############################################################################################# # setup # handler for printing out time during simulation run def fi(): for i in range(0,int(h.tstop),100): h.cvode.event(i, "print " + str(i)) import sys import os import string import types from neuron import * # simctrl stuff h("strdef simname, allfiles, simfiles, output_file, datestr, uname, osname, comment") h.simname=simname = "mtlhpc" h.allfiles=allfiles = "geom.hoc pyinit.py geom.py onepyr.py" h.simfiles=simfiles = "pyinit.py geom.py onepyr.py" h("runnum=1") runnum = 1.0 h.datestr=datestr = "11may20" h.output_file=output_file = "data/11may20.05" h.uname=uname = "x86_64" h.osname=osname="linux" h("templates_loaded=0") templates_loaded=0 h("xwindows=1.0") xwindows = 1.0 h.xopen("nrnoc.hoc") h.xopen("init.hoc") from pyinit import * # from geom import * fih = h.FInitializeHandler(1, fi) #############################################################################################