This is a NEURON version of the CA3 pyramidal cell model of Traub et al. 1991 (J. Neurophysiol. 66(2): 635-650).
The Bash shell script MakeSpecial.sh will create the special executable with the required mechanisms to simulate the model. Location: subdirectory x86_64 (created after running MakeSpecial.sh). This assumes NEURON is installed and nrnivmodl is in the executable PATH.
Run the following command from the root directory for a graphical interface allowing to generate each figure:
./x86_64/special mosinit.hoc -
Alternatively, each of the files GenerateFigX.hoc (where X = 3, 4, … 10) will generate the data for the corresponding figure in Traub et al. (1991):
./x86_64/special GenerateFigX.hoc -
To plot the results, start Matlab, switch to the appropriate figure directory, for example for figure 3:
and run the corresponding Matlab script:
Comparison with the original paper figures are in the Traub_Figures>CompareOriginalFigs subdirectory