from neuron import h import matplotlib matplotlib.use('Agg') import matplotlib.pyplot as plt import numpy from pylab import * import mytools import pickle import sys import time v0 = -80 ca0 = 0.0001 proximalpoint = 400 distalpoint = 620 #distalpoint = 960 BACdt = 5.0 Is = [0.65+0.025*x for x in range(0,11)] iIs = [4,5,6,8,10] spTimesAllAll = [] spTimesAllAll2 = [] nSpikesAllAll = [] ISIs_allAll = [] fs = 8 gsk_apics = [1.0+x*0.25 for x in range(0,13)] + [4.0 for x in range(0,20)] gcas = [1.0 for x in range(0,13)] + [1.05+0.05*x for x in range(0,20)] condSuffixes = ['bk','sk','cah','car','iH','iA','kslow','na'] gNames = ['gbar','gbar','pbar','pbar','gbar','gbar','gbar','gbar'] def strroundhalf(x): if x+0.0000001-int(x) < 0.000001: return str(x) else: return str(int(2*x+0.0000001)*0.5) for icell in range(0,1): styles = ['g-','g-','g-','g-','g-','g-','g-','g-','g-'] cols = ['#666666','#012345','#aa00aa','#bbaa00','#ee6600','#ff0000', '#00aaaa','#772277','#00cc00'] close("all") f,axarr = subplots(len(iIs),1) for iiI in range(0,len(iIs)): axarr[iiI].set_position([0.14,0.3+0.13*iiI,0.39,0.12]) axarr[iiI].set_xticks([0.35+x for x in [0,6,12,18,24,30]]) axarr[iiI].set_yticks([0,2,4,6,8]) #axarr[iiI].grid(True, 'major', 'y', color='0.65',linestyle='-') axarr[iiI].set_xticklabels([]) rect1 = matplotlib.patches.Rectangle((0.9,0), 12.05, 10, color='#ffffe4') rect2 = matplotlib.patches.Rectangle((12.9,0), 21.05, 10, color='#ffeeee') axarr[iiI].add_patch(rect1) axarr[iiI].add_patch(rect2) #if iiI != 2: # axarr[iiI].set_ylabel("I = "+str(Is[iIs[iiI]])) axarr[iiI].text(1, 5.75, 'I = '+str(Is[iIs[iiI]])+' nA',fontsize=fs+2) for tick in axarr[iiI].yaxis.get_major_ticks()+axarr[iiI].xaxis.get_major_ticks(): tick.label.set_fontsize(fs+2) axarr[iiI].xaxis.set_ticks_position('bottom') axarr[iiI].yaxis.set_ticks_position('left') axarr[4].text(0.2, 7.8, '*',fontsize=fs+2) axarr[4].text(1.2, 7.8, '*',fontsize=fs+2) axarr[4].text(2.2, 7.8, '*',fontsize=fs+2) axarr[4].text(4.2, 7.8, '*',fontsize=fs+2) axarr[4].text(12.2, 7.8, '*',fontsize=fs+2) axarr[4].text(18.2, 7.8, '*',fontsize=fs+2) axarr[4].text(24.2, 7.8, '*',fontsize=fs+2) axarr[2].set_ylabel("Number of spikes per burst\n") axarr[0].set_xlabel("\n\n\n\n\n\n\nAlmog model parameter change") for ig in range(0,len(gsk_apics)-1): unpicklefile = open('spikesperburst_'+str(ig)+'.sav', 'r') unpickledlist = pickle.load(unpicklefile) unpicklefile.close() spikesPerBursts = unpickledlist[0] spikesPerBursts2 = unpickledlist[1] print spikesPerBursts print spikesPerBursts2 for iiI in range(0,len(iIs)): iI = iIs[iiI] I = Is[iI] nspikehist = [] for nspikes in range(0,21): nspikehist.append(sum([1 for x in spikesPerBursts2[iI][2:] if x==nspikes])) nspikehist = [x/sum(nspikehist) for x in nspikehist] maxnspikes = 0 for inspikes in range(0,21): if nspikehist[inspikes] > 0: axarr[iiI].plot([ig,ig+0.65*nspikehist[inspikes]],[inspikes, inspikes],'b-',linewidth=2) maxnspikes = max(maxnspikes, inspikes) #axarr[iiI].set_ylim([0.5, maxnspikes+0.5]) axarr[iiI].set_ylim([0.5, 7.5]) axarr[iiI].set_xlim([0,26.9]) for itick in range(0,3): axarr[0].text(0.1+6*itick, -0.5, 'gca: 100%, gsk: '+strroundhalf(100*gsk_apics[6*itick])+'%', {},rotation=90,fontsize=fs-2) for itick in range(0,2): axarr[0].text(0.1+18+6*itick, -0.5, 'gca: '+strroundhalf(100*gcas[18+6*itick])+'%, gsk: 400%', {},rotation=90,fontsize=fs-2) f.savefig("nSpikesPerBurstsAlmog.eps")