* Define to 1 if you have the <term.h> header file. */
#define HAVE_TERM_H 1

/* Define to 1 if you have the `thr_setconcurrency' function. */
/* #undef HAVE_THR_SETCONCURRENCY */

/* Timespec has a ts_sec instead of tv_sev */
/* #undef HAVE_TIMESPEC_TS_SEC */

/* Have the tzname variable */
#define HAVE_TZNAME 1

/* national Unicode collations */
#define HAVE_UCA_COLLATIONS 1

/* system headers define uchar */
/* #undef HAVE_UCHAR */

/* system headers define uint */
#define HAVE_UINT 1

/* system headers define ulong */
#define HAVE_ULONG 1

/* Define to 1 if you have the <unistd.h> header file. */
#define HAVE_UNISTD_H 1

/* Have UnixWare 7 (or similar) almost-POSIX threading library */
/* #undef HAVE_UNIXWARE7_THREADS */

/* sighold() is present and usable */
/* #undef HAVE_USG_SIGHOLD */

/* certain Japanese customer */
/* #undef HAVE_UTF8_GENERAL_CS */

/* Define to 1 if you have the <utime.h> header file. */
#define HAVE_UTIME_H 1

/* Define to 1 if `utime(file, NULL)' sets file's timestamp to the present. */
#define HAVE_UTIME_NULL 1

/* Define to 1 if the system has the type `u_int32_t'. */
#define HAVE_U_INT32_T 1

/* Define to 1 if you have the <varargs.h> header file. */
#define HAVE_VARARGS_H 1

/* Define to 1 if you have the `vidattr' function. */
/* #undef HAVE_VIDATTR */

/* Define to enable buffered read. This works only if syscalls read/recv
   return as soon as there is some data in the kernel buffer, no matter how
   big the given buffer is. */
#define HAVE_VIO_READ_BUFF 1

/* Found vis.h and the strvis() function */
/* #undef HAVE_VIS_H */

/* Define to 1 if you have the `vprintf' function. */
#define HAVE_VPRINTF 1

/* Define to 1 if you have the <wchar.h> header file. */
#define HAVE_WCHAR_H 1

/* Define if you check wcsdup */
#define HAVE_WCSDUP 

/* Define if you have wctomb */
#define HAVE_WCTOMB 

/* Define to 1 if you have the <wctype.h> header file. */
#define HAVE_WCTYPE_H 1

/* Define if you have wcwidth */
#define HAVE_WCWIDTH 

/* Defined by configure. Using yaSSL for OpenSSL emulation. */
#define HAVE_YASSL 1

/* Define if /proc/meminfo shows the huge page size (Linux only) */
#define HUGETLB_USE_PROC_MEMINFO 1

/* Define if you have -lwrap */
/* #undef LIBWRAP */

/* Machine type name, eg sun10 */
#define MACHINE_TYPE "x86_64"

/* Maximum number of indexes per table */
#define MAX_INDEXES 64

/* Define the default charset name */
#define MYSQL_DEFAULT_CHARSET_NAME "latin1"

/* Define the default charset name */
#define MYSQL_DEFAULT_COLLATION_NAME "latin1_swedish_ci"

/* Including Ndb Cluster DB sci transporter */
/* #undef NDB_SCI_TRANSPORTER */

/* Including Ndb Cluster DB shared memory transporter */
#define NDB_SHM_TRANSPORTER 1

/* NDB build version */
#define NDB_VERSION_BUILD 37

/* NDB major version */
#define NDB_VERSION_MAJOR 5

/* NDB minor version */
#define NDB_VERSION_MINOR 0

/* NDB status version */
#define NDB_VERSION_STATUS ""

/* Name of package */
#define PACKAGE "mysql"

/* Define to the address where bug reports for this package should be sent. */
#define PACKAGE_BUGREPORT ""

/* Define to the full name of this package. */
#define PACKAGE_NAME ""

/* Define to the full name and version of this package. */
#define PACKAGE_STRING ""

/* Define to the one symbol short name of this package. */
#define PACKAGE_TARNAME ""

/* Define to the version of this package. */
#define PACKAGE_VERSION ""

/* mysql client protocol version */
#define PROTOCOL_VERSION 10

/* qsort returns void */
#define QSORT_TYPE_IS_VOID 1

/* The return type of qsort (int or void). */
#define RETQSORTTYPE void

/* Define as the return type of signal handlers (`int' or `void'). */
#define RETSIGTYPE void

/* The size of a `char', as computed by sizeof. */
#define SIZEOF_CHAR 1

/* The size of a `char*', as computed by sizeof. */
#define SIZEOF_CHARP 8

/* The size of a `int', as computed by sizeof. */
#define SIZEOF_INT 4

/* The size of a `long', as computed by sizeof. */
#define SIZEOF_LONG 8

/* The size of a `long long', as computed by sizeof. */
#define SIZEOF_LONG_LONG 8

/* */
#define SIZEOF_OFF_T 8

/* The size of a `short', as computed by sizeof. */
#define SIZEOF_SHORT 2

/* The base type of the last arg to accept */
#define SOCKET_SIZE_TYPE socklen_t

/* Last argument to get/setsockopt */
/* #undef SOCKOPT_OPTLEN_TYPE */

/* Broken sprintf */
/* #undef SPRINTF_RETURNS_GARBAGE */

/* POSIX sprintf */
#define SPRINTF_RETURNS_INT 1

/* Broken sprintf */
/* #undef SPRINTF_RETURNS_PTR */

/* If using the C implementation of alloca, define if you know the
   direction of stack growth for your system; otherwise it will be
   automatically deduced at run-time.
	STACK_DIRECTION > 0 => grows toward higher addresses
	STACK_DIRECTION < 0 => grows toward lower addresses
	STACK_DIRECTION = 0 => direction of growth unknown */
#define STACK_DIRECTION -1

/* Define to 1 if the `S_IS*' macros in <sys/stat.h> do not work properly. */
/* #undef STAT_MACROS_BROKEN */

/* Define to 1 if you have the ANSI C header files. */
#define STDC_HEADERS 1

/* d_ino member present in struct dirent */
#define STRUCT_DIRENT_HAS_D_INO 1

/* d_namlen member present in struct dirent */
/* #undef STRUCT_DIRENT_HAS_D_NAMLEN */

/* The struct rlimit type to use with setrlimit */
#define STRUCT_RLIMIT struct rlimit

/* Name of system, eg solaris */
#define SYSTEM_TYPE "unknown-linux-gnu"

/* Whether we build for Linux */
#define TARGET_OS_LINUX 1

/* Define if you want to have threaded code. This may be undef on client code
   */
#define THREAD 1

/* Should be client be thread safe */
#define THREAD_SAFE_CLIENT 1

/* Define to 1 if you can safely include both <sys/time.h> and <time.h>. */
#define TIME_WITH_SYS_TIME 1

/* declaration of TIOCSTAT in sys/ioctl.h */
/* #undef TIOCSTAT_IN_SYS_IOCTL */

/* Define to 1 if your <sys/time.h> declares `struct tm'. */
/* #undef TM_IN_SYS_TIME */

/* used libedit interface (can we dereference result of
   rl_completion_entry_function) */
/* #undef USE_LIBEDIT_INTERFACE */

/* Use multi-byte character routines */
#define USE_MB 1

/* */
#define USE_MB_IDENT 1

/* Needs to use mysys_new helpers */
#define USE_MYSYS_NEW 1

/* used new readline interface (are rl_completion_func_t and
   rl_compentry_func_t defined) */
#define USE_NEW_READLINE_INTERFACE 1

/* the pstack backtrace library */
/* #undef USE_PSTACK */

/* Version number of package */
#define VERSION "5.0.37"

/* sighandler type is void (*signal ()) (); */
#define VOID_SIGHANDLER 1

/* Define to 1 if your processor stores words with the most significant byte
   first (like Motorola and SPARC, unlike Intel and VAX). */
/* #undef WORDS_BIGENDIAN */

/* Number of bits in a file offset, on hosts where this is settable. */
/* #undef _FILE_OFFSET_BITS */

/* makes fseeko etc. visible, on some hosts. */
/* #undef _LARGEFILE_SOURCE */

/* Large files support on AIX-style hosts. */
/* #undef _LARGE_FILES */

/* Define to empty if `const' does not conform to ANSI C. */
/* #undef const */

/* Define to `__inline__' or `__inline' if that's what the C compiler
   calls it, or to nothing if 'inline' is not supported under any name.  */
#ifndef __cplusplus
/* #undef inline */
#endif

/* Define to `long' if <sys/types.h> does not define. */
/* #undef off_t */

/* Define to `unsigned' if <sys/types.h> does not define. */
/* #undef size_t */

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