This is a model for the 24-hour synchronized rhythms of the clock gene expression in the choroid plexus (CP), used in
Myung J, Schmal C, Hong S, Tsukizawa Y, Rose P, Zhang Y, Holtzman MJ, De Schutter E, Herzel H (2018) The Choroid Plexus is an Important Circadian Clock Component. Nat Commun, in press.
Here we present three example models for two distinct configurations, contained in the following directories:
This is a model used for Fig. S11c, implemented in Python. The main file of this simulation
2DPoincareSimulation.py and requires packages,
The simulation is self-contained and generates Fig. S11c of the paper.
This is a model for Fig. S13 and written in MATLAB. The main program is
Simulation_Fig_S13.m, and running this generates an output
fig_s13_data.mat. To generate Fig. S13 from this data, use
Plot_Fig_S13.ipynb that is a Jupyter notebook written in Julia language.
This is a smaller, one-dimensional chain model implemented in Mathematica, which is used for Fig. 3 in the paper.
Written by Sungho Hong, Computational Neuroscience Unit, Okinawa Institute of Science and Technology, Japan.
February 9, 2018
Correspondence: Jihwan Myung (email@example.com), Graduate Institute of Humanities in Medicine, Taipei Medical University, Taiwan.