import params import MTrealSoma as realSoma #import MCrealSoma as realSoma somaAxisUp = [ 2100.0-100, 2800.0-100, 2100.0-100] somaAxisDw = [ x-100 for x in somaAxisUp ] from math import pi, exp # specific grow parameters GROW_MAX_ITERATIONS = 2000 GROW_MAX_ATTEMPTS = 100 ## apical params APIC_DIAM = 4 # modified from Francesco's value APIC_LEN_MAX = 350.-150 ## tuft params ## tuft params TUFT_DIAM = 0.8 # modified from Francesco's value N_MIN_TUFT = 5 N_MAX_TUFT = 5 TUFT_MIN_LEN = 40 TUFT_MAX_LEN = 80 # dendrites definition N_MIN_DEND = 2 N_MAX_DEND = 6 N_MEAN_DEND = 3 # dendrites max length, normal distribution DEND_LEN_MU = 654.47 DEND_LEN_VAR = 286.43 ** 2 DEND_LEN_MIN = 50. DEND_LEN_MAX = 1260.0 # dendrites bifurcation parameters, exponential distribution branch_len_mean = [ 23.3, 53.3, 142, 180, 306.7, 106.7 ] branch_len_min = [ 20, 20, 20, 20, 20, 2 ] branch_len_max = [ 100, 260, 380, 520, 560, 240 ] branch_prob = [ 0.9, 0.71, 0.63, 0.58, 0.25, 0.13 ] ## random walk, noise GRW_WALK_LEN = 20. BIFURC_PHI_MU = 0.5 BIFURC_PHI_MIN = pi / 24. BIFURC_PHI_MAX = pi / 5. NS_PHI_B = 0.15 NS_PHI_MIN = -6. NS_PHI_MAX = 6. NS_THETA_B = 0.15 NS_THETA_MIN = -1.2 NS_THETA_MAX = 1.2 GROW_RESISTANCE = 1.5 # glomerulus radius GLOM_DIST = 25 init_theta = pi / 2 diam_min_dend = 2.25 diam_max_dend = 2.75 diam_tape_dend = 0.0013*4/3